Wall clock time and date at job start Mon Mar 30 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46743 * 2 1 4 4 H 1.09001 * 109.46842 * 175.57866 * 3 2 1 5 5 C 1.50699 * 109.47133 * 55.57654 * 3 2 1 6 6 H 1.08000 * 120.00146 * 239.99622 * 5 3 2 7 7 C 1.37873 * 120.00082 * 59.99992 * 5 3 2 8 8 N 1.31521 * 119.99929 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47084 * 89.99465 * 9 7 5 11 11 H 1.48502 * 109.47004 * 209.99857 * 9 7 5 12 12 H 1.48504 * 109.46730 * 329.99798 * 9 7 5 13 13 N 1.46901 * 109.47301 * 295.57730 * 3 2 1 14 14 C 1.46904 * 110.99615 * 272.93630 * 13 3 2 15 15 H 1.09004 * 109.52478 * 34.89574 * 14 13 3 16 16 C 1.53118 * 109.52445 * 274.76664 * 14 13 3 17 17 C 1.53046 * 109.27655 * 182.44229 * 16 14 13 18 18 N 1.46844 * 109.52248 * 59.17964 * 17 16 14 19 19 C 1.46845 * 111.19898 * 298.25712 * 18 17 16 20 20 C 1.53043 * 109.51595 * 61.74708 * 19 18 17 21 21 C 1.52997 * 109.49826 * 60.76050 * 20 19 18 22 22 C 1.53002 * 109.50251 * 180.87236 * 20 19 18 23 23 H 1.09003 * 109.47275 * 54.24659 * 1 2 3 24 24 H 1.09001 * 109.46732 * 174.24786 * 1 2 3 25 25 H 1.08997 * 109.46822 * 294.24606 * 1 2 3 26 26 H 1.09004 * 109.46820 * 240.00486 * 2 1 3 27 27 H 1.09000 * 109.47087 * 119.99816 * 2 1 3 28 28 H 0.97002 * 119.99887 * 179.97438 * 8 7 5 29 29 H 1.00893 * 110.99902 * 148.99055 * 13 3 2 30 30 H 1.08996 * 109.50434 * 62.50418 * 16 14 13 31 31 H 1.09000 * 109.53451 * 302.40261 * 16 14 13 32 32 H 1.08999 * 109.46295 * 299.16527 * 17 16 14 33 33 H 1.08995 * 109.45108 * 179.18861 * 17 16 14 34 34 H 1.00894 * 111.00238 * 174.15842 * 18 17 16 35 35 H 1.08998 * 109.46629 * 181.76272 * 19 18 17 36 36 H 1.08999 * 109.46443 * 301.73769 * 19 18 17 37 37 H 1.09000 * 109.47855 * 59.99929 * 21 20 19 38 38 H 1.09008 * 109.46794 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.47090 * 299.99378 * 21 20 19 40 40 H 1.09008 * 109.46851 * 60.00486 * 22 20 19 41 41 H 1.08997 * 109.47162 * 179.97438 * 22 20 19 42 42 H 1.08997 * 109.47587 * 300.00211 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1271 1.4436 0.0792 5 6 1.4501 2.1839 1.1720 6 1 0.8389 3.0585 1.0055 7 6 1.6908 1.7455 2.4568 8 7 2.4348 0.6801 2.6596 9 14 0.9591 2.6639 3.9096 10 1 -0.3753 2.0977 4.2319 11 1 1.8542 2.5227 5.0862 12 1 0.8168 4.1015 3.5655 13 7 1.6394 2.1036 -1.2493 14 6 2.6292 1.8696 -2.3093 15 1 3.0489 0.8694 -2.2016 16 6 3.7488 2.9086 -2.2025 17 6 4.7445 2.6978 -3.3456 18 7 4.0497 2.8310 -4.6324 19 6 3.0012 1.8132 -4.7776 20 6 1.9535 1.9979 -3.6774 21 6 1.3174 3.3834 -3.8053 22 6 0.8726 0.9239 -3.8159 23 1 -0.3634 0.6005 -0.8340 24 1 -0.3633 -1.0225 -0.1030 25 1 -0.3633 0.4220 0.9370 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 2.6045 0.3719 3.5636 29 1 1.4914 3.0910 -1.1045 30 1 4.2615 2.7942 -1.2476 31 1 3.3241 3.9102 -2.2699 32 1 5.1794 1.7012 -3.2692 33 1 5.5352 3.4451 -3.2806 34 1 4.7018 2.7906 -5.4012 35 1 2.5259 1.9180 -5.7529 36 1 3.4443 0.8209 -4.6943 37 1 0.8396 3.4753 -4.7807 38 1 0.5716 3.5146 -3.0212 39 1 2.0880 4.1477 -3.7047 40 1 1.3267 -0.0627 -3.7229 41 1 0.1270 1.0556 -3.0318 42 1 0.3944 1.0133 -4.7913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300888665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:05 Heat of formation + Delta-G solvation = -33.298551 kcal Electronic energy + Delta-G solvation = -18979.576782 eV Core-core repulsion = 16378.744685 eV Total energy + Delta-G solvation = -2600.832097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69829 -37.48925 -34.95427 -34.03785 -32.76883 -30.51034 -28.08070 -27.87339 -26.79202 -25.19626 -23.77235 -22.46710 -20.85563 -19.41326 -18.15043 -17.30268 -16.87223 -15.81472 -15.65395 -15.59137 -15.45388 -14.88092 -14.58340 -14.37974 -14.01223 -13.67897 -13.44453 -12.97794 -12.84873 -12.69778 -12.65227 -12.56709 -12.40733 -12.32366 -12.10927 -11.91204 -11.75835 -11.47535 -11.30310 -11.21114 -10.88959 -10.71648 -10.50343 -9.33748 -8.80896 -8.07658 -6.18672 1.41075 1.42747 1.51436 2.43307 3.21432 3.33236 3.67054 3.86070 3.98760 4.20034 4.26743 4.43554 4.55651 4.61769 4.65972 4.72664 4.79837 4.82555 4.90744 4.93372 5.02561 5.03738 5.10654 5.16803 5.26227 5.34375 5.35763 5.44543 5.50612 5.62998 5.65591 5.70507 5.75913 5.88177 5.95695 6.09756 6.30009 6.57568 6.60442 6.88699 7.11453 7.50148 8.97530 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.007125 C = 0.006634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.254000 B = 3928.854756 C = 4219.679004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.092 4.092 3 C 0.227 3.773 4 H -0.039 1.039 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.665 5.665 14 C 0.102 3.898 15 H 0.038 0.962 16 C -0.142 4.142 17 C 0.069 3.931 18 N -0.684 5.684 19 C 0.071 3.929 20 C -0.045 4.045 21 C -0.120 4.120 22 C -0.125 4.125 23 H 0.056 0.944 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.015 0.985 27 H 0.050 0.950 28 H 0.259 0.741 29 H 0.329 0.671 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.083 0.917 34 H 0.353 0.647 35 H 0.092 0.908 36 H 0.021 0.979 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 2.778 -14.091 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.131 4.131 3 C 0.118 3.882 4 H -0.022 1.022 5 C -0.558 4.558 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.193 1.193 13 N -0.294 5.294 14 C -0.009 4.009 15 H 0.056 0.944 16 C -0.181 4.181 17 C -0.061 4.061 18 N -0.316 5.316 19 C -0.059 4.059 20 C -0.046 4.046 21 C -0.177 4.177 22 C -0.183 4.183 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.039 0.961 33 H 0.102 0.898 34 H 0.172 0.828 35 H 0.110 0.890 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.251 2.628 -13.904 14.152 hybrid contribution 1.240 -0.148 1.536 1.980 sum 1.492 2.480 -12.367 12.701 Atomic orbital electron populations 1.21286 0.96014 0.98204 1.00624 1.21253 0.96288 0.97892 0.97650 1.18827 0.90978 0.92064 0.86289 1.02186 1.21467 1.31004 1.11835 0.91465 0.92599 1.25589 0.95573 0.95758 1.01224 1.70040 1.39415 1.24877 1.21402 0.85678 0.78208 0.79293 0.79188 1.20332 1.21345 1.19313 1.60684 1.45102 1.16301 1.07334 1.21548 0.90540 0.96213 0.92611 0.94359 1.22265 0.97967 1.00633 0.97259 1.21758 0.95441 0.99409 0.89470 1.60207 1.16372 1.51102 1.03891 1.21995 0.92674 0.92130 0.99112 1.20493 0.94896 0.96828 0.92417 1.21621 0.99809 0.95419 1.00858 1.21653 0.98358 0.96804 1.01493 0.92475 0.95104 0.95191 0.96629 0.93147 0.93219 0.85308 0.94414 0.91093 0.96104 0.89828 0.82799 0.89019 0.96035 0.92374 0.93681 0.92534 0.94504 0.92597 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.66 9.42 71.98 0.68 -3.98 16 2 C -0.09 -4.53 5.55 30.60 0.17 -4.36 16 3 C 0.23 11.33 2.11 44.17 0.09 11.42 16 4 H -0.04 -2.24 7.16 -2.39 -0.02 -2.25 16 5 C -0.52 -27.91 7.23 25.60 0.19 -27.73 16 6 H 0.06 2.97 7.59 -2.91 -0.02 2.95 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.92 -53.04 11.37 21.45 0.24 -52.79 16 9 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 N -0.67 -27.13 4.20 -472.89 -1.99 -29.12 16 14 C 0.10 3.58 1.45 44.99 0.07 3.64 16 15 H 0.04 1.54 7.26 -2.39 -0.02 1.52 16 16 C -0.14 -4.68 4.98 30.65 0.15 -4.52 16 17 C 0.07 1.81 6.55 86.33 0.57 2.38 16 18 N -0.68 -15.30 6.13 -514.00 -3.15 -18.45 16 19 C 0.07 1.65 5.27 86.33 0.45 2.11 16 20 C -0.05 -1.28 0.59 -52.13 -0.03 -1.31 16 21 C -0.12 -3.23 7.72 71.98 0.56 -2.67 16 22 C -0.13 -3.52 8.35 71.98 0.60 -2.92 16 23 H 0.06 2.42 7.19 -2.39 -0.02 2.40 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.03 1.44 7.31 -2.39 -0.02 1.42 16 26 H 0.02 0.71 7.55 -2.38 -0.02 0.69 16 27 H 0.05 2.80 6.20 -2.39 -0.01 2.78 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.33 13.57 7.13 -89.70 -0.64 12.93 16 30 H 0.04 1.44 7.51 -2.39 -0.02 1.42 16 31 H 0.07 2.32 6.54 -2.39 -0.02 2.30 16 32 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.35 6.06 8.90 -89.70 -0.80 5.26 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.33 7.18 -2.38 -0.02 1.31 16 39 H 0.06 1.57 6.01 -2.39 -0.01 1.56 16 40 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.05 1.81 7.30 -2.39 -0.02 1.79 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -57.89 311.33 0.62 -57.27 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: -0.45 Total: 23.88 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.94 Total: -26.53 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -4.89 Total: -100.36 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -57.89 0.62 -57.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300888665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.973 kcal (2) G-P(sol) polarization free energy of solvation -57.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds