Wall clock time and date at job start Mon Mar 30 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 H 1.08997 * 109.47117 * 55.25909 * 3 2 1 5 5 C 1.50693 * 109.47185 * 295.25679 * 3 2 1 6 6 H 1.08005 * 119.99919 * 274.32833 * 5 3 2 7 7 C 1.37881 * 120.00228 * 94.33244 * 5 3 2 8 8 N 1.31516 * 119.99839 * 5.65211 * 7 5 3 9 9 Si 1.86796 * 119.99979 * 185.65511 * 7 5 3 10 10 H 1.48502 * 109.46957 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47549 * 299.99677 * 9 7 5 12 12 H 1.48501 * 109.47293 * 59.99923 * 9 7 5 13 13 N 1.46905 * 109.47159 * 175.25474 * 3 2 1 14 14 C 1.46895 * 110.99896 * 53.26195 * 13 3 2 15 15 C 1.53003 * 109.47202 * 163.48845 * 14 13 3 16 16 C 1.46898 * 110.99914 * 289.31225 * 13 3 2 17 17 C 1.53000 * 109.47161 * 289.44337 * 16 13 3 18 18 H 1.09007 * 110.33498 * 64.40574 * 17 16 13 19 19 C 1.54907 * 110.37618 * 186.77459 * 17 16 13 20 20 C 1.55141 * 101.65222 * 155.89835 * 19 17 16 21 21 C 1.54315 * 103.02238 * 324.35079 * 20 19 17 22 22 N 1.47446 * 107.23220 * 22.27960 * 21 20 19 23 23 H 1.09001 * 109.47134 * 300.28009 * 1 2 3 24 24 H 1.09006 * 109.46930 * 60.27360 * 1 2 3 25 25 H 1.08994 * 109.47356 * 180.27753 * 1 2 3 26 26 H 1.09004 * 109.46682 * 240.00007 * 2 1 3 27 27 H 1.09004 * 109.46897 * 119.99975 * 2 1 3 28 28 H 0.97000 * 120.00167 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47645 * 283.49287 * 14 13 3 30 30 H 1.09011 * 109.47089 * 43.49262 * 14 13 3 31 31 H 1.08997 * 109.46931 * 306.41774 * 15 14 13 32 32 H 1.08998 * 109.46463 * 66.41880 * 15 14 13 33 33 H 1.09002 * 109.46677 * 186.41802 * 15 14 13 34 34 H 1.09000 * 109.47550 * 49.44453 * 16 13 3 35 35 H 1.09000 * 109.47271 * 169.44457 * 16 13 3 36 36 H 1.08995 * 110.99362 * 273.99526 * 19 17 16 37 37 H 1.09007 * 110.98667 * 37.81002 * 19 17 16 38 38 H 1.08999 * 110.70707 * 205.96605 * 20 19 17 39 39 H 1.09004 * 110.85295 * 82.80369 * 20 19 17 40 40 H 1.09003 * 109.88749 * 262.87778 * 21 20 19 41 41 H 1.08997 * 110.02459 * 141.76289 * 21 20 19 42 42 H 1.00904 * 110.99363 * 123.25622 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6091 1.9802 0.8444 5 6 1.6360 2.1181 -1.2849 6 1 2.2548 2.0197 -2.1646 7 6 0.4764 2.8622 -1.3376 8 7 -0.2188 3.0748 -0.2416 9 14 -0.1074 3.5679 -2.9656 10 1 -1.3695 4.3214 -2.7543 11 1 0.9296 4.4811 -3.5096 12 1 -0.3467 2.4619 -3.9273 13 7 3.5046 1.4440 0.1146 14 6 4.1143 0.5943 -0.9170 15 6 5.6020 0.9295 -1.0403 16 6 3.9280 1.0269 1.4580 17 6 3.5817 2.1248 2.4657 18 1 2.5011 2.2536 2.5291 19 6 4.1690 1.7838 3.8580 20 6 4.2805 3.1898 4.5040 21 6 4.6614 4.0915 3.3110 22 7 4.2302 3.3973 2.0837 23 1 -0.3633 0.5182 0.8875 24 1 -0.3633 0.5096 -0.8925 25 1 -0.3634 -1.0276 0.0050 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 -1.0348 3.5979 -0.2787 29 1 3.9997 -0.4534 -0.6391 30 1 3.6212 0.7727 -1.8727 31 1 5.7206 2.0003 -1.2056 32 1 6.1158 0.6445 -0.1222 33 1 6.0292 0.3825 -1.8807 34 1 3.4125 0.1064 1.7320 35 1 5.0045 0.8556 1.4629 36 1 3.4888 1.1470 4.4234 37 1 5.1502 1.3182 3.7644 38 1 5.0625 3.2043 5.2631 39 1 3.3257 3.4977 4.9303 40 1 5.7405 4.2439 3.2911 41 1 4.1528 5.0521 3.3918 42 1 3.6035 3.9745 1.5431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300057587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:50 Heat of formation + Delta-G solvation = -20.813545 kcal Electronic energy + Delta-G solvation = -18812.286372 eV Core-core repulsion = 16211.995665 eV Total energy + Delta-G solvation = -2600.290707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.01562 -38.35734 -35.06168 -33.04263 -31.92564 -30.88417 -29.95368 -27.96916 -25.48250 -24.56474 -23.06048 -21.76932 -21.45449 -19.90659 -18.36094 -17.56441 -16.72920 -16.29088 -15.84483 -15.73602 -15.19008 -14.76110 -14.54585 -14.32446 -13.93535 -13.56527 -13.17972 -13.06124 -12.76566 -12.71103 -12.63144 -12.46222 -12.40606 -12.25690 -12.11707 -12.00512 -11.80305 -11.67671 -11.56460 -11.32075 -10.95402 -10.79330 -10.36709 -9.11991 -8.54173 -8.01413 -6.05525 1.43662 1.44814 1.50950 2.48336 3.19026 3.41022 3.61064 3.88244 4.00184 4.19891 4.31075 4.39923 4.46940 4.52894 4.61166 4.73082 4.74594 4.77155 4.82504 4.87182 4.90214 4.96390 5.00901 5.06365 5.13628 5.16837 5.27728 5.31466 5.38084 5.41446 5.44864 5.60462 5.73338 5.78859 5.84185 6.21859 6.33232 6.57882 6.81787 6.98735 7.06572 7.58490 9.05278 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020489 B = 0.008271 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.270927 B = 3384.550139 C = 3686.705335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C 0.209 3.791 4 H 0.039 0.961 5 C -0.499 4.499 6 H 0.045 0.955 7 C 0.029 3.971 8 N -0.913 5.913 9 Si 0.937 3.063 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.275 1.275 13 N -0.527 5.527 14 C 0.057 3.943 15 C -0.129 4.129 16 C 0.073 3.927 17 C 0.087 3.913 18 H 0.019 0.981 19 C -0.119 4.119 20 C -0.134 4.134 21 C 0.042 3.958 22 N -0.672 5.672 23 H 0.031 0.969 24 H 0.040 0.960 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.257 0.743 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.405 -3.024 6.698 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.174 4.174 3 C 0.102 3.898 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.063 0.937 7 C -0.171 4.171 8 N -0.553 5.553 9 Si 0.764 3.236 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.201 1.201 13 N -0.249 5.249 14 C -0.072 4.072 15 C -0.187 4.187 16 C -0.056 4.056 17 C -0.024 4.024 18 H 0.037 0.963 19 C -0.157 4.157 20 C -0.173 4.173 21 C -0.087 4.087 22 N -0.300 5.300 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.061 -2.715 6.525 11.491 hybrid contribution -1.994 0.083 -0.534 2.066 sum 7.066 -2.631 5.990 9.630 Atomic orbital electron populations 1.21304 0.96170 0.98150 1.01098 1.22133 0.96559 1.00677 0.98029 1.19336 0.83027 0.90607 0.96846 0.94337 1.21172 1.05873 1.30259 0.96449 0.93657 1.25409 0.97282 0.96088 0.98273 1.70033 1.16614 1.40903 1.27739 0.85949 0.77372 0.78535 0.81720 1.21399 1.20348 1.20066 1.62377 1.09430 1.51492 1.01647 1.21925 0.95710 0.93492 0.96026 1.21652 0.94531 1.01387 1.01080 1.22054 0.99663 0.94242 0.89612 1.22278 0.94938 0.90963 0.94199 0.96321 1.22705 1.01627 0.97573 0.93815 1.22748 1.02116 0.94514 0.97901 1.22694 1.01012 0.96159 0.88824 1.61628 1.44061 1.05434 1.18925 0.94986 0.94089 0.94046 0.94099 0.94765 0.93431 0.96285 0.92693 0.93378 0.92809 0.91742 0.96249 0.90771 0.90563 0.89946 0.88788 0.91989 0.90532 0.93587 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.93 8.99 71.98 0.65 -4.29 16 2 C -0.13 -5.97 4.63 30.59 0.14 -5.83 16 3 C 0.21 10.11 1.85 44.17 0.08 10.20 16 4 H 0.04 2.13 5.52 -2.39 -0.01 2.11 16 5 C -0.50 -26.71 7.50 25.60 0.19 -26.52 16 6 H 0.05 2.47 6.40 -2.91 -0.02 2.45 16 7 C 0.03 1.55 4.22 84.66 0.36 1.91 16 8 N -0.91 -51.20 12.03 21.45 0.26 -50.95 16 9 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.53 -22.21 4.18 -875.39 -3.66 -25.87 16 14 C 0.06 2.17 4.39 86.31 0.38 2.55 16 15 C -0.13 -4.09 9.87 71.98 0.71 -3.38 16 16 C 0.07 2.66 4.45 86.30 0.38 3.04 16 17 C 0.09 3.04 3.16 45.39 0.14 3.18 16 18 H 0.02 0.79 6.75 -2.38 -0.02 0.77 16 19 C -0.12 -3.13 6.50 31.98 0.21 -2.93 16 20 C -0.13 -3.17 6.94 31.77 0.22 -2.95 16 21 C 0.04 1.15 7.58 86.64 0.66 1.81 16 22 N -0.67 -23.52 6.87 -482.45 -3.31 -26.83 16 23 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.04 2.03 6.41 -2.38 -0.02 2.02 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 1.79 6.98 -2.38 -0.02 1.77 16 27 H 0.03 1.41 6.38 -2.38 -0.02 1.40 16 28 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.02 0.70 7.27 -2.39 -0.02 0.68 16 30 H 0.05 2.34 6.16 -2.38 -0.01 2.32 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.57 6.81 -2.39 -0.02 1.56 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 34 H 0.02 0.72 6.25 -2.39 -0.01 0.70 16 35 H 0.07 2.50 6.40 -2.39 -0.02 2.49 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.08 2.00 8.02 -2.38 -0.02 1.98 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.33 13.45 8.91 -89.69 -0.80 12.65 16 Total: -1.00 -56.73 313.86 -0.38 -57.12 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.18 Total: 23.98 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 4.12 Total: -23.20 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -6.71 Total: -103.64 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -56.73 -0.38 -57.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300057587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.302 kcal (2) G-P(sol) polarization free energy of solvation -56.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds