Wall clock time and date at job start Mon Mar 30 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46903 * 109.47096 * 64.99801 * 3 2 1 14 14 C 1.46845 * 110.99996 * 66.04797 * 13 3 2 15 15 C 1.53035 * 109.52090 * 185.83789 * 14 13 3 16 16 C 1.53114 * 109.28221 * 300.81869 * 15 14 13 17 17 H 1.09001 * 109.52572 * 297.69339 * 16 15 14 18 18 N 1.46893 * 109.52592 * 177.55891 * 16 15 14 19 19 C 1.53127 * 109.15864 * 57.65802 * 16 15 14 20 20 C 1.53000 * 109.50249 * 62.28337 * 19 16 15 21 21 C 1.53001 * 109.50172 * 182.36671 * 19 16 15 22 22 C 1.46844 * 110.99784 * 190.25904 * 13 3 2 23 23 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 25 25 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 26 26 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 27 27 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46060 * 305.85631 * 14 13 3 30 30 H 1.09005 * 109.45859 * 65.82188 * 14 13 3 31 31 H 1.08996 * 109.50481 * 60.76927 * 15 14 13 32 32 H 1.09001 * 109.50212 * 180.84146 * 15 14 13 33 33 H 1.00907 * 110.99940 * 60.00136 * 18 16 15 34 34 H 1.00898 * 111.00668 * 183.95464 * 18 16 15 35 35 H 1.08998 * 109.46618 * 60.00421 * 20 19 16 36 36 H 1.08996 * 109.46644 * 179.97438 * 20 19 16 37 37 H 1.08994 * 109.47065 * 300.00116 * 20 19 16 38 38 H 1.08994 * 109.47213 * 60.00325 * 21 19 16 39 39 H 1.09004 * 109.46363 * 179.97438 * 21 19 16 40 40 H 1.08997 * 109.46829 * 299.99757 * 21 19 16 41 41 H 1.09001 * 109.46759 * 294.17421 * 22 13 3 42 42 H 1.09006 * 109.46597 * 54.14993 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.3979 0.2167 -2.6503 11 1 6.4994 2.2815 -1.3821 12 1 6.5975 0.1474 -0.2348 13 7 1.6514 2.0993 1.2552 14 6 2.3338 1.4875 2.4025 15 6 1.7980 2.0962 3.7004 16 6 2.0385 3.6083 3.6866 17 1 3.1096 3.8065 3.6463 18 7 1.4740 4.2063 4.9038 19 6 1.3581 4.2142 2.4559 20 6 -0.1520 3.9833 2.5416 21 6 1.6430 5.7165 2.4025 22 6 1.9067 3.5441 1.1941 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8294 -0.0612 -2.9498 29 1 2.1513 0.4129 2.4029 30 1 3.4054 1.6737 2.3292 31 1 0.7292 1.8984 3.7810 32 1 2.3153 1.6526 4.5511 33 1 1.9039 3.8183 5.7302 34 1 1.5630 5.2112 4.8879 35 1 -0.5415 4.4578 3.4422 36 1 -0.6357 4.4152 1.6655 37 1 -0.3543 2.9129 2.5782 38 1 2.7188 5.8803 2.3400 39 1 1.1588 6.1471 1.5260 40 1 1.2547 6.1921 3.3031 41 1 2.9802 3.7207 1.1266 42 1 1.4138 3.9633 0.3169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308810186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:12 Heat of formation + Delta-G solvation = -12.205554 kcal Electronic energy + Delta-G solvation = -19126.962111 eV Core-core repulsion = 16527.044675 eV Total energy + Delta-G solvation = -2599.917436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36493 -35.95625 -32.75348 -32.48569 -31.21264 -29.34911 -26.79245 -26.44742 -25.34768 -23.25669 -21.81912 -21.41343 -18.88688 -17.79262 -16.24413 -15.74525 -15.31802 -14.67502 -14.32848 -14.18142 -13.64960 -13.18145 -13.00543 -12.76821 -12.46107 -12.06742 -11.88020 -11.55360 -11.49825 -11.22529 -11.07087 -10.93557 -10.86880 -10.53870 -10.37066 -10.36749 -10.15837 -9.84816 -9.65817 -9.55147 -9.19998 -9.01136 -8.45271 -8.33582 -7.02431 -5.96329 -4.09988 3.27330 3.32850 3.35131 4.40093 4.71361 5.02878 5.08442 5.24932 5.28324 5.46782 5.71474 5.85149 5.89684 6.02500 6.09477 6.20386 6.27666 6.29279 6.37055 6.40355 6.46612 6.52344 6.63818 6.71983 6.72239 6.77873 6.82085 6.92120 7.05379 7.17954 7.23694 7.38359 7.41641 7.60072 7.65345 7.80237 8.04100 8.20499 8.38634 8.53727 9.00924 9.57267 11.02188 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.008290 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.640987 B = 3376.853107 C = 3815.804416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.287 1.287 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.528 5.528 14 C 0.063 3.937 15 C -0.110 4.110 16 C 0.103 3.897 17 H 0.025 0.975 18 N -0.844 5.844 19 C -0.056 4.056 20 C -0.117 4.117 21 C -0.142 4.142 22 C 0.076 3.924 23 H 0.024 0.976 24 H 0.048 0.952 25 H 0.038 0.962 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.333 0.667 34 H 0.334 0.666 35 H 0.049 0.951 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.030 0.970 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 5.971 9.647 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.066 4.066 15 C -0.148 4.148 16 C -0.008 4.008 17 H 0.043 0.957 18 N -0.374 5.374 19 C -0.057 4.057 20 C -0.175 4.175 21 C -0.200 4.200 22 C -0.053 4.053 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.109 0.891 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.693 5.484 9.267 11.747 hybrid contribution 3.116 0.451 -0.144 3.152 sum -1.577 5.935 9.124 10.998 Atomic orbital electron populations 1.21700 0.98855 0.98322 1.00593 1.21590 0.92251 0.99206 1.01798 1.19250 0.92866 0.91194 0.85855 0.94547 1.21721 0.92997 1.38008 1.05369 0.92738 1.24906 0.97643 0.95130 0.95735 1.69866 1.34775 1.38310 1.09414 0.86773 0.86441 0.78132 0.77326 1.21236 1.20474 1.20410 1.62347 1.56714 1.01467 1.04633 1.21878 0.96395 0.98827 0.89502 1.21697 1.02265 0.93442 0.97428 1.21357 0.94785 0.95105 0.89570 0.95658 1.58815 1.64794 1.09681 1.04075 1.20619 0.97030 0.93635 0.94387 1.21598 0.93428 1.02728 0.99717 1.21869 1.00802 0.96037 1.01323 1.21871 0.98149 0.89944 0.95374 0.95727 0.93267 0.94326 0.89094 0.94963 0.92884 0.91123 0.94824 0.90706 0.93266 0.85506 0.85244 0.93154 0.94288 0.91350 0.93412 0.92581 0.92906 0.95148 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.45 16 2 C -0.11 -2.60 5.17 -26.73 -0.14 -2.73 16 3 C 0.21 5.22 1.70 -68.87 -0.12 5.10 16 4 H 0.04 0.99 7.98 -51.92 -0.41 0.58 16 5 C -0.54 -14.36 7.23 -34.44 -0.25 -14.61 16 6 H 0.05 1.46 5.84 -52.49 -0.31 1.15 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.82 11.29 55.43 0.63 -24.20 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.53 -10.87 3.34 -228.08 -0.76 -11.63 16 14 C 0.06 1.23 4.78 -3.84 -0.02 1.21 16 15 C -0.11 -1.76 5.32 -26.65 -0.14 -1.90 16 16 C 0.10 1.52 2.50 -67.59 -0.17 1.35 16 17 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 18 N -0.84 -10.21 8.38 -4.56 -0.04 -10.25 16 19 C -0.06 -0.87 0.59 -154.42 -0.09 -0.96 16 20 C -0.12 -1.81 7.85 37.16 0.29 -1.52 16 21 C -0.14 -1.90 8.21 37.16 0.30 -1.59 16 22 C 0.08 1.46 3.91 -3.83 -0.01 1.45 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 27 H 0.03 0.75 6.23 -51.93 -0.32 0.42 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.07 1.43 6.13 -51.93 -0.32 1.11 16 30 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16 31 H 0.07 1.24 6.58 -51.93 -0.34 0.90 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.33 3.54 9.04 -39.29 -0.36 3.18 16 34 H 0.33 3.62 7.15 -39.29 -0.28 3.34 16 35 H 0.05 0.73 7.55 -51.93 -0.39 0.33 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.16 6.01 -51.93 -0.31 0.85 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.61 6.63 -51.93 -0.34 0.27 16 41 H 0.03 0.64 7.31 -51.93 -0.38 0.26 16 42 H 0.06 1.26 8.01 -51.93 -0.42 0.84 16 LS Contribution 306.07 15.07 4.61 4.61 Total: -1.00 -26.78 306.07 -7.98 -34.76 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -7.32 Total: 5.49 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.07 Total: -14.89 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.17 Total: -46.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.78 -7.98 -34.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308810186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.551 kcal (2) G-P(sol) polarization free energy of solvation -26.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds