Wall clock time and date at job start Mon Mar 30 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46743 * 2 1 4 4 H 1.09001 * 109.46842 * 175.57866 * 3 2 1 5 5 C 1.50699 * 109.47133 * 55.57654 * 3 2 1 6 6 H 1.08000 * 120.00146 * 239.99622 * 5 3 2 7 7 C 1.37873 * 120.00082 * 59.99992 * 5 3 2 8 8 N 1.31521 * 119.99929 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47084 * 89.99465 * 9 7 5 11 11 H 1.48502 * 109.47004 * 209.99857 * 9 7 5 12 12 H 1.48504 * 109.46730 * 329.99798 * 9 7 5 13 13 N 1.46901 * 109.47301 * 295.57730 * 3 2 1 14 14 C 1.46904 * 110.99615 * 272.93630 * 13 3 2 15 15 H 1.09004 * 109.52478 * 34.89574 * 14 13 3 16 16 C 1.53118 * 109.52445 * 274.76664 * 14 13 3 17 17 C 1.53046 * 109.27655 * 182.44229 * 16 14 13 18 18 N 1.46844 * 109.52248 * 59.17964 * 17 16 14 19 19 C 1.46845 * 111.19898 * 298.25712 * 18 17 16 20 20 C 1.53043 * 109.51595 * 61.74708 * 19 18 17 21 21 C 1.52997 * 109.49826 * 60.76050 * 20 19 18 22 22 C 1.53002 * 109.50251 * 180.87236 * 20 19 18 23 23 H 1.09003 * 109.47275 * 54.24659 * 1 2 3 24 24 H 1.09001 * 109.46732 * 174.24786 * 1 2 3 25 25 H 1.08997 * 109.46822 * 294.24606 * 1 2 3 26 26 H 1.09004 * 109.46820 * 240.00486 * 2 1 3 27 27 H 1.09000 * 109.47087 * 119.99816 * 2 1 3 28 28 H 0.97002 * 119.99887 * 179.97438 * 8 7 5 29 29 H 1.00893 * 110.99902 * 148.99055 * 13 3 2 30 30 H 1.08996 * 109.50434 * 62.50418 * 16 14 13 31 31 H 1.09000 * 109.53451 * 302.40261 * 16 14 13 32 32 H 1.08999 * 109.46295 * 299.16527 * 17 16 14 33 33 H 1.08995 * 109.45108 * 179.18861 * 17 16 14 34 34 H 1.00894 * 111.00238 * 174.15842 * 18 17 16 35 35 H 1.08998 * 109.46629 * 181.76272 * 19 18 17 36 36 H 1.08999 * 109.46443 * 301.73769 * 19 18 17 37 37 H 1.09000 * 109.47855 * 59.99929 * 21 20 19 38 38 H 1.09008 * 109.46794 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47090 * 299.99378 * 21 20 19 40 40 H 1.09008 * 109.46851 * 60.00486 * 22 20 19 41 41 H 1.08997 * 109.47162 * 179.97438 * 22 20 19 42 42 H 1.08997 * 109.47587 * 300.00211 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1271 1.4436 0.0792 5 6 1.4501 2.1839 1.1720 6 1 0.8389 3.0585 1.0055 7 6 1.6908 1.7455 2.4568 8 7 2.4348 0.6801 2.6596 9 14 0.9591 2.6639 3.9096 10 1 -0.3753 2.0977 4.2319 11 1 1.8542 2.5227 5.0862 12 1 0.8168 4.1015 3.5655 13 7 1.6394 2.1036 -1.2493 14 6 2.6292 1.8696 -2.3093 15 1 3.0489 0.8694 -2.2016 16 6 3.7488 2.9086 -2.2025 17 6 4.7445 2.6978 -3.3456 18 7 4.0497 2.8310 -4.6324 19 6 3.0012 1.8132 -4.7776 20 6 1.9535 1.9979 -3.6774 21 6 1.3174 3.3834 -3.8053 22 6 0.8726 0.9239 -3.8159 23 1 -0.3634 0.6005 -0.8340 24 1 -0.3633 -1.0225 -0.1030 25 1 -0.3633 0.4220 0.9370 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 2.6045 0.3719 3.5636 29 1 1.4914 3.0910 -1.1045 30 1 4.2615 2.7942 -1.2476 31 1 3.3241 3.9102 -2.2699 32 1 5.1794 1.7012 -3.2692 33 1 5.5352 3.4451 -3.2806 34 1 4.7018 2.7906 -5.4012 35 1 2.5259 1.9180 -5.7529 36 1 3.4443 0.8209 -4.6943 37 1 0.8396 3.4753 -4.7807 38 1 0.5716 3.5146 -3.0212 39 1 2.0880 4.1477 -3.7047 40 1 1.3267 -0.0627 -3.7229 41 1 0.1270 1.0556 -3.0318 42 1 0.3944 1.0133 -4.7913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300888665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:06 Heat of formation + Delta-G solvation = -16.452199 kcal Electronic energy + Delta-G solvation = -18978.846269 eV Core-core repulsion = 16378.744685 eV Total energy + Delta-G solvation = -2600.101584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.39398 -35.75298 -33.61447 -32.39971 -30.95066 -28.96997 -26.77454 -26.19819 -25.43741 -23.28689 -22.33281 -21.24416 -18.96550 -18.01650 -16.35674 -16.08324 -14.92427 -14.45753 -14.32606 -14.14764 -13.82004 -13.42371 -13.01650 -12.86738 -12.55895 -11.88479 -11.73190 -11.60473 -11.44497 -11.39120 -11.19969 -10.91502 -10.85885 -10.68744 -10.41257 -10.28340 -10.13204 -10.04392 -9.74601 -9.46399 -9.26450 -8.72777 -8.43657 -8.28602 -7.09276 -5.99024 -4.03517 3.30678 3.37571 3.40291 4.37134 4.42532 5.06751 5.10475 5.25072 5.33367 5.42213 5.55709 5.65998 5.80021 5.86538 5.90494 6.00718 6.05480 6.17478 6.31474 6.37171 6.44007 6.56360 6.57509 6.60164 6.73461 6.74757 6.84683 6.93179 6.98401 7.20129 7.28994 7.39840 7.51094 7.56971 7.79401 7.84736 7.90555 8.30404 8.47575 8.75247 9.07559 9.61110 11.07061 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.007125 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.254000 B = 3928.854756 C = 4219.679004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 C 0.217 3.783 4 H -0.001 1.001 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.675 5.675 14 C 0.101 3.899 15 H 0.063 0.937 16 C -0.147 4.147 17 C 0.063 3.937 18 N -0.687 5.687 19 C 0.067 3.933 20 C -0.048 4.048 21 C -0.127 4.127 22 C -0.129 4.129 23 H 0.047 0.953 24 H 0.010 0.990 25 H 0.051 0.949 26 H 0.008 0.992 27 H 0.081 0.919 28 H 0.259 0.741 29 H 0.330 0.670 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.066 0.934 34 H 0.334 0.666 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.038 0.962 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 1.964 -12.318 12.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C 0.109 3.891 4 H 0.017 0.983 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.304 5.304 14 C -0.010 4.010 15 H 0.081 0.919 16 C -0.186 4.186 17 C -0.067 4.067 18 N -0.317 5.317 19 C -0.062 4.062 20 C -0.049 4.049 21 C -0.185 4.185 22 C -0.187 4.187 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.095 0.905 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.817 1.805 -12.099 12.261 hybrid contribution 1.034 0.114 1.025 1.460 sum 1.850 1.919 -11.074 11.391 Atomic orbital electron populations 1.21438 0.97561 0.96933 1.01528 1.21397 0.95076 0.98356 0.98869 1.19093 0.93500 0.91590 0.84871 0.98323 1.21202 1.31302 1.11852 0.90534 0.92433 1.24871 0.95177 0.95030 0.98722 1.69901 1.38286 1.23599 1.21042 0.86622 0.79021 0.80208 0.82292 1.20707 1.21423 1.20022 1.60737 1.44303 1.16770 1.08639 1.21506 0.90435 0.97262 0.91827 0.91880 1.22383 0.97853 1.01135 0.97247 1.21873 0.95951 0.99063 0.89834 1.60267 1.16060 1.51446 1.03957 1.22030 0.93049 0.92130 0.99032 1.20512 0.94346 0.96333 0.93741 1.21701 1.00312 0.96139 1.00299 1.21708 0.98924 0.97253 1.00828 0.93422 0.97110 0.92999 0.97333 0.90111 0.93086 0.85160 0.91522 0.91185 0.95662 0.91519 0.84886 0.91371 0.95741 0.94284 0.92279 0.92134 0.93844 0.90500 0.94305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.42 37.16 0.35 -2.29 16 2 C -0.10 -2.37 5.55 -26.73 -0.15 -2.51 16 3 C 0.22 5.25 2.11 -68.86 -0.15 5.10 16 4 H 0.00 -0.02 7.16 -51.93 -0.37 -0.39 16 5 C -0.51 -13.47 7.23 -34.44 -0.25 -13.72 16 6 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.05 11.37 55.43 0.63 -24.42 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -13.56 4.20 -100.82 -0.42 -13.98 16 14 C 0.10 1.77 1.45 -67.59 -0.10 1.67 16 15 H 0.06 1.24 7.26 -51.93 -0.38 0.86 16 16 C -0.15 -2.41 4.98 -26.65 -0.13 -2.54 16 17 C 0.06 0.86 6.55 -3.83 -0.03 0.84 16 18 N -0.69 -8.66 6.13 -113.82 -0.70 -9.36 16 19 C 0.07 0.88 5.27 -3.83 -0.02 0.86 16 20 C -0.05 -0.72 0.59 -154.43 -0.09 -0.81 16 21 C -0.13 -1.86 7.72 37.16 0.29 -1.57 16 22 C -0.13 -1.94 8.35 37.16 0.31 -1.63 16 23 H 0.05 1.02 7.19 -51.93 -0.37 0.65 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.05 1.26 7.31 -51.93 -0.38 0.88 16 26 H 0.01 0.18 7.55 -51.93 -0.39 -0.21 16 27 H 0.08 2.17 6.20 -51.93 -0.32 1.85 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.33 6.73 7.13 -39.30 -0.28 6.45 16 30 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 31 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.33 3.46 8.90 -39.29 -0.35 3.11 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.92 7.18 -51.92 -0.37 0.55 16 39 H 0.06 0.91 6.01 -51.93 -0.31 0.60 16 40 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.08 1.30 7.30 -51.93 -0.38 0.92 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 311.33 15.07 4.69 4.69 Total: -1.00 -26.70 311.33 -8.43 -35.13 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -7.55 Total: 6.78 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.06 Total: -14.97 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.49 Total: -47.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.70 -8.43 -35.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300888665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.683 kcal (2) G-P(sol) polarization free energy of solvation -26.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds