Wall clock time and date at job start Mon Mar 30 2020 03:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46939 * 2 1 4 4 H 1.09004 * 109.46951 * 57.15214 * 3 2 1 5 5 C 1.50696 * 109.46932 * 177.15013 * 3 2 1 6 6 H 1.07998 * 120.00267 * 119.99889 * 5 3 2 7 7 C 1.37879 * 120.00250 * 300.00298 * 5 3 2 8 8 N 1.31511 * 119.99708 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00087 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47059 * 59.99913 * 9 7 5 11 11 H 1.48504 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47290 * 299.99609 * 9 7 5 13 13 N 1.46894 * 109.47271 * 297.15093 * 3 2 1 14 14 C 1.46851 * 111.00222 * 174.86166 * 13 3 2 15 15 C 1.53037 * 109.52634 * 185.83990 * 14 13 3 16 16 C 1.53118 * 109.27449 * 300.82069 * 15 14 13 17 17 H 1.09001 * 109.58052 * 297.71602 * 16 15 14 18 18 N 1.46903 * 109.52022 * 177.55887 * 16 15 14 19 19 C 1.53121 * 109.16054 * 57.65746 * 16 15 14 20 20 C 1.53005 * 109.50181 * 182.39863 * 19 16 15 21 21 C 1.53001 * 109.50638 * 62.28354 * 19 16 15 22 22 C 1.46847 * 111.00067 * 299.07541 * 13 3 2 23 23 H 1.09002 * 109.46943 * 295.13603 * 1 2 3 24 24 H 1.08996 * 109.47314 * 55.13682 * 1 2 3 25 25 H 1.08999 * 109.47121 * 175.13516 * 1 2 3 26 26 H 1.08994 * 109.46996 * 120.00059 * 2 1 3 27 27 H 1.09002 * 109.46912 * 239.99935 * 2 1 3 28 28 H 0.97010 * 119.99991 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.46378 * 305.85772 * 14 13 3 30 30 H 1.09000 * 109.45785 * 65.82330 * 14 13 3 31 31 H 1.08997 * 109.50357 * 180.88085 * 15 14 13 32 32 H 1.09001 * 109.53194 * 60.78021 * 15 14 13 33 33 H 1.00894 * 110.99925 * 60.31709 * 18 16 15 34 34 H 1.00904 * 111.00312 * 184.27824 * 18 16 15 35 35 H 1.09001 * 109.47274 * 179.79885 * 20 19 16 36 36 H 1.08995 * 109.47236 * 299.80086 * 20 19 16 37 37 H 1.09007 * 109.46992 * 59.80452 * 20 19 16 38 38 H 1.09005 * 109.46720 * 300.19740 * 21 19 16 39 39 H 1.09002 * 109.47244 * 60.19477 * 21 19 16 40 40 H 1.08994 * 109.47135 * 180.19584 * 21 19 16 41 41 H 1.08999 * 109.45745 * 294.17466 * 22 13 3 42 42 H 1.08998 * 109.46166 * 54.15268 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6355 1.9708 0.8634 5 6 3.5453 1.4431 0.0706 6 1 4.1229 1.8974 -0.7208 7 6 4.1853 0.8635 1.1456 8 7 3.4820 0.3106 2.1096 9 14 6.0512 0.8649 1.2335 10 1 6.5457 2.2652 1.2339 11 1 6.4885 0.1856 2.4795 12 1 6.6027 0.1455 0.0573 13 7 1.6073 2.1148 -1.2323 14 6 1.9742 3.5366 -1.2128 15 6 1.3831 4.2343 -2.4399 16 6 1.9205 3.5667 -3.7087 17 1 3.0034 3.6832 -3.7522 18 7 1.3115 4.1941 -4.8892 19 6 1.5668 2.0771 -3.6812 20 6 2.1519 1.3903 -4.9170 21 6 0.0456 1.9132 -3.6770 22 6 2.1526 1.4419 -2.4182 23 1 -0.3633 0.4365 0.9304 24 1 -0.3634 0.5874 -0.8432 25 1 -0.3633 -1.0239 -0.0872 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 3.9322 -0.0975 2.8657 29 1 1.5825 4.0004 -0.3075 30 1 3.0600 3.6317 -1.2288 31 1 1.6687 5.2862 -2.4333 32 1 0.2964 4.1521 -2.4177 33 1 1.5308 5.1781 -4.9293 34 1 1.5969 3.7251 -5.7358 35 1 1.9029 0.3294 -4.8951 36 1 1.7343 1.8431 -5.8162 37 1 3.2355 1.5092 -4.9198 38 1 -0.3703 2.4044 -2.7973 39 1 -0.3711 2.3658 -4.5769 40 1 -0.2055 0.8529 -3.6540 41 1 3.2375 1.5469 -2.4285 42 1 1.8903 0.3844 -2.3884 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308810187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:15 Heat of formation + Delta-G solvation = -28.748773 kcal Electronic energy + Delta-G solvation = -19204.644538 eV Core-core repulsion = 16604.009735 eV Total energy + Delta-G solvation = -2600.634804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83521 -37.54994 -34.54831 -33.85695 -33.12300 -30.56302 -28.31408 -27.91365 -27.02071 -25.06762 -23.67747 -22.28440 -20.91572 -19.36425 -18.17616 -17.10565 -16.74516 -16.25088 -15.95141 -15.40488 -15.22606 -14.91532 -14.65532 -14.24110 -13.80321 -13.63602 -13.30358 -13.21911 -12.99193 -12.88354 -12.74993 -12.54085 -12.45583 -12.26632 -12.03282 -11.88237 -11.62127 -11.49166 -11.46380 -11.08984 -10.87411 -10.79357 -10.41443 -9.48461 -8.85534 -8.01766 -6.25435 1.34987 1.35788 1.43037 2.38338 3.14548 3.41494 3.68553 3.83674 3.94738 4.20739 4.41214 4.54134 4.55501 4.60208 4.70813 4.76671 4.85110 4.91121 4.93545 4.96530 5.02825 5.03476 5.12588 5.18247 5.28599 5.31065 5.39880 5.44490 5.49977 5.52467 5.54091 5.64924 5.80408 5.82110 6.09072 6.23892 6.33934 6.42211 6.72161 6.75229 6.97269 7.45119 8.91472 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.008419 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.347500 B = 3325.008578 C = 3729.592934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.521 5.521 14 C 0.065 3.935 15 C -0.098 4.098 16 C 0.109 3.891 17 H 0.015 0.985 18 N -0.836 5.836 19 C -0.054 4.054 20 C -0.138 4.138 21 C -0.108 4.108 22 C 0.079 3.921 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.261 0.739 29 H 0.053 0.947 30 H 0.009 0.991 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.346 0.654 34 H 0.346 0.654 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.004 0.996 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 4.695 -12.729 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.588 4.588 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.244 5.244 14 C -0.065 4.065 15 C -0.136 4.136 16 C -0.002 4.002 17 H 0.032 0.968 18 N -0.368 5.368 19 C -0.055 4.055 20 C -0.196 4.196 21 C -0.166 4.166 22 C -0.050 4.050 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.027 0.973 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.023 0.977 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.181 4.365 -12.251 13.999 hybrid contribution 3.271 0.054 0.559 3.319 sum -1.910 4.419 -11.692 12.644 Atomic orbital electron populations 1.21588 0.96192 0.99933 1.00733 1.21438 0.94542 0.98157 1.00159 1.19017 0.91293 0.91442 0.86999 0.97993 1.21923 0.94165 1.36967 1.05785 0.93707 1.25589 1.01728 0.95044 0.95460 1.69993 1.36355 1.38386 1.10185 0.85856 0.81744 0.78104 0.77390 1.20187 1.20730 1.20053 1.62324 1.57952 1.01492 1.02613 1.21843 0.96710 0.89899 0.98003 1.21558 1.01554 0.98127 0.92385 1.21155 0.94143 0.93785 0.91128 0.96753 1.58704 1.66227 1.07456 1.04403 1.20608 0.97366 0.93757 0.93779 1.21835 0.99860 1.00733 0.97179 1.21510 0.93233 0.99981 1.01831 1.21929 0.95106 0.97904 0.90024 0.94923 0.92070 0.93641 0.92164 0.95136 0.92941 0.92803 0.97282 0.91212 0.90547 0.84098 0.83942 0.92498 0.90366 0.93752 0.93053 0.91574 0.94333 0.97741 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.85 71.98 0.71 -4.43 16 2 C -0.10 -5.04 5.00 30.59 0.15 -4.88 16 3 C 0.22 11.06 1.77 44.17 0.08 11.14 16 4 H 0.00 0.12 8.08 -2.38 -0.02 0.10 16 5 C -0.55 -30.03 7.19 25.60 0.18 -29.85 16 6 H 0.04 2.48 5.84 -2.91 -0.02 2.47 16 7 C 0.02 1.20 5.30 84.66 0.45 1.65 16 8 N -0.91 -52.39 11.30 21.45 0.24 -52.15 16 9 Si 0.94 44.03 29.54 68.60 2.03 46.06 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 N -0.52 -21.77 3.20 -875.53 -2.80 -24.58 16 14 C 0.06 2.53 5.12 86.33 0.44 2.97 16 15 C -0.10 -2.96 5.32 30.65 0.16 -2.79 16 16 C 0.11 3.01 2.50 44.99 0.11 3.12 16 17 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 18 N -0.84 -17.25 8.39 -168.34 -1.41 -18.67 16 19 C -0.05 -1.60 0.59 -52.13 -0.03 -1.63 16 20 C -0.14 -3.40 8.20 71.98 0.59 -2.81 16 21 C -0.11 -3.09 7.85 71.98 0.57 -2.52 16 22 C 0.08 3.07 3.52 86.33 0.30 3.37 16 23 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 2.36 7.55 -2.39 -0.02 2.34 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.06 3.28 6.00 -2.39 -0.01 3.27 16 27 H 0.03 1.45 6.16 -2.39 -0.01 1.43 16 28 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 29 H 0.05 2.18 8.07 -2.39 -0.02 2.16 16 30 H 0.01 0.39 6.97 -2.39 -0.02 0.37 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.08 2.34 6.58 -2.39 -0.02 2.33 16 33 H 0.35 6.01 9.04 -89.70 -0.81 5.20 16 34 H 0.35 6.10 7.15 -89.69 -0.64 5.46 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.53 6.64 -2.39 -0.02 1.51 16 37 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.05 1.64 6.01 -2.38 -0.01 1.62 16 39 H 0.07 1.68 7.55 -2.39 -0.02 1.66 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.00 0.19 6.62 -2.39 -0.02 0.18 16 42 H 0.06 2.43 5.98 -2.39 -0.01 2.41 16 Total: -1.00 -58.58 305.49 1.32 -57.26 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.45 Total: 18.74 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 3.72 Total: -26.66 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -3.97 Total: -95.39 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -58.58 1.32 -57.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308810187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.509 kcal (2) G-P(sol) polarization free energy of solvation -58.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds