Wall clock time and date at job start Mon Mar 30 2020 03:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47452 * 2 1 4 4 H 1.09001 * 109.47067 * 56.87245 * 3 2 1 5 5 C 1.50699 * 109.47487 * 176.87449 * 3 2 1 6 6 H 1.07994 * 120.00610 * 119.99945 * 5 3 2 7 7 C 1.37880 * 119.99691 * 300.00088 * 5 3 2 8 8 N 1.31514 * 119.99982 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00177 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46841 * 59.99549 * 9 7 5 11 11 H 1.48500 * 109.47051 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46718 * 299.99861 * 9 7 5 13 13 N 1.46899 * 109.47130 * 296.87033 * 3 2 1 14 14 C 1.46905 * 111.00163 * 320.11385 * 13 3 2 15 15 C 1.52997 * 109.46934 * 196.50338 * 14 13 3 16 16 C 1.46905 * 110.99908 * 84.06418 * 13 3 2 17 17 C 1.53001 * 109.47109 * 79.87670 * 16 13 3 18 18 H 1.08995 * 110.33207 * 62.33952 * 17 16 13 19 19 C 1.54912 * 110.37345 * 184.71770 * 17 16 13 20 20 C 1.55139 * 101.65301 * 155.89748 * 19 17 16 21 21 C 1.54319 * 103.01888 * 324.34527 * 20 19 17 22 22 N 1.47445 * 107.23765 * 22.28412 * 21 20 19 23 23 H 1.09005 * 109.46873 * 191.08947 * 1 2 3 24 24 H 1.09005 * 109.46640 * 311.08262 * 1 2 3 25 25 H 1.08996 * 109.47204 * 71.08377 * 1 2 3 26 26 H 1.09007 * 109.46886 * 240.00315 * 2 1 3 27 27 H 1.08995 * 109.47443 * 120.00456 * 2 1 3 28 28 H 0.97003 * 120.00122 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.46861 * 316.49958 * 14 13 3 30 30 H 1.08992 * 109.46926 * 76.49793 * 14 13 3 31 31 H 1.09000 * 109.46902 * 182.57386 * 15 14 13 32 32 H 1.09006 * 109.47055 * 302.56575 * 15 14 13 33 33 H 1.08993 * 109.47525 * 62.56628 * 15 14 13 34 34 H 1.09005 * 109.47304 * 199.87762 * 16 13 3 35 35 H 1.08995 * 109.46760 * 319.87455 * 16 13 3 36 36 H 1.08995 * 110.98471 * 273.98839 * 19 17 16 37 37 H 1.08994 * 110.98700 * 37.80511 * 19 17 16 38 38 H 1.08991 * 110.70731 * 205.96269 * 20 19 17 39 39 H 1.09002 * 110.85496 * 82.79542 * 20 19 17 40 40 H 1.08994 * 109.88991 * 262.87682 * 21 20 19 41 41 H 1.09005 * 110.02543 * 141.76697 * 21 20 19 42 42 H 1.00893 * 111.00291 * 123.25203 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6317 1.9722 0.8606 5 6 3.5451 1.4431 0.0775 6 1 4.1263 1.8962 -0.7120 7 6 4.1801 0.8653 1.1563 8 7 3.4723 0.3140 2.1180 9 14 6.0456 0.8667 1.2529 10 1 6.5401 2.2670 1.2532 11 1 6.4772 0.1895 2.5020 12 1 6.6024 0.1454 0.0803 13 7 1.6132 2.1128 -1.2354 14 6 1.7195 1.2089 -2.3887 15 6 1.6718 2.0248 -3.6821 16 6 0.2482 2.6397 -1.1038 17 6 0.2839 3.9619 -0.3346 18 1 0.8631 4.7041 -0.8839 19 6 -1.1548 4.4769 -0.0804 20 6 -0.9497 5.3768 1.1666 21 6 0.1341 4.6224 1.9652 22 7 0.8556 3.7577 1.0135 23 1 -0.3633 -1.0085 0.1977 24 1 -0.3633 0.6754 0.7747 25 1 -0.3633 0.3331 -0.9721 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.9190 -0.0922 2.8772 29 1 2.6621 0.6640 -2.3374 30 1 0.8900 0.5021 -2.3740 31 1 1.7047 1.3508 -4.5381 32 1 0.7495 2.6051 -3.7118 33 1 2.5270 2.6996 -3.7178 34 1 -0.1738 2.8072 -2.0948 35 1 -0.3679 1.9214 -0.5632 36 1 -1.5160 5.0600 -0.9275 37 1 -1.8315 3.6516 0.1406 38 1 -1.8713 5.4518 1.7435 39 1 -0.5962 6.3664 0.8771 40 1 -0.3324 4.0133 2.7394 41 1 0.8256 5.3325 2.4188 42 1 1.8444 3.9579 1.0210 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300057586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:48 Heat of formation + Delta-G solvation = 14.155316 kcal Electronic energy + Delta-G solvation = -19084.281605 eV Core-core repulsion = 16485.507262 eV Total energy + Delta-G solvation = -2598.774343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.75466 -36.86754 -32.89252 -31.08477 -30.42498 -29.73709 -28.38217 -26.52110 -24.00981 -22.48273 -21.37005 -20.54515 -19.45324 -18.67204 -16.48626 -16.02083 -15.16353 -14.87514 -14.11032 -13.96543 -13.69194 -13.31677 -12.89728 -12.56881 -12.28424 -11.98502 -11.68173 -11.42824 -11.20085 -11.10853 -11.00261 -10.92030 -10.84647 -10.66959 -10.54403 -10.37097 -10.09666 -10.06920 -9.81586 -9.52815 -9.34810 -8.72537 -8.20026 -7.46168 -6.78331 -5.81120 -3.82044 3.40666 3.45260 3.48322 4.54604 4.73342 4.94839 5.03051 5.27647 5.42348 5.48682 5.71607 5.80598 5.83291 5.95202 6.00491 6.03558 6.10024 6.15388 6.18707 6.28730 6.32736 6.35697 6.46018 6.46939 6.55609 6.60824 6.74927 6.84335 6.92707 7.04399 7.31558 7.48650 7.63757 7.84578 7.93220 8.04955 8.12251 8.59156 8.70532 8.88837 9.26598 9.80475 11.24562 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.009406 C = 0.007814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.985706 B = 2976.156990 C = 3582.475090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.194 3.806 4 H 0.097 0.903 5 C -0.489 4.489 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.892 5.892 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.282 1.282 13 N -0.528 5.528 14 C 0.055 3.945 15 C -0.145 4.145 16 C 0.046 3.954 17 C 0.090 3.910 18 H 0.046 0.954 19 C -0.125 4.125 20 C -0.141 4.141 21 C 0.045 3.955 22 N -0.660 5.660 23 H 0.025 0.975 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.256 0.744 29 H 0.075 0.925 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.095 6.345 -4.257 11.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.088 3.912 4 H 0.114 0.886 5 C -0.529 4.529 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.208 1.208 13 N -0.252 5.252 14 C -0.073 4.073 15 C -0.203 4.203 16 C -0.083 4.083 17 C -0.020 4.020 18 H 0.064 0.936 19 C -0.164 4.164 20 C -0.180 4.180 21 C -0.085 4.085 22 N -0.292 5.292 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.090 6.061 -4.003 10.872 hybrid contribution 0.917 0.068 -0.024 0.920 sum -7.173 6.129 -4.027 10.259 Atomic orbital electron populations 1.22122 0.99969 0.98939 0.99581 1.22249 0.91329 1.02985 1.02346 1.19963 0.94563 0.88665 0.88058 0.88583 1.21173 0.91538 1.35044 1.05107 0.92766 1.24870 0.97343 0.96053 0.96005 1.69884 1.34404 1.39050 1.09880 0.86754 0.86861 0.77923 0.76867 1.20593 1.21711 1.20757 1.62268 1.19939 1.37450 1.05493 1.21955 1.00691 0.94106 0.90555 1.21839 1.01261 1.00032 0.97143 1.22458 0.92680 0.95630 0.97517 1.22318 0.92787 0.96553 0.90390 0.93555 1.22724 0.97643 0.98925 0.97121 1.22766 0.99416 0.98516 0.97272 1.22605 0.95387 0.94204 0.96275 1.61879 1.08513 1.54030 1.04740 0.95564 0.93010 0.94417 0.95128 0.88832 0.93388 0.90690 0.96087 0.93918 0.93767 0.92623 0.93139 0.92427 0.91689 0.91043 0.91579 0.92094 0.91468 0.93908 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 8.08 37.16 0.30 -2.76 16 2 C -0.15 -3.58 4.71 -26.73 -0.13 -3.71 16 3 C 0.19 4.66 1.50 -68.87 -0.10 4.55 16 4 H 0.10 2.45 4.84 -51.93 -0.25 2.19 16 5 C -0.49 -13.20 8.21 -34.44 -0.28 -13.48 16 6 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 8 N -0.89 -25.29 11.30 55.43 0.63 -24.66 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.53 -10.97 4.20 -228.04 -0.96 -11.93 16 14 C 0.06 1.08 4.08 -3.82 -0.02 1.06 16 15 C -0.14 -2.35 10.01 37.16 0.37 -1.97 16 16 C 0.05 0.83 4.06 -3.82 -0.02 0.82 16 17 C 0.09 1.49 3.55 -66.18 -0.23 1.26 16 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.13 -1.71 6.50 -24.59 -0.16 -1.87 16 20 C -0.14 -1.79 6.94 -24.91 -0.17 -1.96 16 21 C 0.04 0.68 7.58 -2.83 -0.02 0.65 16 22 N -0.66 -12.06 4.28 -103.84 -0.44 -12.51 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 1.09 7.40 -51.93 -0.38 0.70 16 25 H 0.04 0.72 4.82 -51.93 -0.25 0.47 16 26 H 0.03 0.73 6.18 -51.93 -0.32 0.41 16 27 H 0.09 2.54 5.99 -51.93 -0.31 2.23 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.07 1.63 6.98 -51.93 -0.36 1.27 16 30 H 0.02 0.41 5.72 -51.93 -0.30 0.11 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.67 6.52 -51.93 -0.34 0.33 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.84 6.22 -51.93 -0.32 0.51 16 35 H 0.06 1.10 3.86 -51.93 -0.20 0.90 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.99 8.04 -51.93 -0.42 0.58 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.35 7.11 8.47 -39.30 -0.33 6.77 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -27.31 305.62 -8.89 -36.20 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.14 Total: 7.69 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.55 Total: -15.93 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.78 Total: -49.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.31 -8.89 -36.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300057586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.353 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds