Wall clock time and date at job start Mon Mar 30 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 H 1.08994 * 109.47604 * 305.98056 * 3 2 1 5 5 C 1.50704 * 109.47022 * 185.97220 * 3 2 1 6 6 H 1.08000 * 120.00044 * 240.00679 * 5 3 2 7 7 C 1.37874 * 119.99531 * 60.00531 * 5 3 2 8 8 N 1.31512 * 120.00265 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46951 * 90.00210 * 9 7 5 11 11 H 1.48495 * 109.47323 * 210.00085 * 9 7 5 12 12 H 1.48497 * 109.47411 * 330.00532 * 9 7 5 13 13 N 1.46900 * 109.46723 * 65.97985 * 3 2 1 14 14 C 1.48107 * 111.00388 * 34.52821 * 13 3 2 15 15 C 1.46140 * 112.19144 * 156.49263 * 14 13 3 16 16 C 1.54253 * 111.90525 * 60.87003 * 15 14 13 17 17 N 1.44260 * 108.63741 * 281.37962 * 16 15 14 18 18 C 1.46904 * 110.99465 * 219.84436 * 17 16 15 19 19 C 1.48198 * 114.26850 * 93.39771 * 17 16 15 20 20 C 1.44265 * 110.99748 * 271.88821 * 13 3 2 21 21 H 1.08995 * 108.86528 * 96.33981 * 20 13 3 22 22 C 1.52997 * 108.86727 * 337.92273 * 20 13 3 23 23 H 1.08994 * 109.47515 * 186.40212 * 1 2 3 24 24 H 1.09003 * 109.47038 * 306.40505 * 1 2 3 25 25 H 1.09003 * 109.47102 * 66.40311 * 1 2 3 26 26 H 1.09003 * 109.46475 * 240.00427 * 2 1 3 27 27 H 1.08993 * 109.47269 * 120.00848 * 2 1 3 28 28 H 0.97002 * 119.99879 * 179.97438 * 8 7 5 29 29 H 1.08998 * 108.93999 * 277.19372 * 14 13 3 30 30 H 1.09003 * 108.93639 * 35.88992 * 14 13 3 31 31 H 1.08996 * 108.99477 * 181.49070 * 15 14 13 32 32 H 1.09001 * 108.99745 * 300.32276 * 15 14 13 33 33 H 1.08998 * 109.60928 * 41.12215 * 16 15 14 34 34 H 1.08992 * 109.60824 * 161.63450 * 16 15 14 35 35 H 1.08995 * 109.47183 * 56.04925 * 18 17 16 36 36 H 1.09000 * 109.46646 * 176.05066 * 18 17 16 37 37 H 1.09000 * 109.47005 * 296.04596 * 18 17 16 38 38 H 1.09001 * 108.81969 * 78.98035 * 19 17 16 39 39 H 1.08996 * 108.82226 * 197.28301 * 19 17 16 40 40 H 1.09002 * 109.46546 * 62.94430 * 22 20 13 41 41 H 1.08996 * 109.47335 * 182.94983 * 22 20 13 42 42 H 1.09006 * 109.47039 * 302.95045 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5920 1.9864 -0.8315 5 6 3.5398 1.4450 -0.1478 6 1 4.1575 1.8851 0.6211 7 6 4.1233 0.8855 -1.2647 8 7 3.3711 0.3500 -2.2012 9 14 5.9822 0.8892 -1.4484 10 1 6.5419 -0.3458 -0.8428 11 1 6.3372 0.9386 -2.8894 12 1 6.5455 2.0777 -0.7588 13 7 1.6717 2.0920 1.2651 14 6 1.7098 1.1270 2.3880 15 6 1.8966 1.7882 3.6778 16 6 0.7477 2.7676 3.9943 17 7 0.9617 3.9850 3.2506 18 6 0.6234 5.1630 4.0606 19 6 0.2728 4.0267 1.9391 20 6 0.3632 2.6930 1.1758 21 1 -0.3713 2.0008 1.5874 22 6 0.0328 2.9425 -0.2971 23 1 -0.3634 -1.0212 0.1146 24 1 -0.3633 0.6099 0.8271 25 1 -0.3633 0.4114 -0.9418 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.7816 -0.0433 -2.9871 29 1 0.7728 0.5705 2.4082 30 1 2.5318 0.4295 2.2272 31 1 1.9435 1.0315 4.4609 32 1 2.8368 2.3396 3.6610 33 1 -0.2033 2.3226 3.7017 34 1 0.7384 2.9878 5.0617 35 1 1.2001 5.1458 4.9853 36 1 0.8599 6.0683 3.5015 37 1 -0.4408 5.1487 4.2957 38 1 -0.7776 4.2686 2.1012 39 1 0.7223 4.8113 1.3305 40 1 -0.0102 1.9904 -0.8260 41 1 -0.9317 3.4444 -0.3731 42 1 0.8052 3.5704 -0.7414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300537606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:04 Heat of formation + Delta-G solvation = 41.887816 kcal Electronic energy + Delta-G solvation = -19347.756856 eV Core-core repulsion = 16750.185085 eV Total energy + Delta-G solvation = -2597.571772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56556 -36.52763 -33.15298 -32.90286 -31.01552 -29.06455 -27.01559 -26.43077 -25.37119 -23.02235 -22.25328 -20.81795 -19.36801 -18.17141 -16.53130 -15.77061 -15.22331 -15.08417 -14.52107 -14.25749 -13.91665 -13.26178 -12.92147 -12.56516 -12.41656 -12.10388 -12.04525 -11.79119 -11.40657 -11.16782 -11.11270 -10.99327 -10.78317 -10.57736 -10.49667 -10.36578 -10.21283 -9.97069 -9.79632 -9.46789 -9.30766 -8.70284 -8.13646 -7.74306 -6.89665 -5.90440 -3.91239 3.37333 3.43915 3.49499 4.24821 4.51045 4.95752 5.29828 5.38707 5.39775 5.47363 5.59264 5.66292 5.71407 5.76136 5.90394 5.98812 6.02132 6.09381 6.15283 6.21247 6.24657 6.36367 6.40428 6.45630 6.50486 6.74873 6.81253 6.82729 6.94121 7.00597 7.13387 7.34500 7.47770 7.60113 7.68280 7.80912 8.01658 8.36583 8.53737 8.78623 9.16855 9.72549 11.15951 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.008338 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.040854 B = 3357.319408 C = 3685.283712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.154 4.154 3 C 0.196 3.804 4 H 0.062 0.938 5 C -0.485 4.485 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.893 3.107 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.504 5.504 14 C 0.063 3.937 15 C -0.111 4.111 16 C 0.071 3.929 17 N -0.542 5.542 18 C 0.033 3.967 19 C 0.080 3.920 20 C 0.085 3.915 21 H 0.032 0.968 22 C -0.168 4.168 23 H 0.029 0.971 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.258 0.742 29 H 0.018 0.982 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.013 0.987 38 H 0.019 0.981 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.037 0.963 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 4.008 8.767 12.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.193 4.193 3 C 0.090 3.910 4 H 0.080 0.920 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.228 5.228 14 C -0.065 4.065 15 C -0.149 4.149 16 C -0.058 4.058 17 N -0.266 5.266 18 C -0.115 4.115 19 C -0.048 4.048 20 C -0.025 4.025 21 H 0.049 0.951 22 C -0.225 4.225 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.056 0.944 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.488 4.315 8.577 11.588 hybrid contribution -0.475 -0.739 -0.135 0.889 sum -6.963 3.576 8.442 11.512 Atomic orbital electron populations 1.22296 0.99931 0.99233 1.00357 1.22323 0.91427 1.02488 1.03043 1.19847 0.95760 0.88981 0.86423 0.92035 1.21216 0.91350 1.35497 1.04326 0.92047 1.24912 0.97824 0.95856 0.95987 1.69867 1.34476 1.40094 1.09544 0.86579 0.86133 0.78278 0.76893 1.21041 1.21544 1.19921 1.61761 1.23430 1.32014 1.05611 1.20969 0.99922 0.94310 0.91276 1.20672 0.99844 0.97490 0.96909 1.21758 0.97285 0.90798 0.95935 1.60303 1.60856 1.01721 1.03744 1.22344 0.97598 0.93962 0.97603 1.22542 0.93862 0.99067 0.89316 1.21425 0.91978 0.94237 0.94875 0.95050 1.22517 0.99884 1.03719 0.96408 0.95153 0.93497 0.93330 0.88478 0.94251 0.93250 0.96425 0.90616 0.92920 0.90467 0.95201 0.92477 0.91919 0.91884 0.96822 0.96302 0.91068 0.89695 0.94379 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 8.13 37.16 0.30 -2.85 16 2 C -0.15 -3.55 4.74 -26.73 -0.13 -3.68 16 3 C 0.20 4.72 1.64 -68.86 -0.11 4.61 16 4 H 0.06 1.58 4.31 -51.93 -0.22 1.36 16 5 C -0.48 -13.25 8.52 -34.44 -0.29 -13.55 16 6 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.33 11.29 55.43 0.63 -24.71 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.50 -10.65 4.22 -224.53 -0.95 -11.60 16 14 C 0.06 1.21 3.43 -6.41 -0.02 1.19 16 15 C -0.11 -1.84 5.66 -29.33 -0.17 -2.00 16 16 C 0.07 1.07 5.42 -4.58 -0.02 1.04 16 17 N -0.54 -8.69 4.40 -242.55 -1.07 -9.75 16 18 C 0.03 0.42 9.33 60.07 0.56 0.98 16 19 C 0.08 1.32 5.14 -2.62 -0.01 1.31 16 20 C 0.09 1.56 1.46 -68.63 -0.10 1.46 16 21 H 0.03 0.58 4.66 -51.93 -0.24 0.34 16 22 C -0.17 -3.05 7.29 37.16 0.27 -2.78 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.87 3.51 -51.93 -0.18 0.69 16 25 H 0.05 0.94 6.42 -51.93 -0.33 0.61 16 26 H 0.10 2.56 5.93 -51.93 -0.31 2.25 16 27 H 0.04 0.90 5.76 -51.93 -0.30 0.60 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.02 0.33 5.83 -51.93 -0.30 0.03 16 30 H 0.08 1.61 6.38 -51.93 -0.33 1.28 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.42 8.12 -51.93 -0.42 1.00 16 33 H 0.03 0.46 6.96 -51.93 -0.36 0.10 16 34 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 35 H 0.06 0.73 7.96 -51.93 -0.41 0.31 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 38 H 0.02 0.28 8.04 -51.93 -0.42 -0.13 16 39 H 0.07 1.22 7.97 -51.93 -0.41 0.80 16 40 H 0.08 1.66 3.28 -51.93 -0.17 1.49 16 41 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.34 7.49 -51.93 -0.39 0.96 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -27.80 293.76 -8.66 -36.46 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -6.86 Total: 1.44 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 0.18 Total: -12.87 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -1.39 Total: -46.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.80 -8.66 -36.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300537606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.352 kcal (2) G-P(sol) polarization free energy of solvation -27.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds