Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46939 * 2 1 4 4 H 1.09004 * 109.46951 * 57.15214 * 3 2 1 5 5 C 1.50696 * 109.46932 * 177.15013 * 3 2 1 6 6 H 1.07998 * 120.00267 * 119.99889 * 5 3 2 7 7 C 1.37879 * 120.00250 * 300.00298 * 5 3 2 8 8 N 1.31511 * 119.99708 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00087 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47059 * 59.99913 * 9 7 5 11 11 H 1.48504 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47290 * 299.99609 * 9 7 5 13 13 N 1.46894 * 109.47271 * 297.15093 * 3 2 1 14 14 C 1.46851 * 111.00222 * 174.86166 * 13 3 2 15 15 C 1.53037 * 109.52634 * 185.83990 * 14 13 3 16 16 C 1.53118 * 109.27449 * 300.82069 * 15 14 13 17 17 H 1.09001 * 109.58052 * 297.71602 * 16 15 14 18 18 N 1.46903 * 109.52022 * 177.55887 * 16 15 14 19 19 C 1.53121 * 109.16054 * 57.65746 * 16 15 14 20 20 C 1.53005 * 109.50181 * 182.39863 * 19 16 15 21 21 C 1.53001 * 109.50638 * 62.28354 * 19 16 15 22 22 C 1.46847 * 111.00067 * 299.07541 * 13 3 2 23 23 H 1.09002 * 109.46943 * 295.13603 * 1 2 3 24 24 H 1.08996 * 109.47314 * 55.13682 * 1 2 3 25 25 H 1.08999 * 109.47121 * 175.13516 * 1 2 3 26 26 H 1.08994 * 109.46996 * 120.00059 * 2 1 3 27 27 H 1.09002 * 109.46912 * 239.99935 * 2 1 3 28 28 H 0.97010 * 119.99991 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46378 * 305.85772 * 14 13 3 30 30 H 1.09000 * 109.45785 * 65.82330 * 14 13 3 31 31 H 1.08997 * 109.50357 * 180.88085 * 15 14 13 32 32 H 1.09001 * 109.53194 * 60.78021 * 15 14 13 33 33 H 1.00894 * 110.99925 * 60.31709 * 18 16 15 34 34 H 1.00904 * 111.00312 * 184.27824 * 18 16 15 35 35 H 1.09001 * 109.47274 * 179.79885 * 20 19 16 36 36 H 1.08995 * 109.47236 * 299.80086 * 20 19 16 37 37 H 1.09007 * 109.46992 * 59.80452 * 20 19 16 38 38 H 1.09005 * 109.46720 * 300.19740 * 21 19 16 39 39 H 1.09002 * 109.47244 * 60.19477 * 21 19 16 40 40 H 1.08994 * 109.47135 * 180.19584 * 21 19 16 41 41 H 1.08999 * 109.45745 * 294.17466 * 22 13 3 42 42 H 1.08998 * 109.46166 * 54.15268 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6355 1.9708 0.8634 5 6 3.5453 1.4431 0.0706 6 1 4.1229 1.8974 -0.7208 7 6 4.1853 0.8635 1.1456 8 7 3.4820 0.3106 2.1096 9 14 6.0512 0.8649 1.2335 10 1 6.5457 2.2652 1.2339 11 1 6.4885 0.1856 2.4795 12 1 6.6027 0.1455 0.0573 13 7 1.6073 2.1148 -1.2323 14 6 1.9742 3.5366 -1.2128 15 6 1.3831 4.2343 -2.4399 16 6 1.9205 3.5667 -3.7087 17 1 3.0034 3.6832 -3.7522 18 7 1.3115 4.1941 -4.8892 19 6 1.5668 2.0771 -3.6812 20 6 2.1519 1.3903 -4.9170 21 6 0.0456 1.9132 -3.6770 22 6 2.1526 1.4419 -2.4182 23 1 -0.3633 0.4365 0.9304 24 1 -0.3634 0.5874 -0.8432 25 1 -0.3633 -1.0239 -0.0872 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.9322 -0.0975 2.8657 29 1 1.5825 4.0004 -0.3075 30 1 3.0600 3.6317 -1.2288 31 1 1.6687 5.2862 -2.4333 32 1 0.2964 4.1521 -2.4177 33 1 1.5308 5.1781 -4.9293 34 1 1.5969 3.7251 -5.7358 35 1 1.9029 0.3294 -4.8951 36 1 1.7343 1.8431 -5.8162 37 1 3.2355 1.5092 -4.9198 38 1 -0.3703 2.4044 -2.7973 39 1 -0.3711 2.3658 -4.5769 40 1 -0.2055 0.8529 -3.6540 41 1 3.2375 1.5469 -2.4285 42 1 1.8903 0.3844 -2.3884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308810187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = -11.905853 kcal Electronic energy + Delta-G solvation = -19203.914175 eV Core-core repulsion = 16604.009735 eV Total energy + Delta-G solvation = -2599.904440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38561 -35.90379 -32.74099 -32.55607 -31.34674 -29.09368 -26.77292 -26.42560 -25.50637 -23.25947 -22.19044 -20.79051 -19.04532 -17.88208 -16.32702 -15.64058 -15.29362 -14.71526 -14.40598 -13.89780 -13.62813 -13.44396 -12.90923 -12.72289 -12.43864 -12.20265 -11.73094 -11.59561 -11.40512 -11.35863 -11.06458 -10.95356 -10.76634 -10.63614 -10.47151 -10.35131 -9.99999 -9.84822 -9.67377 -9.53475 -9.20898 -9.00713 -8.45074 -8.33591 -7.03026 -5.96160 -4.09823 3.27330 3.32849 3.35135 4.40164 4.71547 5.04165 5.09942 5.25666 5.27212 5.48128 5.71495 5.85816 5.89831 6.05143 6.08978 6.21487 6.26744 6.30906 6.35497 6.38179 6.51067 6.54227 6.62068 6.71846 6.72772 6.78650 6.84358 6.90919 7.05577 7.17119 7.24873 7.38015 7.40726 7.60367 7.65911 7.80044 8.03841 8.21168 8.38811 8.52726 9.00894 9.57384 11.02276 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.008419 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.347500 B = 3325.008578 C = 3729.592934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.541 4.541 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.528 5.528 14 C 0.065 3.935 15 C -0.109 4.109 16 C 0.103 3.897 17 H 0.025 0.975 18 N -0.844 5.844 19 C -0.057 4.057 20 C -0.142 4.142 21 C -0.117 4.117 22 C 0.074 3.926 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.023 0.977 26 H 0.090 0.910 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.333 0.667 34 H 0.335 0.665 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 4.117 -10.624 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.252 5.252 14 C -0.065 4.065 15 C -0.147 4.147 16 C -0.008 4.008 17 H 0.043 0.957 18 N -0.374 5.374 19 C -0.058 4.058 20 C -0.200 4.200 21 C -0.174 4.174 22 C -0.056 4.056 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.108 0.892 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.802 3.774 -10.121 11.821 hybrid contribution 3.164 0.209 -0.099 3.172 sum -1.638 3.982 -10.220 11.090 Atomic orbital electron populations 1.21735 0.98833 0.98462 1.00716 1.21609 0.92246 0.99215 1.01860 1.19243 0.92509 0.91010 0.86420 0.94436 1.21703 0.92871 1.37386 1.06094 0.92827 1.24900 0.97747 0.95135 0.95613 1.69866 1.34948 1.37767 1.09800 0.86775 0.86469 0.78125 0.77316 1.20460 1.21237 1.20432 1.62356 1.58397 1.00926 1.03503 1.21810 0.97959 0.90411 0.96270 1.21669 1.01895 0.97410 0.93704 1.21362 0.94715 0.94365 0.90397 0.95663 1.58815 1.66877 1.06597 1.05081 1.20648 0.97121 0.93097 0.94954 1.21868 1.00030 1.00677 0.97449 1.21598 0.93891 1.00064 1.01857 1.21942 0.96598 0.98226 0.88785 0.94381 0.92874 0.95754 0.89155 0.94907 0.92886 0.91768 0.94976 0.93215 0.90638 0.85541 0.85213 0.92575 0.92964 0.93438 0.91413 0.93235 0.94247 0.95040 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.85 37.16 0.37 -2.49 16 2 C -0.11 -2.61 5.00 -26.73 -0.13 -2.75 16 3 C 0.21 5.21 1.77 -68.87 -0.12 5.09 16 4 H 0.04 1.02 8.08 -51.93 -0.42 0.60 16 5 C -0.54 -14.35 7.19 -34.44 -0.25 -14.60 16 6 H 0.05 1.44 5.84 -52.49 -0.31 1.13 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 8 N -0.89 -24.83 11.30 55.43 0.63 -24.20 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.53 -10.86 3.20 -228.08 -0.73 -11.59 16 14 C 0.06 1.25 5.12 -3.83 -0.02 1.23 16 15 C -0.11 -1.72 5.32 -26.65 -0.14 -1.86 16 16 C 0.10 1.52 2.50 -67.59 -0.17 1.35 16 17 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 18 N -0.84 -10.21 8.39 -4.56 -0.04 -10.25 16 19 C -0.06 -0.90 0.59 -154.42 -0.09 -0.99 16 20 C -0.14 -1.93 8.20 37.16 0.30 -1.63 16 21 C -0.12 -1.81 7.85 37.16 0.29 -1.51 16 22 C 0.07 1.42 3.52 -3.83 -0.01 1.41 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 1.05 7.55 -51.93 -0.39 0.65 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 2.39 6.00 -51.93 -0.31 2.08 16 27 H 0.03 0.76 6.16 -51.93 -0.32 0.44 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.06 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.03 0.68 6.97 -51.93 -0.36 0.32 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.24 6.58 -51.93 -0.34 0.89 16 33 H 0.33 3.52 9.04 -39.29 -0.36 3.17 16 34 H 0.33 3.64 7.15 -39.29 -0.28 3.36 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.61 6.64 -51.93 -0.34 0.27 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.15 6.01 -51.93 -0.31 0.84 16 39 H 0.05 0.72 7.55 -51.93 -0.39 0.33 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.03 0.68 6.62 -51.93 -0.34 0.33 16 42 H 0.07 1.45 5.98 -51.93 -0.31 1.14 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -26.78 305.49 -7.94 -34.72 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.31 Total: 5.58 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.07 Total: -14.98 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.14 Total: -46.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.78 -7.94 -34.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308810187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.812 kcal (2) G-P(sol) polarization free energy of solvation -26.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds