Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47249 * 2 1 4 4 H 1.08998 * 109.47093 * 185.08971 * 3 2 1 5 5 C 1.50703 * 109.47274 * 305.09217 * 3 2 1 6 6 H 1.07997 * 119.99889 * 119.99690 * 5 3 2 7 7 C 1.37872 * 119.99670 * 300.00075 * 5 3 2 8 8 N 1.31514 * 120.00509 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99749 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46988 * 179.97438 * 9 7 5 11 11 H 1.48491 * 109.47477 * 299.99935 * 9 7 5 12 12 H 1.48501 * 109.47089 * 60.00042 * 9 7 5 13 13 N 1.46903 * 109.47001 * 65.08839 * 3 2 1 14 14 C 1.46903 * 110.99547 * 86.48108 * 13 3 2 15 15 H 1.09000 * 109.52777 * 322.77539 * 14 13 3 16 16 C 1.53126 * 109.52056 * 82.90436 * 14 13 3 17 17 C 1.53039 * 109.27768 * 177.55874 * 16 14 13 18 18 N 1.46854 * 109.52084 * 300.81868 * 17 16 14 19 19 C 1.46849 * 111.19760 * 61.74417 * 18 17 16 20 20 C 1.53038 * 109.52316 * 298.25596 * 19 18 17 21 21 C 1.53003 * 109.50250 * 299.24085 * 20 19 18 22 22 C 1.52996 * 109.50364 * 179.12041 * 20 19 18 23 23 H 1.09001 * 109.47375 * 63.09805 * 1 2 3 24 24 H 1.08997 * 109.47459 * 183.09729 * 1 2 3 25 25 H 1.08998 * 109.47100 * 303.10428 * 1 2 3 26 26 H 1.08994 * 109.47300 * 240.00336 * 2 1 3 27 27 H 1.08997 * 109.47432 * 119.99919 * 2 1 3 28 28 H 0.96993 * 120.00120 * 180.02562 * 8 7 5 29 29 H 1.00901 * 111.00044 * 322.53034 * 13 3 2 30 30 H 1.08996 * 109.50150 * 297.49720 * 16 14 13 31 31 H 1.09003 * 109.50383 * 57.61702 * 16 14 13 32 32 H 1.08996 * 109.46525 * 60.82888 * 17 16 14 33 33 H 1.08997 * 109.46188 * 180.81933 * 17 16 14 34 34 H 1.00904 * 110.99845 * 185.84250 * 18 17 16 35 35 H 1.08995 * 109.46384 * 58.27364 * 19 18 17 36 36 H 1.08997 * 109.45731 * 178.25416 * 19 18 17 37 37 H 1.09005 * 109.47193 * 179.80655 * 21 20 19 38 38 H 1.09001 * 109.47231 * 299.80249 * 21 20 19 39 39 H 1.08995 * 109.47467 * 59.80486 * 21 20 19 40 40 H 1.08997 * 109.47269 * 300.19719 * 22 20 19 41 41 H 1.09001 * 109.47183 * 60.19841 * 22 20 19 42 42 H 1.09001 * 109.47223 * 180.19458 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1262 1.4438 -0.0912 5 6 1.4374 2.1885 -1.1626 6 1 0.8280 3.0624 -0.9859 7 6 1.6639 1.7550 -2.4516 8 7 2.4063 0.6910 -2.6668 9 14 0.9163 2.6792 -3.8927 10 1 1.3079 2.0164 -5.1625 11 1 -0.5633 2.6769 -3.7683 12 1 1.4108 4.0795 -3.8928 13 7 1.6532 2.0986 1.2562 14 6 2.6475 1.8490 2.3083 15 1 3.0277 0.8316 2.2163 16 6 3.8041 2.8423 2.1654 17 6 4.8065 2.6173 3.2997 18 7 4.1347 2.8034 4.5923 19 6 3.0505 1.8294 4.7723 20 6 1.9958 2.0308 3.6819 21 6 1.4140 3.4419 3.7884 22 6 0.8772 1.0017 3.8567 23 1 -0.3634 0.4650 -0.9164 24 1 -0.3634 -1.0261 0.0555 25 1 -0.3633 0.5613 0.8608 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5659 0.3864 -3.5737 29 1 0.7340 1.8038 1.5500 30 1 4.2992 2.6888 1.2065 31 1 3.4181 3.8603 2.2174 32 1 5.2023 1.6036 3.2389 33 1 5.6239 3.3326 3.2092 34 1 4.7952 2.7541 5.3535 35 1 3.4546 0.8194 4.7045 36 1 2.5927 1.9725 5.7510 37 1 0.6652 3.5860 3.0094 38 1 0.9501 3.5708 4.7663 39 1 2.2119 4.1742 3.6654 40 1 1.2931 -0.0031 3.7824 41 1 0.4136 1.1316 4.8347 42 1 0.1281 1.1434 3.0778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300888671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -30.369163 kcal Electronic energy + Delta-G solvation = -18988.772012 eV Core-core repulsion = 16388.066943 eV Total energy + Delta-G solvation = -2600.705069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.78811 -37.67865 -35.07726 -33.95529 -32.70046 -30.41937 -28.21138 -27.91583 -27.02904 -25.30077 -23.65849 -22.51612 -20.99653 -19.27249 -18.06500 -17.37627 -16.81875 -16.43338 -15.73385 -15.59798 -15.04747 -14.96011 -14.53181 -14.44846 -14.11878 -13.82540 -13.57690 -12.97955 -12.84951 -12.79316 -12.70584 -12.59158 -12.45077 -12.35992 -12.09311 -11.92055 -11.83448 -11.49813 -11.45800 -11.21361 -10.90062 -10.81132 -10.40566 -9.32480 -8.83578 -8.03753 -6.11884 1.43193 1.44127 1.51485 2.46242 3.24713 3.32778 3.64217 3.78751 3.94151 4.11594 4.34875 4.39470 4.50262 4.54028 4.56779 4.59108 4.69642 4.73405 4.83667 4.85093 4.92360 5.01787 5.06206 5.08816 5.15723 5.22554 5.28603 5.43038 5.44271 5.47550 5.50335 5.67903 5.73302 5.75001 5.90409 6.08500 6.36447 6.61461 6.76280 6.94657 7.04644 7.56284 9.01453 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.007121 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.295632 B = 3931.350805 C = 4214.136692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 C 0.225 3.775 4 H -0.008 1.008 5 C -0.497 4.497 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.287 1.287 11 H -0.271 1.271 12 H -0.277 1.277 13 N -0.678 5.678 14 C 0.100 3.900 15 H 0.005 0.995 16 C -0.102 4.102 17 C 0.067 3.933 18 N -0.684 5.684 19 C 0.074 3.926 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.142 4.142 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.019 0.981 28 H 0.258 0.742 29 H 0.332 0.668 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.021 0.979 33 H 0.086 0.914 34 H 0.354 0.646 35 H 0.023 0.977 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 1.061 14.930 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.117 3.883 4 H 0.010 0.990 5 C -0.536 4.536 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.213 1.213 11 H -0.196 1.196 12 H -0.202 1.202 13 N -0.310 5.310 14 C -0.010 4.010 15 H 0.023 0.977 16 C -0.141 4.141 17 C -0.063 4.063 18 N -0.316 5.316 19 C -0.056 4.056 20 C -0.061 4.061 21 C -0.172 4.172 22 C -0.200 4.200 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.153 0.847 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.173 0.827 35 H 0.041 0.959 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.099 0.901 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.197 2.062 14.371 14.520 hybrid contribution 0.290 -1.599 -1.084 1.953 sum 0.487 0.463 13.287 13.304 Atomic orbital electron populations 1.21435 0.95868 0.99258 1.00821 1.21929 0.96495 1.00292 0.98885 1.18895 0.93214 0.89137 0.87102 0.98972 1.21277 1.30181 1.11222 0.90899 0.93074 1.25585 0.96012 0.95897 1.01005 1.70009 1.40112 1.25212 1.20985 0.85746 0.79080 0.78747 0.78845 1.21318 1.19630 1.20239 1.60796 1.04555 1.62553 1.03133 1.21465 0.93228 0.94832 0.91489 0.97691 1.21543 0.95681 1.00254 0.96609 1.21828 0.95829 0.99203 0.89412 1.60194 1.14643 1.52897 1.03904 1.21939 0.92108 0.92703 0.98822 1.20699 0.95278 0.97138 0.93007 1.21565 1.00177 0.94891 1.00529 1.21879 0.97803 0.97754 1.02577 0.94045 0.93791 0.93315 0.92239 0.96271 0.93322 0.84667 0.94721 0.91386 0.96033 0.89581 0.82677 0.95859 0.88678 0.93935 0.92142 0.92548 0.93487 0.90138 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.39 71.98 0.68 -4.26 16 2 C -0.14 -6.53 5.50 30.59 0.17 -6.36 16 3 C 0.23 11.43 2.14 44.17 0.09 11.52 16 4 H -0.01 -0.44 6.98 -2.39 -0.02 -0.46 16 5 C -0.50 -27.51 7.41 25.60 0.19 -27.32 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.71 5.26 84.65 0.45 1.16 16 8 N -0.92 -53.66 11.38 21.45 0.24 -53.41 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.68 -28.65 5.24 -472.86 -2.48 -31.13 16 14 C 0.10 3.63 1.52 45.00 0.07 3.70 16 15 H 0.01 0.21 7.21 -2.39 -0.02 0.19 16 16 C -0.10 -3.63 5.19 30.65 0.16 -3.47 16 17 C 0.07 1.82 6.55 86.33 0.57 2.38 16 18 N -0.68 -15.59 6.13 -514.00 -3.15 -18.74 16 19 C 0.07 1.70 5.27 86.33 0.45 2.16 16 20 C -0.06 -1.69 0.54 -52.13 -0.03 -1.71 16 21 C -0.11 -3.18 7.85 71.98 0.57 -2.62 16 22 C -0.14 -3.62 8.27 71.98 0.60 -3.02 16 23 H 0.04 1.94 7.16 -2.39 -0.02 1.92 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.85 6.15 -2.39 -0.01 1.84 16 26 H 0.06 3.25 6.22 -2.39 -0.01 3.23 16 27 H 0.02 0.84 7.46 -2.39 -0.02 0.83 16 28 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.33 13.26 3.94 -89.69 -0.35 12.91 16 30 H 0.03 1.42 7.33 -2.39 -0.02 1.40 16 31 H 0.07 2.51 6.58 -2.39 -0.02 2.49 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.58 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.35 6.09 8.90 -89.69 -0.80 5.30 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.04 1.32 7.41 -2.38 -0.02 1.30 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.69 6.01 -2.39 -0.01 1.68 16 40 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.40 6.14 -2.39 -0.01 1.38 16 Total: -1.00 -60.15 307.27 0.44 -59.71 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.16 Total: 24.83 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.95 Total: -27.84 kcal Atomic # 7 Polarization: -97.89 SS G_CDS: -5.39 Total: -103.28 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.15 0.44 -59.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300888671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.339 kcal (2) G-P(sol) polarization free energy of solvation -60.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds