Wall clock time and date at job start Mon Mar 30 2020 03:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47206 * 2 1 4 4 H 1.09006 * 109.46915 * 305.64237 * 3 2 1 5 5 C 1.50699 * 109.46871 * 185.64732 * 3 2 1 6 6 H 1.08003 * 119.99240 * 239.99682 * 5 3 2 7 7 C 1.37875 * 120.00497 * 59.99635 * 5 3 2 8 8 N 1.31513 * 119.99720 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00025 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47284 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.47131 * 209.99837 * 9 7 5 12 12 H 1.48498 * 109.47418 * 329.99783 * 9 7 5 13 13 N 1.46893 * 109.47056 * 65.64322 * 3 2 1 14 14 C 1.46905 * 110.99613 * 204.42159 * 13 3 2 15 15 H 1.08997 * 109.52513 * 326.43485 * 14 13 3 16 16 C 1.53119 * 109.52177 * 86.56374 * 14 13 3 17 17 C 1.53033 * 109.28137 * 177.62207 * 16 14 13 18 18 N 1.46850 * 109.52204 * 300.81768 * 17 16 14 19 19 C 1.46851 * 111.19614 * 61.74105 * 18 17 16 20 20 C 1.53030 * 109.52412 * 298.25916 * 19 18 17 21 21 C 1.53002 * 109.50542 * 299.23706 * 20 19 18 22 22 C 1.53005 * 109.50690 * 179.12078 * 20 19 18 23 23 H 1.09000 * 109.46954 * 293.73369 * 1 2 3 24 24 H 1.09000 * 109.46857 * 53.73084 * 1 2 3 25 25 H 1.09000 * 109.47367 * 173.73359 * 1 2 3 26 26 H 1.09004 * 109.47080 * 239.99611 * 2 1 3 27 27 H 1.09003 * 109.46754 * 120.00049 * 2 1 3 28 28 H 0.97005 * 119.99693 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00383 * 328.37297 * 13 3 2 30 30 H 1.09002 * 109.50335 * 297.56363 * 16 14 13 31 31 H 1.09004 * 109.50633 * 57.63891 * 16 14 13 32 32 H 1.08999 * 109.46257 * 60.83347 * 17 16 14 33 33 H 1.09001 * 109.46577 * 180.81568 * 17 16 14 34 34 H 1.00898 * 111.00048 * 185.83667 * 18 17 16 35 35 H 1.09001 * 109.46152 * 58.27533 * 19 18 17 36 36 H 1.09002 * 109.46444 * 178.25134 * 19 18 17 37 37 H 1.09000 * 109.47830 * 179.80013 * 21 20 19 38 38 H 1.09000 * 109.47009 * 299.80975 * 21 20 19 39 39 H 1.09005 * 109.46942 * 59.80243 * 21 20 19 40 40 H 1.08996 * 109.46859 * 300.20052 * 22 20 19 41 41 H 1.09004 * 109.46513 * 60.19310 * 22 20 19 42 42 H 1.08999 * 109.47329 * 180.19093 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8352 5 6 3.5405 1.4447 -0.1398 6 1 4.1540 1.8864 0.6316 7 6 4.1302 0.8829 -1.2523 8 7 3.3830 0.3455 -2.1918 9 14 5.9901 0.8851 -1.4252 10 1 6.5455 -0.3493 -0.8143 11 1 6.3535 0.9318 -2.8643 12 1 6.5501 2.0744 -0.7344 13 7 1.6648 2.0945 1.2617 14 6 1.5976 3.5532 1.1007 15 1 2.3486 3.8750 0.3793 16 6 0.2054 3.9493 0.6013 17 6 0.1223 5.4734 0.4923 18 7 0.3794 6.0742 1.8073 19 6 1.7285 5.7467 2.2861 20 6 1.8595 4.2307 2.4487 21 6 0.8383 3.7369 3.4755 22 6 3.2720 3.8882 2.9265 23 1 -0.3633 0.4136 0.9408 24 1 -0.3633 0.6080 -0.8286 25 1 -0.3634 -1.0215 -0.1122 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7979 -0.0494 -2.9747 29 1 0.7921 1.7289 1.6121 30 1 0.0298 3.5043 -0.3781 31 1 -0.5483 3.5925 1.3034 32 1 0.8669 5.8276 -0.2207 33 1 -0.8725 5.7595 0.1507 34 1 0.2370 7.0728 1.7827 35 1 2.4655 6.0996 1.5648 36 1 1.9003 6.2311 3.2474 37 1 0.9295 2.6566 3.5883 38 1 1.0252 4.2195 4.4348 39 1 -0.1675 3.9829 3.1349 40 1 3.9987 4.2420 2.1952 41 1 3.4579 4.3708 3.8861 42 1 3.3657 2.8081 3.0389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300888668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:08 Heat of formation + Delta-G solvation = -33.973143 kcal Electronic energy + Delta-G solvation = -18993.488039 eV Core-core repulsion = 16392.626689 eV Total energy + Delta-G solvation = -2600.861350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68688 -37.52072 -34.91055 -34.11892 -32.91765 -30.52673 -28.32820 -27.90830 -26.84199 -24.92382 -23.41504 -22.46559 -21.41351 -19.19160 -18.27902 -17.36050 -16.79848 -16.08319 -15.81580 -15.58817 -15.35140 -14.73363 -14.60422 -14.36008 -14.00804 -13.79113 -13.43892 -13.09431 -12.82774 -12.76327 -12.67458 -12.63299 -12.48670 -12.29814 -12.10893 -11.92640 -11.73297 -11.51635 -11.46971 -11.32301 -10.91064 -10.78509 -10.40897 -9.35026 -8.81231 -8.04490 -6.15419 1.38586 1.39757 1.49326 2.43449 3.20066 3.32918 3.66526 3.86751 4.00020 4.21222 4.30185 4.44523 4.50923 4.57309 4.60129 4.62771 4.71502 4.77354 4.79120 4.90554 4.99947 5.02733 5.06357 5.15454 5.17835 5.26256 5.30283 5.36119 5.41226 5.49689 5.65546 5.66307 5.71697 5.79995 5.94585 6.08682 6.41697 6.57957 6.62046 7.00248 7.10320 7.53465 8.98094 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023004 B = 0.008304 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.874282 B = 3370.958251 C = 3846.517392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.230 3.770 4 H -0.035 1.035 5 C -0.502 4.502 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.672 5.672 14 C 0.108 3.892 15 H 0.032 0.968 16 C -0.140 4.140 17 C 0.068 3.932 18 N -0.680 5.680 19 C 0.070 3.930 20 C -0.046 4.046 21 C -0.118 4.118 22 C -0.124 4.124 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.258 0.742 29 H 0.326 0.674 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.016 0.984 33 H 0.088 0.912 34 H 0.353 0.647 35 H 0.016 0.984 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 9.234 8.392 14.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.122 3.878 4 H -0.018 1.018 5 C -0.541 4.541 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.302 5.302 14 C -0.003 4.003 15 H 0.051 0.949 16 C -0.180 4.180 17 C -0.063 4.063 18 N -0.312 5.312 19 C -0.059 4.059 20 C -0.048 4.048 21 C -0.175 4.175 22 C -0.182 4.182 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.144 0.856 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.034 0.966 33 H 0.107 0.893 34 H 0.172 0.828 35 H 0.034 0.966 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.073 8.628 8.805 13.743 hybrid contribution 0.975 0.319 -1.887 2.148 sum -5.098 8.948 6.918 12.406 Atomic orbital electron populations 1.21726 0.96362 1.00912 1.00399 1.21590 0.94144 0.99277 1.00982 1.18856 0.93628 0.90311 0.85026 1.01777 1.21489 0.93022 1.35814 1.03793 0.93296 1.25642 1.01826 0.95700 0.95807 1.70007 1.35945 1.40301 1.09877 0.85688 0.81460 0.78390 0.76860 1.20251 1.21128 1.19842 1.60642 1.36054 1.03078 1.30416 1.21415 0.94418 0.88719 0.95722 0.94915 1.22271 0.98761 0.96581 1.00347 1.21779 1.00767 0.93952 0.89761 1.60240 1.27574 1.16926 1.26435 1.21979 0.88693 0.95271 0.99995 1.20495 0.95953 0.93610 0.94692 1.21613 0.98463 1.00073 0.97364 1.21622 0.95082 1.01785 0.99671 0.92398 0.94658 0.92635 0.91660 0.94633 0.93282 0.85562 0.94084 0.90453 0.96590 0.89335 0.82816 0.96604 0.88996 0.93593 0.92411 0.92027 0.95310 0.91743 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.63 71.98 0.69 -4.49 16 2 C -0.12 -5.78 5.37 30.60 0.16 -5.62 16 3 C 0.23 11.56 1.85 44.17 0.08 11.64 16 4 H -0.04 -1.99 7.26 -2.38 -0.02 -2.01 16 5 C -0.50 -28.20 8.47 25.60 0.22 -27.98 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.44 5.29 84.65 0.45 0.89 16 8 N -0.92 -53.76 11.29 21.45 0.24 -53.51 16 9 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 13 N -0.67 -27.83 4.82 -472.90 -2.28 -30.11 16 14 C 0.11 4.03 1.45 44.99 0.07 4.10 16 15 H 0.03 1.49 7.60 -2.39 -0.02 1.47 16 16 C -0.14 -4.53 4.99 30.65 0.15 -4.38 16 17 C 0.07 1.79 6.55 86.32 0.57 2.36 16 18 N -0.68 -15.72 6.13 -514.00 -3.15 -18.87 16 19 C 0.07 1.80 5.27 86.32 0.45 2.26 16 20 C -0.05 -1.42 0.59 -52.13 -0.03 -1.45 16 21 C -0.12 -3.20 7.73 71.98 0.56 -2.65 16 22 C -0.12 -4.02 8.35 71.98 0.60 -3.42 16 23 H 0.06 1.92 6.67 -2.39 -0.02 1.91 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 3.56 5.94 -2.38 -0.01 3.55 16 27 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 29 H 0.33 12.35 5.62 -89.70 -0.50 11.85 16 30 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 31 H 0.08 2.34 6.54 -2.38 -0.02 2.32 16 32 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.35 6.32 8.90 -89.70 -0.80 5.52 16 35 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.34 7.21 -2.39 -0.02 1.33 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.65 6.01 -2.38 -0.01 1.64 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.05 1.94 7.68 -2.39 -0.02 1.92 16 Total: -1.00 -60.34 313.18 0.49 -59.85 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.32 Total: 24.28 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.97 Total: -28.74 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -5.19 Total: -102.49 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -60.34 0.49 -59.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300888668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.877 kcal (2) G-P(sol) polarization free energy of solvation -60.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds