Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 H 1.09004 * 109.46925 * 54.69466 * 3 2 1 5 5 C 1.50695 * 109.47405 * 294.69157 * 3 2 1 6 6 H 1.07993 * 120.00197 * 275.30905 * 5 3 2 7 7 C 1.37885 * 119.99825 * 95.30478 * 5 3 2 8 8 N 1.31514 * 120.00041 * 359.07544 * 7 5 3 9 9 Si 1.86803 * 119.99767 * 179.07001 * 7 5 3 10 10 H 1.48502 * 109.46609 * 60.00399 * 9 7 5 11 11 H 1.48499 * 109.47007 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47401 * 300.00459 * 9 7 5 13 13 N 1.46904 * 109.47154 * 174.68811 * 3 2 1 14 14 C 1.46847 * 110.99473 * 58.62942 * 13 3 2 15 15 C 1.53039 * 109.52210 * 174.15854 * 14 13 3 16 16 C 1.53129 * 109.27651 * 59.17629 * 15 14 13 17 17 H 1.08995 * 109.52223 * 62.25170 * 16 15 14 18 18 N 1.46900 * 109.51869 * 182.44008 * 16 15 14 19 19 C 1.53110 * 109.15992 * 302.34578 * 16 15 14 20 20 C 1.52998 * 109.50304 * 177.59521 * 19 16 15 21 21 C 1.53001 * 109.50829 * 297.67169 * 19 16 15 22 22 C 1.46838 * 111.00108 * 294.41931 * 13 3 2 23 23 H 1.09000 * 109.47164 * 63.56144 * 1 2 3 24 24 H 1.09001 * 109.46948 * 183.56380 * 1 2 3 25 25 H 1.09004 * 109.47063 * 303.56253 * 1 2 3 26 26 H 1.08998 * 109.47232 * 119.99993 * 2 1 3 27 27 H 1.09001 * 109.47165 * 240.00736 * 2 1 3 28 28 H 0.96993 * 119.99504 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46320 * 294.17123 * 14 13 3 30 30 H 1.08994 * 109.46800 * 54.14470 * 14 13 3 31 31 H 1.08996 * 109.50670 * 179.11897 * 15 14 13 32 32 H 1.08994 * 109.50505 * 299.24034 * 15 14 13 33 33 H 1.00896 * 111.00398 * 300.00092 * 18 16 15 34 34 H 1.00901 * 111.00045 * 63.95698 * 18 16 15 35 35 H 1.09003 * 109.47395 * 60.00326 * 20 19 16 36 36 H 1.09005 * 109.47182 * 179.97438 * 20 19 16 37 37 H 1.09001 * 109.47542 * 299.99908 * 20 19 16 38 38 H 1.09003 * 109.46886 * 60.00148 * 21 19 16 39 39 H 1.09002 * 109.47619 * 179.97438 * 21 19 16 40 40 H 1.08991 * 109.47047 * 300.00606 * 21 19 16 41 41 H 1.09007 * 109.46424 * 305.85016 * 22 13 3 42 42 H 1.08997 * 109.46689 * 65.82526 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6011 1.9830 0.8387 5 6 1.6479 2.1140 -1.2908 6 1 2.2665 1.9997 -2.1686 7 6 0.4992 2.8743 -1.3512 8 7 -0.2638 2.9986 -0.2873 9 14 0.0268 3.7279 -2.9443 10 1 -0.1575 2.7138 -4.0133 11 1 -1.2411 4.4756 -2.7481 12 1 1.1032 4.6721 -3.3380 13 7 3.5034 1.4445 0.1282 14 6 4.1288 0.6958 -0.9694 15 6 5.6500 0.8408 -0.8858 16 6 6.1355 0.3052 0.4641 17 1 5.8992 -0.7560 0.5412 18 7 7.5880 0.4953 0.5738 19 6 5.4329 1.0690 1.5898 20 6 5.8673 0.4997 2.9419 21 6 5.8092 2.5501 1.5147 22 6 3.9180 0.9173 1.4345 23 1 -0.3633 0.4576 -0.9202 24 1 -0.3633 -1.0257 0.0639 25 1 -0.3633 0.5682 0.8564 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5137 -0.8901 28 1 -1.0717 3.5337 -0.3298 29 1 3.8595 -0.3574 -0.8902 30 1 3.7783 1.0893 -1.9235 31 1 6.1146 0.2722 -1.6914 32 1 5.9209 1.8925 -0.9788 33 1 8.0736 0.0046 -0.1620 34 1 7.8255 1.4760 0.5724 35 1 6.9468 0.6048 3.0506 36 1 5.3672 1.0441 3.7429 37 1 5.5977 -0.5551 2.9955 38 1 5.4982 2.9556 0.5519 39 1 5.3084 3.0934 2.3161 40 1 6.8885 2.6566 1.6222 41 1 3.4144 1.4719 2.2264 42 1 3.6497 -0.1369 1.5024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308810185.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = -28.812128 kcal Electronic energy + Delta-G solvation = -19043.762054 eV Core-core repulsion = 16443.124502 eV Total energy + Delta-G solvation = -2600.637551 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91438 -37.67978 -34.57934 -33.90965 -32.90115 -30.48302 -28.56534 -28.05512 -26.57800 -25.05413 -23.62731 -22.93407 -20.95018 -19.16717 -18.20667 -16.99140 -16.95147 -16.10729 -15.68856 -15.51790 -15.33421 -14.78619 -14.70791 -14.33787 -14.10612 -13.68541 -13.45006 -12.97414 -12.90374 -12.74771 -12.71094 -12.52737 -12.46033 -12.23749 -12.12667 -12.05070 -11.80885 -11.56781 -11.32722 -11.17852 -10.88808 -10.79070 -10.47426 -9.43513 -8.67308 -8.05402 -6.12193 1.42302 1.43594 1.50084 2.45324 3.15173 3.53584 3.71834 3.79667 4.01574 4.15446 4.32521 4.38399 4.48857 4.53576 4.59123 4.68559 4.76162 4.81536 4.86810 4.92192 4.96659 5.00025 5.12186 5.14655 5.16005 5.25754 5.29533 5.33603 5.42275 5.48803 5.53611 5.68613 5.70889 5.78573 5.82008 6.20723 6.32150 6.67668 6.73305 6.87241 6.99825 7.53044 9.01983 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030279 B = 0.007406 C = 0.006905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.508942 B = 3779.740901 C = 4054.015028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C 0.210 3.790 4 H 0.029 0.971 5 C -0.506 4.506 6 H 0.051 0.949 7 C 0.024 3.976 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.534 5.534 14 C 0.066 3.934 15 C -0.142 4.142 16 C 0.112 3.888 17 H 0.067 0.933 18 N -0.836 5.836 19 C -0.049 4.049 20 C -0.124 4.124 21 C -0.127 4.127 22 C 0.065 3.935 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.259 0.741 29 H 0.017 0.983 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.346 0.654 34 H 0.344 0.656 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 -4.966 1.898 13.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.170 4.170 3 C 0.103 3.897 4 H 0.047 0.953 5 C -0.544 4.544 6 H 0.069 0.931 7 C -0.175 4.175 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.257 5.257 14 C -0.063 4.063 15 C -0.182 4.182 16 C 0.000 4.000 17 H 0.085 0.915 18 N -0.366 5.366 19 C -0.050 4.050 20 C -0.182 4.182 21 C -0.184 4.184 22 C -0.063 4.063 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.228 -4.747 2.646 13.382 hybrid contribution -1.342 0.249 -1.705 2.184 sum 10.886 -4.498 0.941 11.817 Atomic orbital electron populations 1.21271 0.95923 0.97926 1.01293 1.22082 0.96742 1.00200 0.97978 1.19297 0.82683 0.91000 0.96731 0.95333 1.21198 1.06878 1.30146 0.96195 0.93127 1.25520 0.96706 0.96672 0.98647 1.70055 1.14600 1.40939 1.29681 0.85838 0.77254 0.78853 0.80979 1.19900 1.21243 1.20199 1.62295 1.09463 1.52862 1.01064 1.21851 0.94367 0.94613 0.95445 1.22448 0.94976 1.01825 0.98910 1.21272 0.88128 0.98327 0.92300 0.91513 1.58968 1.05534 1.17768 1.54373 1.20522 0.92521 0.96241 0.95731 1.21670 1.02112 0.99762 0.94655 1.21707 1.00579 0.94524 1.01633 1.22114 0.95688 0.96444 0.92103 0.94246 0.94159 0.94720 0.94780 0.94158 0.93239 0.96523 0.92515 0.90878 0.91711 0.84037 0.84194 0.90718 0.93369 0.93425 0.93131 0.93987 0.91331 0.93189 0.96295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.87 8.74 71.98 0.63 -4.24 16 2 C -0.13 -5.87 4.64 30.60 0.14 -5.73 16 3 C 0.21 10.38 1.96 44.17 0.09 10.47 16 4 H 0.03 1.64 7.23 -2.38 -0.02 1.62 16 5 C -0.51 -27.15 7.54 25.60 0.19 -26.96 16 6 H 0.05 2.72 6.04 -2.91 -0.02 2.70 16 7 C 0.02 1.31 4.49 84.66 0.38 1.69 16 8 N -0.91 -51.89 11.59 21.45 0.25 -51.65 16 9 Si 0.94 43.61 29.54 68.60 2.03 45.64 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.53 -22.44 3.91 -875.51 -3.43 -25.87 16 14 C 0.07 2.48 4.67 86.33 0.40 2.88 16 15 C -0.14 -4.07 5.31 30.65 0.16 -3.90 16 16 C 0.11 2.88 2.50 45.00 0.11 3.00 16 17 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 18 N -0.84 -16.86 8.57 -168.35 -1.44 -18.30 16 19 C -0.05 -1.41 0.59 -52.13 -0.03 -1.45 16 20 C -0.12 -3.11 8.35 71.98 0.60 -2.51 16 21 C -0.13 -3.62 7.65 71.98 0.55 -3.07 16 22 C 0.07 2.38 3.77 86.33 0.33 2.71 16 23 H 0.04 1.97 6.64 -2.39 -0.02 1.96 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.03 1.68 7.99 -2.38 -0.02 1.66 16 26 H 0.03 1.43 6.43 -2.39 -0.02 1.41 16 27 H 0.04 1.78 6.82 -2.39 -0.02 1.76 16 28 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.02 0.63 6.73 -2.39 -0.02 0.61 16 30 H 0.06 2.37 6.03 -2.39 -0.01 2.36 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.94 6.58 -2.39 -0.02 1.92 16 33 H 0.35 5.78 9.04 -89.70 -0.81 4.97 16 34 H 0.34 6.54 6.94 -89.69 -0.62 5.92 16 35 H 0.07 1.71 7.68 -2.39 -0.02 1.70 16 36 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.66 6.01 -2.39 -0.01 1.65 16 39 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.58 6.54 -2.39 -0.02 1.57 16 41 H 0.05 1.96 8.07 -2.38 -0.02 1.94 16 42 H 0.02 0.70 6.63 -2.39 -0.02 0.68 16 Total: -1.00 -57.21 303.71 0.53 -56.68 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.43 Total: 20.60 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.56 Total: -27.10 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -4.62 Total: -95.82 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -57.21 0.53 -56.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308810185.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -57.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds