Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 H 1.09006 * 109.46915 * 305.64237 * 3 2 1 5 5 C 1.50699 * 109.46871 * 185.64732 * 3 2 1 6 6 H 1.08003 * 119.99240 * 239.99682 * 5 3 2 7 7 C 1.37875 * 120.00497 * 59.99635 * 5 3 2 8 8 N 1.31513 * 119.99720 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00025 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47284 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.47131 * 209.99837 * 9 7 5 12 12 H 1.48498 * 109.47418 * 329.99783 * 9 7 5 13 13 N 1.46893 * 109.47056 * 65.64322 * 3 2 1 14 14 C 1.46905 * 110.99613 * 204.42159 * 13 3 2 15 15 H 1.08997 * 109.52513 * 326.43485 * 14 13 3 16 16 C 1.53119 * 109.52177 * 86.56374 * 14 13 3 17 17 C 1.53033 * 109.28137 * 177.62207 * 16 14 13 18 18 N 1.46850 * 109.52204 * 300.81768 * 17 16 14 19 19 C 1.46851 * 111.19614 * 61.74105 * 18 17 16 20 20 C 1.53030 * 109.52412 * 298.25916 * 19 18 17 21 21 C 1.53002 * 109.50542 * 299.23706 * 20 19 18 22 22 C 1.53005 * 109.50690 * 179.12078 * 20 19 18 23 23 H 1.09000 * 109.46954 * 293.73369 * 1 2 3 24 24 H 1.09000 * 109.46857 * 53.73084 * 1 2 3 25 25 H 1.09000 * 109.47367 * 173.73359 * 1 2 3 26 26 H 1.09004 * 109.47080 * 239.99611 * 2 1 3 27 27 H 1.09003 * 109.46754 * 120.00049 * 2 1 3 28 28 H 0.97005 * 119.99693 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00383 * 328.37297 * 13 3 2 30 30 H 1.09002 * 109.50335 * 297.56363 * 16 14 13 31 31 H 1.09004 * 109.50633 * 57.63891 * 16 14 13 32 32 H 1.08999 * 109.46257 * 60.83347 * 17 16 14 33 33 H 1.09001 * 109.46577 * 180.81568 * 17 16 14 34 34 H 1.00898 * 111.00048 * 185.83667 * 18 17 16 35 35 H 1.09001 * 109.46152 * 58.27533 * 19 18 17 36 36 H 1.09002 * 109.46444 * 178.25134 * 19 18 17 37 37 H 1.09000 * 109.47830 * 179.80013 * 21 20 19 38 38 H 1.09000 * 109.47009 * 299.80975 * 21 20 19 39 39 H 1.09005 * 109.46942 * 59.80243 * 21 20 19 40 40 H 1.08996 * 109.46859 * 300.20052 * 22 20 19 41 41 H 1.09004 * 109.46513 * 60.19310 * 22 20 19 42 42 H 1.08999 * 109.47329 * 180.19093 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4447 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1302 0.8829 -1.2523 8 7 3.3830 0.3455 -2.1918 9 14 5.9901 0.8851 -1.4252 10 1 6.5455 -0.3493 -0.8143 11 1 6.3535 0.9318 -2.8643 12 1 6.5501 2.0744 -0.7344 13 7 1.6648 2.0945 1.2617 14 6 1.5976 3.5532 1.1007 15 1 2.3486 3.8750 0.3793 16 6 0.2054 3.9493 0.6013 17 6 0.1223 5.4734 0.4923 18 7 0.3794 6.0742 1.8073 19 6 1.7285 5.7467 2.2861 20 6 1.8595 4.2307 2.4487 21 6 0.8383 3.7369 3.4755 22 6 3.2720 3.8882 2.9265 23 1 -0.3633 0.4136 0.9408 24 1 -0.3633 0.6080 -0.8286 25 1 -0.3634 -1.0215 -0.1122 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7979 -0.0494 -2.9747 29 1 0.7921 1.7289 1.6121 30 1 0.0298 3.5043 -0.3781 31 1 -0.5483 3.5925 1.3034 32 1 0.8669 5.8276 -0.2207 33 1 -0.8725 5.7595 0.1507 34 1 0.2370 7.0728 1.7827 35 1 2.4655 6.0996 1.5648 36 1 1.9003 6.2311 3.2474 37 1 0.9295 2.6566 3.5883 38 1 1.0252 4.2195 4.4348 39 1 -0.1675 3.9829 3.1349 40 1 3.9987 4.2420 2.1952 41 1 3.4579 4.3708 3.8861 42 1 3.3657 2.8081 3.0389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300888668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = -16.293326 kcal Electronic energy + Delta-G solvation = -18992.721384 eV Core-core repulsion = 16392.626689 eV Total energy + Delta-G solvation = -2600.094695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33461 -35.80056 -33.56012 -32.31220 -31.24299 -29.01434 -26.71882 -26.39625 -25.47348 -23.16498 -21.89376 -21.20838 -19.50910 -17.84203 -16.19783 -16.15452 -14.90679 -14.61117 -14.40760 -14.07710 -13.79105 -13.47414 -12.94582 -12.76058 -12.54907 -12.24920 -11.80269 -11.49056 -11.36922 -11.34007 -11.21313 -10.95139 -10.85517 -10.76246 -10.58537 -10.15945 -10.08341 -9.93098 -9.89271 -9.61815 -9.26543 -8.98201 -8.30838 -8.24641 -7.07372 -5.92882 -3.96295 3.33594 3.40135 3.43821 4.41426 4.47407 5.11383 5.15650 5.29519 5.36425 5.47093 5.60744 5.69918 5.87238 5.91241 5.98802 6.06750 6.11663 6.20495 6.20537 6.24562 6.35215 6.40001 6.46216 6.52345 6.63778 6.68118 6.79502 6.88674 6.98872 7.01823 7.15431 7.24319 7.27663 7.54501 7.59197 7.83552 7.97888 8.40569 8.46395 8.85630 9.12533 9.68520 11.12301 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.008304 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.874282 B = 3370.958251 C = 3846.517392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.676 5.676 14 C 0.107 3.893 15 H 0.075 0.925 16 C -0.147 4.147 17 C 0.063 3.937 18 N -0.687 5.687 19 C 0.067 3.933 20 C -0.048 4.048 21 C -0.127 4.127 22 C -0.128 4.128 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.040 0.960 28 H 0.258 0.742 29 H 0.317 0.683 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.334 0.666 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.046 0.954 41 H 0.035 0.965 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 8.094 6.793 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.305 5.305 14 C -0.005 4.005 15 H 0.093 0.907 16 C -0.186 4.186 17 C -0.067 4.067 18 N -0.318 5.318 19 C -0.063 4.063 20 C -0.049 4.049 21 C -0.184 4.184 22 C -0.186 4.186 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.116 0.884 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.135 0.865 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.241 7.466 7.191 11.616 hybrid contribution 0.717 0.654 -1.400 1.703 sum -4.524 8.121 5.792 10.952 Atomic orbital electron populations 1.21872 0.99681 0.99577 0.99483 1.21761 0.91155 1.00562 1.02919 1.19142 0.95218 0.89788 0.84604 0.98257 1.21238 0.91405 1.36036 1.04006 0.92056 1.24952 0.97833 0.95863 0.95983 1.69877 1.34503 1.39772 1.09580 0.86601 0.86175 0.78350 0.76862 1.20832 1.21557 1.20072 1.60734 1.35420 1.01788 1.32579 1.21444 0.94288 0.89937 0.94789 0.90678 1.22391 1.00151 0.94596 1.01484 1.21849 0.99764 0.95845 0.89235 1.60288 1.28457 1.15503 1.27503 1.22038 0.88360 0.96936 0.98969 1.20507 0.95987 0.92222 0.96185 1.21700 0.98994 1.00676 0.97020 1.21685 0.94936 1.03282 0.98709 0.94612 0.94002 0.94546 0.88416 0.94159 0.93223 0.86546 0.91913 0.91524 0.95439 0.91629 0.84917 0.95520 0.91411 0.92494 0.94303 0.92298 0.93493 0.94566 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 37.16 0.36 -2.52 16 2 C -0.13 -2.93 5.37 -26.73 -0.14 -3.08 16 3 C 0.22 5.33 1.85 -68.87 -0.13 5.20 16 4 H 0.00 0.00 7.26 -51.93 -0.38 -0.38 16 5 C -0.49 -13.22 8.47 -34.44 -0.29 -13.51 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.46 11.29 55.43 0.63 -24.83 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -13.76 4.82 -100.82 -0.49 -14.25 16 14 C 0.11 1.96 1.45 -67.59 -0.10 1.86 16 15 H 0.08 1.63 7.60 -51.93 -0.39 1.24 16 16 C -0.15 -2.41 4.99 -26.65 -0.13 -2.54 16 17 C 0.06 0.89 6.55 -3.83 -0.03 0.86 16 18 N -0.69 -8.95 6.13 -113.82 -0.70 -9.65 16 19 C 0.07 0.93 5.27 -3.84 -0.02 0.91 16 20 C -0.05 -0.76 0.59 -154.43 -0.09 -0.85 16 21 C -0.13 -1.89 7.73 37.16 0.29 -1.60 16 22 C -0.13 -2.12 8.35 37.16 0.31 -1.81 16 23 H 0.03 0.62 6.67 -51.93 -0.35 0.28 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.10 2.59 5.94 -51.93 -0.31 2.28 16 27 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.32 6.08 5.62 -39.29 -0.22 5.86 16 30 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 31 H 0.07 1.07 6.54 -51.93 -0.34 0.73 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.33 3.59 8.90 -39.29 -0.35 3.24 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.89 7.21 -51.93 -0.37 0.52 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.88 6.01 -51.93 -0.31 0.57 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.43 7.68 -51.93 -0.40 1.03 16 LS Contribution 313.18 15.07 4.72 4.72 Total: -1.00 -27.26 313.18 -8.52 -35.78 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -7.59 Total: 7.39 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -0.07 Total: -15.69 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.56 Total: -48.73 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.26 -8.52 -35.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300888668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.483 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds