Wall clock time and date at job start Mon Mar 30 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47010 * 2 1 4 4 H 1.09007 * 109.47254 * 183.50131 * 3 2 1 5 5 C 1.50704 * 109.47007 * 63.50990 * 3 2 1 6 6 H 1.08007 * 119.99522 * 241.80002 * 5 3 2 7 7 C 1.37878 * 120.00186 * 61.79560 * 5 3 2 8 8 N 1.31508 * 119.99736 * 196.69121 * 7 5 3 9 9 Si 1.86799 * 119.99857 * 16.69357 * 7 5 3 10 10 H 1.48504 * 109.47060 * 90.67730 * 9 7 5 11 11 H 1.48506 * 109.46871 * 210.67376 * 9 7 5 12 12 H 1.48496 * 109.47129 * 330.67211 * 9 7 5 13 13 N 1.46894 * 109.47807 * 303.50709 * 3 2 1 14 14 C 1.46895 * 111.00277 * 178.26664 * 13 3 2 15 15 C 1.46908 * 110.99867 * 302.21936 * 13 3 2 16 16 H 1.09001 * 109.67359 * 52.26758 * 15 13 3 17 17 C 1.50506 * 109.53398 * 172.64326 * 15 13 3 18 18 C 1.54292 * 112.96950 * 212.01620 * 17 15 13 19 19 C 1.54066 * 112.28768 * 318.29485 * 18 17 15 20 20 N 1.44268 * 111.98140 * 318.91649 * 19 18 17 21 21 C 1.47803 * 109.46296 * 96.43794 * 20 19 18 22 22 C 1.45861 * 112.91521 * 276.73729 * 21 20 19 23 23 H 1.09002 * 109.47468 * 184.50811 * 1 2 3 24 24 H 1.09004 * 109.46557 * 304.50480 * 1 2 3 25 25 H 1.08997 * 109.47753 * 64.50550 * 1 2 3 26 26 H 1.09002 * 109.46187 * 240.00310 * 2 1 3 27 27 H 1.08995 * 109.47296 * 120.00826 * 2 1 3 28 28 H 0.97005 * 120.00113 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.47094 * 183.95063 * 14 13 3 30 30 H 1.08997 * 109.47331 * 303.95069 * 14 13 3 31 31 H 1.09001 * 109.47603 * 63.95528 * 14 13 3 32 32 H 1.08999 * 108.80922 * 91.11425 * 17 15 13 33 33 H 1.09002 * 108.80053 * 332.91162 * 17 15 13 34 34 H 1.09008 * 108.91905 * 197.56909 * 18 17 15 35 35 H 1.09000 * 108.92043 * 79.02166 * 18 17 15 36 36 H 1.09006 * 108.97716 * 198.26870 * 19 18 17 37 37 H 1.08999 * 108.90799 * 79.52134 * 19 18 17 38 38 H 1.00903 * 110.99702 * 219.30895 * 20 19 18 39 39 H 1.08993 * 108.79281 * 155.85535 * 21 20 19 40 40 H 1.09001 * 108.79418 * 37.62495 * 21 20 19 41 41 H 1.09008 * 109.05629 * 181.86445 * 22 21 20 42 42 H 1.08998 * 109.06202 * 300.85495 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1282 1.4431 -0.0628 5 6 1.6099 2.1273 1.2717 6 1 0.9610 2.9896 1.2277 7 6 2.0446 1.6530 2.4912 8 7 1.4323 2.0201 3.5956 9 14 3.5033 0.4890 2.5744 10 1 4.7545 1.2738 2.7296 11 1 3.3434 -0.4225 3.7359 12 1 3.5715 -0.3094 1.3242 13 7 1.4824 2.1590 -1.1547 14 6 1.9186 3.5617 -1.1646 15 6 1.8381 1.4883 -2.4124 16 1 1.5655 0.4344 -2.3561 17 6 1.1062 2.1399 -3.5548 18 6 0.7575 1.1525 -4.6879 19 6 1.9135 0.1806 -4.9923 20 7 3.1952 0.8426 -4.9720 21 6 3.8253 0.6555 -3.6482 22 6 3.3584 1.6173 -2.6560 23 1 -0.3634 -1.0245 0.0808 24 1 -0.3632 0.5822 0.8469 25 1 -0.3634 0.4423 -0.9275 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.7379 1.6862 4.4536 29 1 1.4361 4.0865 -1.9892 30 1 1.6429 4.0346 -0.2221 31 1 3.0005 3.6050 -1.2900 32 1 1.7290 2.9361 -3.9626 33 1 0.1834 2.5790 -3.1758 34 1 0.5243 1.7180 -5.5902 35 1 -0.1210 0.5767 -4.3970 36 1 1.7570 -0.2589 -5.9775 37 1 1.9129 -0.6138 -4.2460 38 1 3.7922 0.4974 -5.7086 39 1 4.9050 0.7579 -3.7556 40 1 3.6038 -0.3510 -3.2930 41 1 3.8851 1.4444 -1.7173 42 1 3.5783 2.6256 -3.0066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300236943.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:26 Heat of formation + Delta-G solvation = 11.541961 kcal Electronic energy + Delta-G solvation = -19184.851157 eV Core-core repulsion = 16585.963490 eV Total energy + Delta-G solvation = -2598.887667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.41929 -36.65934 -33.45951 -32.32603 -31.56312 -30.59353 -26.94981 -25.73212 -25.23234 -23.36502 -22.38744 -20.66159 -19.55811 -18.34433 -16.66142 -16.35511 -15.46592 -14.79755 -14.55298 -14.40374 -14.08551 -13.51108 -13.42012 -12.95156 -12.60011 -12.32993 -12.13654 -11.68474 -11.54956 -11.44846 -11.11829 -10.94852 -10.80150 -10.66370 -10.46833 -10.40874 -10.10840 -10.00551 -9.88060 -9.72366 -9.22837 -8.92045 -8.46322 -8.37265 -7.14394 -6.06672 -3.97576 3.27734 3.37151 3.39621 4.22295 4.44137 4.87800 4.96836 5.06310 5.25632 5.28742 5.42074 5.45784 5.70460 5.75870 5.81293 5.88728 6.03118 6.08641 6.17831 6.25004 6.29334 6.36760 6.39300 6.47993 6.51475 6.55903 6.66911 6.78428 6.85721 6.89171 7.05922 7.07750 7.17396 7.28122 7.42555 7.56093 7.76422 8.08238 8.21256 8.72951 9.05608 9.60457 11.06197 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031414 B = 0.007926 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.114883 B = 3531.786667 C = 3686.855759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 C 0.189 3.811 4 H -0.008 1.008 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.891 5.891 9 Si 0.856 3.144 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.516 5.516 14 C 0.033 3.967 15 C 0.086 3.914 16 H 0.077 0.923 17 C -0.099 4.099 18 C -0.107 4.107 19 C 0.057 3.943 20 N -0.680 5.680 21 C 0.067 3.933 22 C -0.154 4.154 23 H 0.019 0.981 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.025 0.975 27 H 0.053 0.947 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.013 0.987 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.338 0.662 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.510 -3.621 -15.324 15.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.153 4.153 3 C 0.082 3.918 4 H 0.010 0.990 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.529 5.529 9 Si 0.683 3.317 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.238 5.238 14 C -0.115 4.115 15 C -0.023 4.023 16 H 0.095 0.905 17 C -0.137 4.137 18 C -0.146 4.146 19 C -0.073 4.073 20 N -0.310 5.310 21 C -0.062 4.062 22 C -0.193 4.193 23 H 0.038 0.962 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.155 0.845 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.711 -3.012 -14.902 15.299 hybrid contribution 2.102 -1.606 0.147 2.650 sum 3.813 -4.618 -14.754 15.924 Atomic orbital electron populations 1.21483 0.95706 0.98214 1.02825 1.21933 0.97073 0.97925 0.98409 1.19607 0.91783 0.90830 0.89592 0.99033 1.20872 1.30414 1.14964 0.87852 0.90169 1.24834 0.96269 0.95747 0.95711 1.69979 1.38925 1.45807 0.98197 0.87369 0.84398 0.81750 0.78151 1.20924 1.21451 1.17899 1.62273 1.58729 1.01800 1.01036 1.22251 0.96813 0.90444 1.01984 1.21511 0.91193 0.99139 0.90503 0.90538 1.21236 1.00532 0.98006 0.93945 1.21916 0.96573 0.97606 0.98518 1.21745 0.90463 0.95212 0.99880 1.59916 1.04604 1.61750 1.04775 1.20778 0.97811 0.98102 0.89512 1.21306 0.99627 1.00167 0.98217 0.96220 0.91041 0.93233 0.95683 0.92883 0.92812 0.93515 0.90361 0.96857 0.92442 0.91639 0.92493 0.92396 0.92692 0.94354 0.84523 0.92352 0.95056 0.91397 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.50 37.16 0.35 -2.28 16 2 C -0.12 -2.54 4.44 -26.73 -0.12 -2.66 16 3 C 0.19 4.39 1.07 -68.87 -0.07 4.31 16 4 H -0.01 -0.18 5.20 -51.92 -0.27 -0.45 16 5 C -0.50 -13.68 7.13 -34.44 -0.25 -13.93 16 6 H 0.08 2.39 6.89 -52.48 -0.36 2.03 16 7 C 0.08 2.16 5.31 -17.82 -0.09 2.06 16 8 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 9 Si 0.86 21.10 25.79 -169.99 -4.38 16.71 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.25 -5.93 5.40 56.52 0.30 -5.63 16 13 N -0.52 -10.49 3.66 -228.84 -0.84 -11.33 16 14 C 0.03 0.65 8.65 60.06 0.52 1.17 16 15 C 0.09 1.47 1.45 -68.16 -0.10 1.37 16 16 H 0.08 1.37 4.94 -51.93 -0.26 1.12 16 17 C -0.10 -1.50 3.87 -27.30 -0.11 -1.60 16 18 C -0.11 -1.35 6.14 -25.50 -0.16 -1.51 16 19 C 0.06 0.67 5.89 -4.67 -0.03 0.64 16 20 N -0.68 -8.06 6.40 -118.15 -0.76 -8.81 16 21 C 0.07 0.89 5.80 -6.71 -0.04 0.85 16 22 C -0.15 -2.46 3.78 -29.32 -0.11 -2.57 16 23 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 1.71 7.19 -51.93 -0.37 1.34 16 25 H 0.05 0.99 7.51 -51.93 -0.39 0.60 16 26 H 0.02 0.50 6.40 -51.93 -0.33 0.17 16 27 H 0.05 1.24 4.61 -51.93 -0.24 1.00 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.05 0.80 7.07 -51.93 -0.37 0.43 16 30 H 0.08 1.69 6.27 -51.93 -0.33 1.36 16 31 H 0.01 0.25 6.62 -51.93 -0.34 -0.10 16 32 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 33 H 0.06 1.05 7.84 -51.93 -0.41 0.65 16 34 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.48 6.50 -51.93 -0.34 0.15 16 38 H 0.34 3.21 8.89 -39.29 -0.35 2.86 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.03 0.43 7.24 -51.93 -0.38 0.06 16 41 H 0.07 1.23 6.12 -51.92 -0.32 0.91 16 42 H 0.07 1.07 6.81 -51.93 -0.35 0.72 16 LS Contribution 294.88 15.07 4.44 4.44 Total: -1.00 -28.69 294.88 -8.08 -36.77 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.12 Total: 2.35 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -0.20 Total: -14.15 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.82 Total: -46.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.38 Total: 16.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.69 -8.08 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300236943.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.316 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds