Wall clock time and date at job start Mon Mar 30 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47204 * 2 1 4 4 H 1.09007 * 109.46721 * 305.00148 * 3 2 1 5 5 C 1.50694 * 109.47355 * 184.99859 * 3 2 1 6 6 H 1.08000 * 120.00563 * 239.99848 * 5 3 2 7 7 C 1.37885 * 119.99902 * 60.00012 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46903 * 109.47096 * 64.99801 * 3 2 1 14 14 C 1.46845 * 110.99996 * 66.04797 * 13 3 2 15 15 C 1.53035 * 109.52090 * 185.83789 * 14 13 3 16 16 C 1.53114 * 109.28221 * 300.81869 * 15 14 13 17 17 H 1.09001 * 109.52572 * 297.69339 * 16 15 14 18 18 N 1.46893 * 109.52592 * 177.55891 * 16 15 14 19 19 C 1.53127 * 109.15864 * 57.65802 * 16 15 14 20 20 C 1.53000 * 109.50249 * 62.28337 * 19 16 15 21 21 C 1.53001 * 109.50172 * 182.36671 * 19 16 15 22 22 C 1.46844 * 110.99784 * 190.25904 * 13 3 2 23 23 H 1.09000 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46922 * 299.99976 * 1 2 3 25 25 H 1.08997 * 109.46919 * 60.00309 * 1 2 3 26 26 H 1.09001 * 109.47496 * 240.00053 * 2 1 3 27 27 H 1.09002 * 109.47332 * 119.99482 * 2 1 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46060 * 305.85631 * 14 13 3 30 30 H 1.09005 * 109.45859 * 65.82188 * 14 13 3 31 31 H 1.08996 * 109.50481 * 60.76927 * 15 14 13 32 32 H 1.09001 * 109.50212 * 180.84146 * 15 14 13 33 33 H 1.00907 * 110.99940 * 60.00136 * 18 16 15 34 34 H 1.00898 * 111.00668 * 183.95464 * 18 16 15 35 35 H 1.08998 * 109.46618 * 60.00421 * 20 19 16 36 36 H 1.08996 * 109.46644 * 179.97438 * 20 19 16 37 37 H 1.08994 * 109.47065 * 300.00116 * 20 19 16 38 38 H 1.08994 * 109.47213 * 60.00325 * 21 19 16 39 39 H 1.09004 * 109.46363 * 179.97438 * 21 19 16 40 40 H 1.08997 * 109.46829 * 299.99757 * 21 19 16 41 41 H 1.09001 * 109.46759 * 294.17421 * 22 13 3 42 42 H 1.09006 * 109.46597 * 54.14993 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1729 9 14 6.0050 0.8813 -1.3817 10 1 6.3979 0.2167 -2.6503 11 1 6.4994 2.2815 -1.3821 12 1 6.5975 0.1474 -0.2348 13 7 1.6514 2.0993 1.2552 14 6 2.3338 1.4875 2.4025 15 6 1.7980 2.0962 3.7004 16 6 2.0385 3.6083 3.6866 17 1 3.1096 3.8065 3.6463 18 7 1.4740 4.2063 4.9038 19 6 1.3581 4.2142 2.4559 20 6 -0.1520 3.9833 2.5416 21 6 1.6430 5.7165 2.4025 22 6 1.9067 3.5441 1.1941 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8294 -0.0612 -2.9498 29 1 2.1513 0.4129 2.4029 30 1 3.4054 1.6737 2.3292 31 1 0.7292 1.8984 3.7810 32 1 2.3153 1.6526 4.5511 33 1 1.9039 3.8183 5.7302 34 1 1.5630 5.2112 4.8879 35 1 -0.5415 4.4578 3.4422 36 1 -0.6357 4.4152 1.6655 37 1 -0.3543 2.9129 2.5782 38 1 2.7188 5.8803 2.3400 39 1 1.1588 6.1471 1.5260 40 1 1.2547 6.1921 3.3031 41 1 2.9802 3.7207 1.1266 42 1 1.4138 3.9633 0.3169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308810186.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:12 Heat of formation + Delta-G solvation = -29.117138 kcal Electronic energy + Delta-G solvation = -19127.695452 eV Core-core repulsion = 16527.044675 eV Total energy + Delta-G solvation = -2600.650777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81036 -37.61023 -34.51840 -33.81528 -33.02807 -30.78837 -28.33357 -27.94394 -26.85231 -25.04444 -23.34804 -22.92867 -20.75391 -19.19627 -18.17472 -17.16905 -16.78820 -16.26680 -15.80584 -15.65369 -15.27193 -14.72423 -14.59310 -14.34817 -13.79654 -13.64515 -13.41256 -13.15869 -12.98707 -12.78059 -12.75857 -12.63722 -12.40991 -12.23986 -11.98912 -11.85105 -11.69759 -11.55035 -11.46694 -11.13145 -10.87162 -10.76923 -10.41822 -9.48517 -8.84852 -8.01889 -6.25484 1.35241 1.36058 1.43291 2.38480 3.14514 3.40975 3.68362 3.81918 3.95030 4.19470 4.40835 4.52953 4.56795 4.60400 4.69240 4.76587 4.85740 4.91171 4.93800 4.96765 4.99323 5.01700 5.12134 5.17341 5.28361 5.31259 5.40437 5.44025 5.49575 5.52440 5.53441 5.65025 5.77329 5.82993 6.09881 6.23243 6.33888 6.42427 6.72161 6.75188 6.97428 7.45160 8.91562 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.008290 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.640987 B = 3376.853107 C = 3815.804416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.282 1.282 11 H -0.277 1.277 12 H -0.274 1.274 13 N -0.520 5.520 14 C 0.066 3.934 15 C -0.101 4.101 16 C 0.110 3.890 17 H 0.015 0.985 18 N -0.836 5.836 19 C -0.052 4.052 20 C -0.109 4.109 21 C -0.138 4.138 22 C 0.078 3.922 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.061 0.939 30 H 0.010 0.990 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.346 0.654 34 H 0.346 0.654 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.005 0.995 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 6.808 11.629 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.200 1.200 13 N -0.244 5.244 14 C -0.063 4.063 15 C -0.139 4.139 16 C -0.002 4.002 17 H 0.033 0.967 18 N -0.368 5.368 19 C -0.053 4.053 20 C -0.166 4.166 21 C -0.196 4.196 22 C -0.051 4.051 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.023 0.977 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.002 6.335 11.274 13.865 hybrid contribution 3.203 0.201 -0.758 3.297 sum -1.799 6.536 10.516 12.511 Atomic orbital electron populations 1.21553 0.96276 0.99717 1.00634 1.21429 0.94508 0.98171 1.00200 1.19024 0.91576 0.91576 0.86514 0.98188 1.21949 0.94248 1.37593 1.05141 0.93537 1.25598 1.01616 0.95033 0.95599 1.69994 1.36227 1.38933 1.09762 0.85849 0.81716 0.78088 0.77399 1.20752 1.20250 1.19956 1.62318 1.56382 1.02156 1.03498 1.21867 0.95033 0.98566 0.90785 1.21592 1.02208 0.94343 0.95737 1.21146 0.94197 0.94310 0.90513 0.96705 1.58703 1.64338 1.10484 1.03271 1.20573 0.97156 0.94894 0.92638 1.21511 0.92950 1.01720 1.00448 1.21836 1.00865 0.94196 1.02698 1.21906 0.96641 0.89296 0.97303 0.93638 0.92362 0.95025 0.92087 0.95007 0.92944 0.92103 0.97198 0.90598 0.91284 0.84068 0.83950 0.91449 0.94480 0.93007 0.93660 0.92524 0.90306 0.97667 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.80 71.98 0.71 -4.35 16 2 C -0.10 -5.04 5.17 30.60 0.16 -4.88 16 3 C 0.22 11.10 1.70 44.17 0.08 11.18 16 4 H 0.00 0.01 7.98 -2.38 -0.02 -0.01 16 5 C -0.55 -30.06 7.23 25.60 0.19 -29.88 16 6 H 0.05 2.57 5.84 -2.91 -0.02 2.55 16 7 C 0.02 1.19 5.29 84.66 0.45 1.63 16 8 N -0.91 -52.38 11.29 21.45 0.24 -52.14 16 9 Si 0.94 43.99 29.54 68.60 2.03 46.02 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 13 N -0.52 -21.80 3.34 -875.50 -2.92 -24.72 16 14 C 0.07 2.59 4.78 86.33 0.41 3.00 16 15 C -0.10 -3.04 5.32 30.64 0.16 -2.88 16 16 C 0.11 3.02 2.50 45.00 0.11 3.13 16 17 H 0.02 0.45 8.14 -2.39 -0.02 0.43 16 18 N -0.84 -17.23 8.38 -168.35 -1.41 -18.64 16 19 C -0.05 -1.53 0.59 -52.12 -0.03 -1.56 16 20 C -0.11 -3.13 7.85 71.98 0.57 -2.56 16 21 C -0.14 -3.38 8.21 71.98 0.59 -2.79 16 22 C 0.08 3.04 3.91 86.33 0.34 3.38 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 3.33 5.95 -2.39 -0.01 3.31 16 27 H 0.03 1.50 6.23 -2.39 -0.01 1.48 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.06 2.46 6.13 -2.39 -0.01 2.45 16 30 H 0.01 0.43 6.36 -2.38 -0.02 0.41 16 31 H 0.08 2.33 6.58 -2.39 -0.02 2.31 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.35 6.02 9.04 -89.69 -0.81 5.21 16 34 H 0.35 6.07 7.15 -89.70 -0.64 5.43 16 35 H 0.07 1.72 7.55 -2.39 -0.02 1.70 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.66 6.01 -2.39 -0.01 1.65 16 38 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.08 1.53 6.63 -2.39 -0.02 1.51 16 41 H 0.01 0.22 7.31 -2.39 -0.02 0.21 16 42 H 0.05 2.03 8.01 -2.38 -0.02 2.01 16 Total: -1.00 -58.58 306.07 1.21 -57.38 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -0.45 Total: 18.69 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.72 Total: -26.57 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -4.09 Total: -95.51 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -58.58 1.21 -57.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308810186.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.260 kcal (2) G-P(sol) polarization free energy of solvation -58.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds