Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 H 1.09004 * 109.46925 * 54.69466 * 3 2 1 5 5 C 1.50695 * 109.47405 * 294.69157 * 3 2 1 6 6 H 1.07993 * 120.00197 * 275.30905 * 5 3 2 7 7 C 1.37885 * 119.99825 * 95.30478 * 5 3 2 8 8 N 1.31514 * 120.00041 * 359.07544 * 7 5 3 9 9 Si 1.86803 * 119.99767 * 179.07001 * 7 5 3 10 10 H 1.48502 * 109.46609 * 60.00399 * 9 7 5 11 11 H 1.48499 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47401 * 300.00459 * 9 7 5 13 13 N 1.46904 * 109.47154 * 174.68811 * 3 2 1 14 14 C 1.46847 * 110.99473 * 58.62942 * 13 3 2 15 15 C 1.53039 * 109.52210 * 174.15854 * 14 13 3 16 16 C 1.53129 * 109.27651 * 59.17629 * 15 14 13 17 17 H 1.08995 * 109.52223 * 62.25170 * 16 15 14 18 18 N 1.46900 * 109.51869 * 182.44008 * 16 15 14 19 19 C 1.53110 * 109.15992 * 302.34578 * 16 15 14 20 20 C 1.52998 * 109.50304 * 177.59521 * 19 16 15 21 21 C 1.53001 * 109.50829 * 297.67169 * 19 16 15 22 22 C 1.46838 * 111.00108 * 294.41931 * 13 3 2 23 23 H 1.09000 * 109.47164 * 63.56144 * 1 2 3 24 24 H 1.09001 * 109.46948 * 183.56380 * 1 2 3 25 25 H 1.09004 * 109.47063 * 303.56253 * 1 2 3 26 26 H 1.08998 * 109.47232 * 119.99993 * 2 1 3 27 27 H 1.09001 * 109.47165 * 240.00736 * 2 1 3 28 28 H 0.96993 * 119.99504 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46320 * 294.17123 * 14 13 3 30 30 H 1.08994 * 109.46800 * 54.14470 * 14 13 3 31 31 H 1.08996 * 109.50670 * 179.11897 * 15 14 13 32 32 H 1.08994 * 109.50505 * 299.24034 * 15 14 13 33 33 H 1.00896 * 111.00398 * 300.00092 * 18 16 15 34 34 H 1.00901 * 111.00045 * 63.95698 * 18 16 15 35 35 H 1.09003 * 109.47395 * 60.00326 * 20 19 16 36 36 H 1.09005 * 109.47182 * 179.97438 * 20 19 16 37 37 H 1.09001 * 109.47542 * 299.99908 * 20 19 16 38 38 H 1.09003 * 109.46886 * 60.00148 * 21 19 16 39 39 H 1.09002 * 109.47619 * 179.97438 * 21 19 16 40 40 H 1.08991 * 109.47047 * 300.00606 * 21 19 16 41 41 H 1.09007 * 109.46424 * 305.85016 * 22 13 3 42 42 H 1.08997 * 109.46689 * 65.82526 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6011 1.9830 0.8387 5 6 1.6479 2.1140 -1.2908 6 1 2.2665 1.9997 -2.1686 7 6 0.4992 2.8743 -1.3512 8 7 -0.2638 2.9986 -0.2873 9 14 0.0268 3.7279 -2.9443 10 1 -0.1575 2.7138 -4.0133 11 1 -1.2411 4.4756 -2.7481 12 1 1.1032 4.6721 -3.3380 13 7 3.5034 1.4445 0.1282 14 6 4.1288 0.6958 -0.9694 15 6 5.6500 0.8408 -0.8858 16 6 6.1355 0.3052 0.4641 17 1 5.8992 -0.7560 0.5412 18 7 7.5880 0.4953 0.5738 19 6 5.4329 1.0690 1.5898 20 6 5.8673 0.4997 2.9419 21 6 5.8092 2.5501 1.5147 22 6 3.9180 0.9173 1.4345 23 1 -0.3633 0.4576 -0.9202 24 1 -0.3633 -1.0257 0.0639 25 1 -0.3633 0.5682 0.8564 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 -1.0717 3.5337 -0.3298 29 1 3.8595 -0.3574 -0.8902 30 1 3.7783 1.0893 -1.9235 31 1 6.1146 0.2722 -1.6914 32 1 5.9209 1.8925 -0.9788 33 1 8.0736 0.0046 -0.1620 34 1 7.8255 1.4760 0.5724 35 1 6.9468 0.6048 3.0506 36 1 5.3672 1.0441 3.7429 37 1 5.5977 -0.5551 2.9955 38 1 5.4982 2.9556 0.5519 39 1 5.3084 3.0934 2.3161 40 1 6.8885 2.6566 1.6222 41 1 3.4144 1.4719 2.2264 42 1 3.6497 -0.1369 1.5024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308810185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = -11.817029 kcal Electronic energy + Delta-G solvation = -19043.025091 eV Core-core repulsion = 16443.124502 eV Total energy + Delta-G solvation = -2599.900588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51828 -36.06087 -32.87637 -32.60415 -31.06678 -29.07585 -26.88507 -26.77427 -25.07492 -23.26641 -22.13630 -21.44025 -19.18755 -17.87865 -16.23445 -15.83207 -15.32883 -14.45187 -14.14145 -14.00771 -13.81489 -13.26751 -13.19682 -13.00877 -12.49095 -12.20154 -11.75936 -11.65574 -11.52639 -11.20683 -11.03137 -10.91116 -10.79584 -10.67403 -10.50982 -10.30962 -10.19465 -10.12922 -9.78538 -9.63168 -9.26202 -8.84515 -8.43644 -8.34641 -6.99748 -5.99876 -4.01403 3.32139 3.37190 3.39929 4.42809 4.76493 4.90226 5.03299 5.24912 5.37167 5.45483 5.64313 5.72853 5.85054 5.98605 6.08002 6.09976 6.14941 6.28105 6.29517 6.32332 6.34790 6.42936 6.51588 6.61785 6.64921 6.66174 6.72518 6.79324 6.93454 7.00113 7.25621 7.30216 7.34190 7.58213 7.61395 7.68907 7.86204 8.12952 8.45933 8.67390 9.05233 9.61183 11.08472 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030279 B = 0.007406 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.508942 B = 3779.740901 C = 4054.015028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C 0.204 3.796 4 H 0.069 0.931 5 C -0.496 4.496 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.888 5.888 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.524 5.524 14 C 0.064 3.936 15 C -0.151 4.151 16 C 0.102 3.898 17 H 0.070 0.930 18 N -0.845 5.845 19 C -0.052 4.052 20 C -0.131 4.131 21 C -0.133 4.133 22 C 0.063 3.937 23 H 0.063 0.937 24 H 0.010 0.990 25 H 0.052 0.948 26 H 0.021 0.979 27 H 0.038 0.962 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.333 0.667 34 H 0.338 0.662 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.372 -4.182 2.171 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C 0.098 3.902 4 H 0.087 0.913 5 C -0.534 4.534 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.203 1.203 13 N -0.247 5.247 14 C -0.065 4.065 15 C -0.191 4.191 16 C -0.010 4.010 17 H 0.088 0.912 18 N -0.373 5.373 19 C -0.053 4.053 20 C -0.189 4.189 21 C -0.190 4.190 22 C -0.066 4.066 23 H 0.082 0.918 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 10.296 -3.954 2.927 11.412 hybrid contribution -0.776 0.021 -1.813 1.972 sum 9.520 -3.934 1.114 10.361 Atomic orbital electron populations 1.21402 0.95736 0.96778 1.03507 1.22222 0.97034 1.01182 0.97415 1.19577 0.80587 0.90732 0.99275 0.91348 1.20944 1.06963 1.30034 0.95489 0.92674 1.24885 0.96610 0.95890 0.96075 1.69929 1.14340 1.40230 1.28137 0.86719 0.77693 0.79814 0.84083 1.20473 1.21396 1.20328 1.62449 1.11352 1.51585 0.99292 1.21874 0.91885 0.95427 0.97352 1.22500 0.97912 1.01527 0.97164 1.21470 0.86760 0.98987 0.93768 0.91191 1.59033 1.07364 1.17145 1.53789 1.20549 0.94954 0.95698 0.94106 1.21733 1.01470 0.99814 0.95864 1.21773 0.99049 0.94977 1.03214 1.22098 0.93276 0.97255 0.94008 0.91797 0.97066 0.92866 0.96055 0.94358 0.92984 0.96278 0.90194 0.93068 0.91303 0.85533 0.84816 0.91907 0.93461 0.93606 0.90976 0.93153 0.93914 0.91508 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.74 37.16 0.32 -2.32 16 2 C -0.14 -3.11 4.64 -26.73 -0.12 -3.24 16 3 C 0.20 4.93 1.96 -68.86 -0.13 4.79 16 4 H 0.07 1.88 7.23 -51.93 -0.38 1.50 16 5 C -0.50 -13.04 7.54 -34.44 -0.26 -13.30 16 6 H 0.06 1.46 6.04 -52.49 -0.32 1.14 16 7 C 0.07 1.81 4.49 -17.82 -0.08 1.73 16 8 N -0.89 -24.56 11.59 55.43 0.64 -23.92 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.52 -10.90 3.91 -228.08 -0.89 -11.79 16 14 C 0.06 1.21 4.67 -3.83 -0.02 1.19 16 15 C -0.15 -2.32 5.31 -26.64 -0.14 -2.46 16 16 C 0.10 1.44 2.50 -67.59 -0.17 1.27 16 17 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 18 N -0.84 -10.03 8.57 -4.56 -0.04 -10.07 16 19 C -0.05 -0.79 0.59 -154.43 -0.09 -0.88 16 20 C -0.13 -1.80 8.35 37.16 0.31 -1.49 16 21 C -0.13 -1.99 7.65 37.16 0.28 -1.71 16 22 C 0.06 1.15 3.77 -3.84 -0.01 1.14 16 23 H 0.06 1.59 6.64 -51.93 -0.34 1.24 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.05 1.27 7.99 -51.93 -0.42 0.85 16 26 H 0.02 0.45 6.43 -51.93 -0.33 0.11 16 27 H 0.04 0.85 6.82 -51.93 -0.35 0.50 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.02 0.37 6.73 -51.93 -0.35 0.02 16 30 H 0.08 1.66 6.03 -51.93 -0.31 1.35 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.09 6.58 -51.93 -0.34 0.75 16 33 H 0.33 3.44 9.04 -39.29 -0.36 3.08 16 34 H 0.34 3.85 6.94 -39.29 -0.27 3.57 16 35 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.22 6.01 -51.93 -0.31 0.91 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.55 6.54 -51.93 -0.34 0.21 16 41 H 0.07 1.28 8.07 -51.92 -0.42 0.86 16 42 H 0.02 0.41 6.63 -51.93 -0.34 0.07 16 LS Contribution 303.71 15.07 4.58 4.58 Total: -1.00 -26.42 303.71 -8.11 -34.52 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.26 Total: 5.95 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.11 Total: -15.28 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.29 Total: -45.78 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.42 -8.11 -34.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308810185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.707 kcal (2) G-P(sol) polarization free energy of solvation -26.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds