Wall clock time and date at job start Mon Mar 30 2020 03:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 H 1.08997 * 109.47117 * 55.25909 * 3 2 1 5 5 C 1.50693 * 109.47185 * 295.25679 * 3 2 1 6 6 H 1.08005 * 119.99919 * 274.32833 * 5 3 2 7 7 C 1.37881 * 120.00228 * 94.33244 * 5 3 2 8 8 N 1.31516 * 119.99839 * 5.65211 * 7 5 3 9 9 Si 1.86796 * 119.99979 * 185.65511 * 7 5 3 10 10 H 1.48502 * 109.46957 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47549 * 299.99677 * 9 7 5 12 12 H 1.48501 * 109.47293 * 59.99923 * 9 7 5 13 13 N 1.46905 * 109.47159 * 175.25474 * 3 2 1 14 14 C 1.46895 * 110.99896 * 53.26195 * 13 3 2 15 15 C 1.53003 * 109.47202 * 163.48845 * 14 13 3 16 16 C 1.46898 * 110.99914 * 289.31225 * 13 3 2 17 17 C 1.53000 * 109.47161 * 289.44337 * 16 13 3 18 18 H 1.09007 * 110.33498 * 64.40574 * 17 16 13 19 19 C 1.54907 * 110.37618 * 186.77459 * 17 16 13 20 20 C 1.55141 * 101.65222 * 155.89835 * 19 17 16 21 21 C 1.54315 * 103.02238 * 324.35079 * 20 19 17 22 22 N 1.47446 * 107.23220 * 22.27960 * 21 20 19 23 23 H 1.09001 * 109.47134 * 300.28009 * 1 2 3 24 24 H 1.09006 * 109.46930 * 60.27360 * 1 2 3 25 25 H 1.08994 * 109.47356 * 180.27753 * 1 2 3 26 26 H 1.09004 * 109.46682 * 240.00007 * 2 1 3 27 27 H 1.09004 * 109.46897 * 119.99975 * 2 1 3 28 28 H 0.97000 * 120.00167 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47645 * 283.49287 * 14 13 3 30 30 H 1.09011 * 109.47089 * 43.49262 * 14 13 3 31 31 H 1.08997 * 109.46931 * 306.41774 * 15 14 13 32 32 H 1.08998 * 109.46463 * 66.41880 * 15 14 13 33 33 H 1.09002 * 109.46677 * 186.41802 * 15 14 13 34 34 H 1.09000 * 109.47550 * 49.44453 * 16 13 3 35 35 H 1.09000 * 109.47271 * 169.44457 * 16 13 3 36 36 H 1.08995 * 110.99362 * 273.99526 * 19 17 16 37 37 H 1.09007 * 110.98667 * 37.81002 * 19 17 16 38 38 H 1.08999 * 110.70707 * 205.96605 * 20 19 17 39 39 H 1.09004 * 110.85295 * 82.80369 * 20 19 17 40 40 H 1.09003 * 109.88749 * 262.87778 * 21 20 19 41 41 H 1.08997 * 110.02459 * 141.76289 * 21 20 19 42 42 H 1.00904 * 110.99363 * 123.25622 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6091 1.9802 0.8444 5 6 1.6360 2.1181 -1.2849 6 1 2.2548 2.0197 -2.1646 7 6 0.4764 2.8622 -1.3376 8 7 -0.2188 3.0748 -0.2416 9 14 -0.1074 3.5679 -2.9656 10 1 -1.3695 4.3214 -2.7543 11 1 0.9296 4.4811 -3.5096 12 1 -0.3467 2.4619 -3.9273 13 7 3.5046 1.4440 0.1146 14 6 4.1143 0.5943 -0.9170 15 6 5.6020 0.9295 -1.0403 16 6 3.9280 1.0269 1.4580 17 6 3.5817 2.1248 2.4657 18 1 2.5011 2.2536 2.5291 19 6 4.1690 1.7838 3.8580 20 6 4.2805 3.1898 4.5040 21 6 4.6614 4.0915 3.3110 22 7 4.2302 3.3973 2.0837 23 1 -0.3633 0.5182 0.8875 24 1 -0.3633 0.5096 -0.8925 25 1 -0.3634 -1.0276 0.0050 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 -1.0348 3.5979 -0.2787 29 1 3.9997 -0.4534 -0.6391 30 1 3.6212 0.7727 -1.8727 31 1 5.7206 2.0003 -1.2056 32 1 6.1158 0.6445 -0.1222 33 1 6.0292 0.3825 -1.8807 34 1 3.4125 0.1064 1.7320 35 1 5.0045 0.8556 1.4629 36 1 3.4888 1.1470 4.4234 37 1 5.1502 1.3182 3.7644 38 1 5.0625 3.2043 5.2631 39 1 3.3257 3.4977 4.9303 40 1 5.7405 4.2439 3.2911 41 1 4.1528 5.0521 3.3918 42 1 3.6035 3.9745 1.5431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300057587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:51 Heat of formation + Delta-G solvation = -4.155664 kcal Electronic energy + Delta-G solvation = -18811.564032 eV Core-core repulsion = 16211.995665 eV Total energy + Delta-G solvation = -2599.568367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.55798 -36.84408 -33.20700 -31.14962 -30.51242 -29.66258 -28.38133 -26.18466 -23.88201 -22.81679 -21.44166 -20.56463 -20.00108 -18.22218 -16.62894 -16.00167 -15.14403 -14.81457 -14.14682 -13.98927 -13.50373 -13.36462 -13.08945 -12.67975 -12.45111 -11.89622 -11.74970 -11.57677 -11.20941 -11.16492 -11.01951 -10.87453 -10.77928 -10.68601 -10.58431 -10.39762 -10.25156 -10.23977 -9.95060 -9.62727 -9.18841 -8.84081 -8.33148 -7.73282 -6.87557 -5.96897 -3.95942 3.35007 3.39454 3.43115 4.46033 4.69691 4.93729 5.02869 5.20928 5.34391 5.47903 5.68170 5.81310 5.87045 5.97991 6.00842 6.08082 6.10731 6.19657 6.23808 6.30888 6.32092 6.39996 6.42364 6.48579 6.53122 6.67922 6.76490 6.86881 6.96067 6.99719 7.22109 7.35076 7.53490 7.62796 7.67213 7.91912 8.07423 8.21624 8.55555 8.76554 9.10710 9.65484 11.11479 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.008271 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.270927 B = 3384.550139 C = 3686.705335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.140 4.140 3 C 0.199 3.801 4 H 0.070 0.930 5 C -0.489 4.489 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.892 5.892 9 Si 0.886 3.114 10 H -0.290 1.290 11 H -0.277 1.277 12 H -0.279 1.279 13 N -0.515 5.515 14 C 0.057 3.943 15 C -0.141 4.141 16 C 0.068 3.932 17 C 0.088 3.912 18 H 0.055 0.945 19 C -0.126 4.126 20 C -0.142 4.142 21 C 0.046 3.954 22 N -0.662 5.662 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.012 0.988 26 H 0.039 0.961 27 H 0.020 0.980 28 H 0.259 0.741 29 H 0.012 0.988 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.022 0.978 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -2.322 6.108 9.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.093 3.907 4 H 0.088 0.912 5 C -0.528 4.528 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.531 5.531 9 Si 0.714 3.286 10 H -0.215 1.215 11 H -0.203 1.203 12 H -0.205 1.205 13 N -0.238 5.238 14 C -0.072 4.072 15 C -0.198 4.198 16 C -0.061 4.061 17 C -0.022 4.022 18 H 0.073 0.927 19 C -0.164 4.164 20 C -0.180 4.180 21 C -0.084 4.084 22 N -0.292 5.292 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.031 0.969 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.638 -2.004 5.930 9.875 hybrid contribution -1.599 -0.127 -0.356 1.643 sum 6.039 -2.132 5.574 8.490 Atomic orbital electron populations 1.21429 0.96007 0.97009 1.03223 1.22246 0.96795 1.01520 0.97466 1.19640 0.81325 0.90432 0.99300 0.91210 1.20942 1.05936 1.30125 0.95755 0.92687 1.24854 0.97068 0.95563 0.95911 1.69917 1.16461 1.40261 1.26421 0.86759 0.77962 0.79188 0.84658 1.21540 1.20305 1.20480 1.62483 1.11020 1.50363 0.99913 1.21911 0.94227 0.93410 0.97606 1.21766 0.96555 1.02038 0.99483 1.22033 0.99178 0.94050 0.90830 1.22322 0.96765 0.90908 0.92247 0.92723 1.22725 1.01153 0.96484 0.96069 1.22764 1.01179 0.96028 0.98063 1.22576 1.00419 0.95925 0.89449 1.61594 1.44937 1.05367 1.17345 0.93374 0.91565 0.96896 0.94200 0.96126 0.93129 0.96945 0.90432 0.91933 0.93960 0.94111 0.96035 0.92078 0.91541 0.91164 0.91581 0.91863 0.91730 0.93902 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.99 37.16 0.33 -2.35 16 2 C -0.14 -3.14 4.63 -26.73 -0.12 -3.26 16 3 C 0.20 4.74 1.85 -68.87 -0.13 4.61 16 4 H 0.07 1.85 5.52 -51.93 -0.29 1.57 16 5 C -0.49 -12.84 7.50 -34.44 -0.26 -13.10 16 6 H 0.05 1.47 6.40 -52.48 -0.34 1.14 16 7 C 0.07 1.80 4.22 -17.82 -0.08 1.72 16 8 N -0.89 -24.38 12.03 55.43 0.67 -23.72 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.52 -10.85 4.18 -228.04 -0.95 -11.80 16 14 C 0.06 1.11 4.39 -3.83 -0.02 1.09 16 15 C -0.14 -2.37 9.87 37.16 0.37 -2.00 16 16 C 0.07 1.27 4.45 -3.83 -0.02 1.25 16 17 C 0.09 1.55 3.16 -66.19 -0.21 1.34 16 18 H 0.05 1.11 6.75 -51.92 -0.35 0.76 16 19 C -0.13 -1.79 6.50 -24.59 -0.16 -1.95 16 20 C -0.14 -1.84 6.94 -24.91 -0.17 -2.02 16 21 C 0.05 0.66 7.58 -2.84 -0.02 0.64 16 22 N -0.66 -11.66 6.87 -103.84 -0.71 -12.37 16 23 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.07 1.64 6.41 -51.93 -0.33 1.30 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.88 6.98 -51.93 -0.36 0.52 16 27 H 0.02 0.43 6.38 -51.93 -0.33 0.10 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.01 0.24 7.27 -51.93 -0.38 -0.14 16 30 H 0.08 1.65 6.16 -51.92 -0.32 1.33 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.67 6.81 -51.93 -0.35 0.32 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.02 0.41 6.25 -51.93 -0.32 0.09 16 35 H 0.06 1.09 6.40 -51.93 -0.33 0.76 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.96 8.02 -51.92 -0.42 0.55 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.35 6.86 8.91 -39.29 -0.35 6.51 16 LS Contribution 313.86 15.07 4.73 4.73 Total: -1.00 -26.31 313.86 -9.19 -35.49 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.41 Total: 5.65 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.48 Total: -14.01 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -1.00 Total: -47.89 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -26.31 -9.19 -35.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300057587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.338 kcal (2) G-P(sol) polarization free energy of solvation -26.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds