Wall clock time and date at job start Mon Mar 30 2020 03:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47249 * 2 1 4 4 H 1.08998 * 109.47093 * 185.08971 * 3 2 1 5 5 C 1.50703 * 109.47274 * 305.09217 * 3 2 1 6 6 H 1.07997 * 119.99889 * 119.99690 * 5 3 2 7 7 C 1.37872 * 119.99670 * 300.00075 * 5 3 2 8 8 N 1.31514 * 120.00509 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99749 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46988 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47477 * 299.99935 * 9 7 5 12 12 H 1.48501 * 109.47089 * 60.00042 * 9 7 5 13 13 N 1.46903 * 109.47001 * 65.08839 * 3 2 1 14 14 C 1.46903 * 110.99547 * 86.48108 * 13 3 2 15 15 H 1.09000 * 109.52777 * 322.77539 * 14 13 3 16 16 C 1.53126 * 109.52056 * 82.90436 * 14 13 3 17 17 C 1.53039 * 109.27768 * 177.55874 * 16 14 13 18 18 N 1.46854 * 109.52084 * 300.81868 * 17 16 14 19 19 C 1.46849 * 111.19760 * 61.74417 * 18 17 16 20 20 C 1.53038 * 109.52316 * 298.25596 * 19 18 17 21 21 C 1.53003 * 109.50250 * 299.24085 * 20 19 18 22 22 C 1.52996 * 109.50364 * 179.12041 * 20 19 18 23 23 H 1.09001 * 109.47375 * 63.09805 * 1 2 3 24 24 H 1.08997 * 109.47459 * 183.09729 * 1 2 3 25 25 H 1.08998 * 109.47100 * 303.10428 * 1 2 3 26 26 H 1.08994 * 109.47300 * 240.00336 * 2 1 3 27 27 H 1.08997 * 109.47432 * 119.99919 * 2 1 3 28 28 H 0.96993 * 120.00120 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00044 * 322.53034 * 13 3 2 30 30 H 1.08996 * 109.50150 * 297.49720 * 16 14 13 31 31 H 1.09003 * 109.50383 * 57.61702 * 16 14 13 32 32 H 1.08996 * 109.46525 * 60.82888 * 17 16 14 33 33 H 1.08997 * 109.46188 * 180.81933 * 17 16 14 34 34 H 1.00904 * 110.99845 * 185.84250 * 18 17 16 35 35 H 1.08995 * 109.46384 * 58.27364 * 19 18 17 36 36 H 1.08997 * 109.45731 * 178.25416 * 19 18 17 37 37 H 1.09005 * 109.47193 * 179.80655 * 21 20 19 38 38 H 1.09001 * 109.47231 * 299.80249 * 21 20 19 39 39 H 1.08995 * 109.47467 * 59.80486 * 21 20 19 40 40 H 1.08997 * 109.47269 * 300.19719 * 22 20 19 41 41 H 1.09001 * 109.47183 * 60.19841 * 22 20 19 42 42 H 1.09001 * 109.47223 * 180.19458 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4438 -0.0912 5 6 1.4374 2.1885 -1.1626 6 1 0.8280 3.0624 -0.9859 7 6 1.6639 1.7550 -2.4516 8 7 2.4063 0.6910 -2.6668 9 14 0.9163 2.6792 -3.8927 10 1 1.3079 2.0164 -5.1625 11 1 -0.5633 2.6769 -3.7683 12 1 1.4108 4.0795 -3.8928 13 7 1.6532 2.0986 1.2562 14 6 2.6475 1.8490 2.3083 15 1 3.0277 0.8316 2.2163 16 6 3.8041 2.8423 2.1654 17 6 4.8065 2.6173 3.2997 18 7 4.1347 2.8034 4.5923 19 6 3.0505 1.8294 4.7723 20 6 1.9958 2.0308 3.6819 21 6 1.4140 3.4419 3.7884 22 6 0.8772 1.0017 3.8567 23 1 -0.3634 0.4650 -0.9164 24 1 -0.3634 -1.0261 0.0555 25 1 -0.3633 0.5613 0.8608 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5659 0.3864 -3.5737 29 1 0.7340 1.8038 1.5500 30 1 4.2992 2.6888 1.2065 31 1 3.4181 3.8603 2.2174 32 1 5.2023 1.6036 3.2389 33 1 5.6239 3.3326 3.2092 34 1 4.7952 2.7541 5.3535 35 1 3.4546 0.8194 4.7045 36 1 2.5927 1.9725 5.7510 37 1 0.6652 3.5860 3.0094 38 1 0.9501 3.5708 4.7663 39 1 2.2119 4.1742 3.6654 40 1 1.2931 -0.0031 3.7824 41 1 0.4136 1.1316 4.8347 42 1 0.1281 1.1434 3.0778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300888671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:11 Heat of formation + Delta-G solvation = -12.441484 kcal Electronic energy + Delta-G solvation = -18987.994610 eV Core-core repulsion = 16388.066943 eV Total energy + Delta-G solvation = -2599.927667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.47105 -35.96130 -33.73693 -32.23038 -30.98751 -28.86495 -26.86690 -26.24759 -25.72371 -23.38432 -22.24019 -21.25705 -19.12708 -17.90463 -16.35432 -15.98239 -14.96006 -14.80725 -14.44770 -14.07105 -13.80513 -13.31217 -13.13078 -12.97278 -12.39626 -12.22045 -11.82329 -11.72920 -11.71190 -11.32976 -11.15207 -10.90891 -10.83204 -10.64678 -10.50832 -10.49895 -10.10157 -9.91499 -9.75922 -9.57772 -9.36187 -8.88903 -8.28786 -8.27266 -7.09137 -5.92394 -3.93425 3.36979 3.41152 3.44733 4.36470 4.48345 4.98330 5.07804 5.18676 5.37025 5.39201 5.53976 5.61269 5.70574 5.79404 5.84650 5.99155 6.04703 6.14992 6.26070 6.30303 6.33906 6.37161 6.41533 6.49333 6.59958 6.63200 6.70366 6.81832 6.93823 7.04497 7.20083 7.34056 7.37406 7.51829 7.54705 7.76161 7.96476 8.37260 8.66763 8.72493 9.12760 9.70259 11.14632 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.007121 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.295632 B = 3931.350805 C = 4214.136692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.290 1.290 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.677 5.677 14 C 0.100 3.900 15 H 0.026 0.974 16 C -0.105 4.105 17 C 0.058 3.942 18 N -0.686 5.686 19 C 0.072 3.928 20 C -0.063 4.063 21 C -0.121 4.121 22 C -0.145 4.145 23 H 0.064 0.936 24 H 0.021 0.979 25 H 0.029 0.971 26 H 0.091 0.909 27 H 0.008 0.992 28 H 0.258 0.742 29 H 0.327 0.673 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.335 0.665 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.037 0.726 12.967 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.216 1.216 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.010 4.010 15 H 0.044 0.956 16 C -0.143 4.143 17 C -0.071 4.071 18 N -0.316 5.316 19 C -0.058 4.058 20 C -0.064 4.064 21 C -0.179 4.179 22 C -0.203 4.203 23 H 0.083 0.917 24 H 0.040 0.960 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.948 1.722 12.381 12.536 hybrid contribution 0.023 -1.508 -0.504 1.590 sum 0.971 0.214 11.877 11.918 Atomic orbital electron populations 1.21560 0.97788 0.97755 1.01278 1.22095 0.94887 1.01401 1.00005 1.19195 0.95785 0.88344 0.85832 0.95086 1.21054 1.30307 1.11351 0.89700 0.92152 1.24905 0.95633 0.95178 0.98678 1.69872 1.39173 1.24082 1.20673 0.86662 0.79538 0.80025 0.81753 1.21611 1.20454 1.20394 1.60900 1.03592 1.63064 1.03446 1.21393 0.93507 0.95939 0.90193 0.95616 1.21615 0.95176 1.01006 0.96517 1.21982 0.96528 0.98822 0.89804 1.60265 1.14225 1.53025 1.04094 1.21940 0.92599 0.92692 0.98597 1.20702 0.94386 0.96655 0.94655 1.21647 1.00989 0.95384 0.99839 1.21903 0.98533 0.98375 1.01462 0.91662 0.96029 0.95158 0.89069 0.97335 0.93184 0.85235 0.91455 0.90496 0.95830 0.91187 0.84847 0.95793 0.91306 0.92155 0.94534 0.91437 0.93214 0.92916 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.39 37.15 0.35 -2.36 16 2 C -0.14 -3.40 5.50 -26.73 -0.15 -3.54 16 3 C 0.22 5.30 2.14 -68.86 -0.15 5.16 16 4 H 0.03 0.85 6.98 -51.93 -0.36 0.49 16 5 C -0.49 -13.11 7.41 -34.44 -0.26 -13.36 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.54 5.26 -17.82 -0.09 1.45 16 8 N -0.90 -25.44 11.38 55.43 0.63 -24.81 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.68 -14.08 5.24 -100.81 -0.53 -14.61 16 14 C 0.10 1.81 1.52 -67.58 -0.10 1.71 16 15 H 0.03 0.51 7.21 -51.93 -0.37 0.14 16 16 C -0.10 -1.82 5.19 -26.65 -0.14 -1.96 16 17 C 0.06 0.82 6.55 -3.83 -0.03 0.79 16 18 N -0.69 -8.73 6.13 -113.81 -0.70 -9.43 16 19 C 0.07 0.93 5.27 -3.83 -0.02 0.91 16 20 C -0.06 -0.94 0.54 -154.43 -0.08 -1.02 16 21 C -0.12 -1.81 7.85 37.16 0.29 -1.52 16 22 C -0.14 -2.02 8.27 37.16 0.31 -1.71 16 23 H 0.06 1.54 7.16 -51.93 -0.37 1.16 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.59 6.15 -51.93 -0.32 0.27 16 26 H 0.09 2.42 6.22 -51.93 -0.32 2.09 16 27 H 0.01 0.18 7.46 -51.93 -0.39 -0.21 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.33 6.56 3.94 -39.29 -0.15 6.40 16 30 H 0.07 1.30 7.33 -51.93 -0.38 0.92 16 31 H 0.08 1.40 6.58 -51.93 -0.34 1.05 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.33 3.46 8.90 -39.29 -0.35 3.11 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.98 7.41 -51.93 -0.38 0.59 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 1.07 6.01 -51.93 -0.31 0.76 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.94 6.14 -51.93 -0.32 0.62 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -27.40 307.27 -8.36 -35.76 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.31 Total: 7.45 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.07 Total: -15.47 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.60 Total: -48.85 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.40 -8.36 -35.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300888671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.320 kcal (2) G-P(sol) polarization free energy of solvation -27.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds