Wall clock time and date at job start Mon Mar 30 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 H 1.08994 * 109.47604 * 305.98056 * 3 2 1 5 5 C 1.50704 * 109.47022 * 185.97220 * 3 2 1 6 6 H 1.08000 * 120.00044 * 240.00679 * 5 3 2 7 7 C 1.37874 * 119.99531 * 60.00531 * 5 3 2 8 8 N 1.31512 * 120.00265 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46951 * 90.00210 * 9 7 5 11 11 H 1.48495 * 109.47323 * 210.00085 * 9 7 5 12 12 H 1.48497 * 109.47411 * 330.00532 * 9 7 5 13 13 N 1.46900 * 109.46723 * 65.97985 * 3 2 1 14 14 C 1.48107 * 111.00388 * 34.52821 * 13 3 2 15 15 C 1.46140 * 112.19144 * 156.49263 * 14 13 3 16 16 C 1.54253 * 111.90525 * 60.87003 * 15 14 13 17 17 N 1.44260 * 108.63741 * 281.37962 * 16 15 14 18 18 C 1.46904 * 110.99465 * 219.84436 * 17 16 15 19 19 C 1.48198 * 114.26850 * 93.39771 * 17 16 15 20 20 C 1.44265 * 110.99748 * 271.88821 * 13 3 2 21 21 H 1.08995 * 108.86528 * 96.33981 * 20 13 3 22 22 C 1.52997 * 108.86727 * 337.92273 * 20 13 3 23 23 H 1.08994 * 109.47515 * 186.40212 * 1 2 3 24 24 H 1.09003 * 109.47038 * 306.40505 * 1 2 3 25 25 H 1.09003 * 109.47102 * 66.40311 * 1 2 3 26 26 H 1.09003 * 109.46475 * 240.00427 * 2 1 3 27 27 H 1.08993 * 109.47269 * 120.00848 * 2 1 3 28 28 H 0.97002 * 119.99879 * 179.97438 * 8 7 5 29 29 H 1.08998 * 108.93999 * 277.19372 * 14 13 3 30 30 H 1.09003 * 108.93639 * 35.88992 * 14 13 3 31 31 H 1.08996 * 108.99477 * 181.49070 * 15 14 13 32 32 H 1.09001 * 108.99745 * 300.32276 * 15 14 13 33 33 H 1.08998 * 109.60928 * 41.12215 * 16 15 14 34 34 H 1.08992 * 109.60824 * 161.63450 * 16 15 14 35 35 H 1.08995 * 109.47183 * 56.04925 * 18 17 16 36 36 H 1.09000 * 109.46646 * 176.05066 * 18 17 16 37 37 H 1.09000 * 109.47005 * 296.04596 * 18 17 16 38 38 H 1.09001 * 108.81969 * 78.98035 * 19 17 16 39 39 H 1.08996 * 108.82226 * 197.28301 * 19 17 16 40 40 H 1.09002 * 109.46546 * 62.94430 * 22 20 13 41 41 H 1.08996 * 109.47335 * 182.94983 * 22 20 13 42 42 H 1.09006 * 109.47039 * 302.95045 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5920 1.9864 -0.8315 5 6 3.5398 1.4450 -0.1478 6 1 4.1575 1.8851 0.6211 7 6 4.1233 0.8855 -1.2647 8 7 3.3711 0.3500 -2.2012 9 14 5.9822 0.8892 -1.4484 10 1 6.5419 -0.3458 -0.8428 11 1 6.3372 0.9386 -2.8894 12 1 6.5455 2.0777 -0.7588 13 7 1.6717 2.0920 1.2651 14 6 1.7098 1.1270 2.3880 15 6 1.8966 1.7882 3.6778 16 6 0.7477 2.7676 3.9943 17 7 0.9617 3.9850 3.2506 18 6 0.6234 5.1630 4.0606 19 6 0.2728 4.0267 1.9391 20 6 0.3632 2.6930 1.1758 21 1 -0.3713 2.0008 1.5874 22 6 0.0328 2.9425 -0.2971 23 1 -0.3634 -1.0212 0.1146 24 1 -0.3633 0.6099 0.8271 25 1 -0.3633 0.4114 -0.9418 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8898 28 1 3.7816 -0.0433 -2.9871 29 1 0.7728 0.5705 2.4082 30 1 2.5318 0.4295 2.2272 31 1 1.9435 1.0315 4.4609 32 1 2.8368 2.3396 3.6610 33 1 -0.2033 2.3226 3.7017 34 1 0.7384 2.9878 5.0617 35 1 1.2001 5.1458 4.9853 36 1 0.8599 6.0683 3.5015 37 1 -0.4408 5.1487 4.2957 38 1 -0.7776 4.2686 2.1012 39 1 0.7223 4.8113 1.3305 40 1 -0.0102 1.9904 -0.8260 41 1 -0.9317 3.4444 -0.3731 42 1 0.8052 3.5704 -0.7414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300537606.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:04 Heat of formation + Delta-G solvation = 23.691582 kcal Electronic energy + Delta-G solvation = -19348.545904 eV Core-core repulsion = 16750.185085 eV Total energy + Delta-G solvation = -2598.360819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09001 -37.91007 -34.81849 -34.54528 -32.77300 -30.62166 -28.66335 -27.78178 -26.83507 -24.85054 -23.59740 -22.40343 -20.79747 -19.83041 -18.41215 -17.32252 -16.79660 -16.54845 -16.27580 -15.54054 -15.44292 -14.92080 -14.36833 -14.07962 -13.70322 -13.59880 -13.46715 -13.23626 -13.01405 -12.89414 -12.76837 -12.58054 -12.46840 -12.24120 -12.06962 -11.83368 -11.81417 -11.65155 -11.32877 -11.13916 -11.07784 -10.67488 -10.14945 -8.90829 -8.55272 -8.01045 -6.08448 1.42000 1.43616 1.54079 2.47931 3.06766 3.25776 3.45802 4.05008 4.11188 4.16250 4.21742 4.41707 4.47566 4.53652 4.57283 4.60518 4.67046 4.69430 4.77066 4.83216 4.84005 4.93622 5.05379 5.08982 5.10366 5.17438 5.22997 5.28116 5.38105 5.43446 5.49591 5.66690 5.71631 5.85952 5.94947 6.34167 6.45327 6.52273 6.72819 7.00245 7.07338 7.59341 9.02773 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025991 B = 0.008338 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.040854 B = 3357.319408 C = 3685.283712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.201 3.799 4 H 0.045 0.955 5 C -0.502 4.502 6 H 0.043 0.957 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.518 5.518 14 C 0.069 3.931 15 C -0.108 4.108 16 C 0.076 3.924 17 N -0.567 5.567 18 C 0.035 3.965 19 C 0.085 3.915 20 C 0.084 3.916 21 H 0.039 0.961 22 C -0.161 4.161 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.258 0.742 29 H 0.025 0.975 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.042 0.958 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.492 4.594 10.324 14.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.095 3.905 4 H 0.062 0.938 5 C -0.541 4.541 6 H 0.061 0.939 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.242 5.242 14 C -0.059 4.059 15 C -0.147 4.147 16 C -0.052 4.052 17 N -0.292 5.292 18 C -0.112 4.112 19 C -0.043 4.043 20 C -0.026 4.026 21 H 0.057 0.943 22 C -0.219 4.219 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.659 4.912 10.150 13.631 hybrid contribution -0.111 -0.902 -0.598 1.088 sum -7.770 4.010 9.552 12.950 Atomic orbital electron populations 1.22141 0.96931 1.00561 1.00887 1.22124 0.94065 1.01330 1.01002 1.19595 0.93869 0.89514 0.87538 0.93782 1.21474 0.93279 1.35369 1.03948 0.93907 1.25548 1.01528 0.95709 0.95843 1.69985 1.35758 1.40544 1.09771 0.85708 0.81755 0.78154 0.76871 1.20554 1.21034 1.20016 1.61707 1.25582 1.32206 1.04663 1.20943 0.99011 0.93893 0.92004 1.20641 0.99687 0.98321 0.96016 1.21716 0.96183 0.89980 0.97321 1.60236 1.61627 1.03185 1.04118 1.22375 0.98742 0.92568 0.97555 1.22406 0.95178 0.97144 0.89538 1.21507 0.90500 0.95255 0.95311 0.94336 1.22393 1.00754 1.02681 0.96034 0.93523 0.92200 0.93377 0.91872 0.94779 0.93311 0.95677 0.93581 0.90414 0.92702 0.95019 0.89826 0.90714 0.91777 0.95301 0.94007 0.92251 0.91353 0.91208 0.93695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.67 8.13 71.98 0.59 -5.09 16 2 C -0.15 -6.86 4.74 30.60 0.14 -6.72 16 3 C 0.20 9.96 1.64 44.17 0.07 10.03 16 4 H 0.04 2.35 4.31 -2.39 -0.01 2.34 16 5 C -0.50 -28.27 8.52 25.60 0.22 -28.05 16 6 H 0.04 2.51 7.81 -2.91 -0.02 2.48 16 7 C 0.01 0.63 5.29 84.65 0.45 1.08 16 8 N -0.92 -53.03 11.29 21.45 0.24 -52.78 16 9 Si 0.95 45.18 29.54 68.60 2.03 47.20 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 N -0.52 -21.90 4.22 -864.27 -3.65 -25.55 16 14 C 0.07 2.63 3.43 83.96 0.29 2.92 16 15 C -0.11 -3.42 5.66 28.91 0.16 -3.26 16 16 C 0.08 2.07 5.42 87.22 0.47 2.54 16 17 N -0.57 -16.76 4.40 -921.28 -4.05 -20.81 16 18 C 0.04 0.78 9.33 127.69 1.19 1.97 16 19 C 0.09 2.63 5.14 86.37 0.44 3.08 16 20 C 0.08 2.97 1.46 45.72 0.07 3.04 16 21 H 0.04 1.32 4.66 -2.39 -0.01 1.31 16 22 C -0.16 -5.74 7.29 71.98 0.52 -5.22 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 24 H 0.06 2.12 3.51 -2.39 -0.01 2.11 16 25 H 0.05 1.84 6.42 -2.39 -0.02 1.82 16 26 H 0.06 3.42 5.93 -2.39 -0.01 3.41 16 27 H 0.03 1.60 5.76 -2.39 -0.01 1.58 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.03 0.91 5.83 -2.39 -0.01 0.90 16 30 H 0.05 2.00 6.38 -2.39 -0.02 1.99 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 33 H 0.03 0.86 6.96 -2.39 -0.02 0.84 16 34 H 0.08 1.84 7.51 -2.39 -0.02 1.82 16 35 H 0.07 1.48 7.96 -2.39 -0.02 1.46 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.04 1.10 8.04 -2.39 -0.02 1.09 16 39 H 0.06 1.96 7.97 -2.39 -0.02 1.94 16 40 H 0.07 2.66 3.28 -2.39 -0.01 2.65 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.79 7.49 -2.38 -0.02 1.77 16 Total: -1.00 -60.55 293.76 0.18 -60.37 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.99 Total: 15.25 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 4.62 Total: -23.68 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -7.46 Total: -99.15 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -60.55 0.18 -60.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300537606.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.064 kcal (2) G-P(sol) polarization free energy of solvation -60.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds