Wall clock time and date at job start Mon Mar 30 2020 03:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47262 * 2 1 4 4 H 1.09001 * 109.46846 * 55.97338 * 3 2 1 5 5 C 1.52996 * 109.47501 * 175.97589 * 3 2 1 6 6 N 1.46898 * 109.47143 * 179.77697 * 5 3 2 7 7 C 1.48533 * 110.99993 * 52.60847 * 6 5 3 8 8 C 1.54935 * 103.23122 * 159.71789 * 7 6 5 9 9 C 1.54596 * 102.91938 * 322.58771 * 8 7 6 10 10 C 1.47910 * 110.99778 * 169.99883 * 6 5 3 11 11 N 1.46898 * 109.46854 * 295.98021 * 3 2 1 12 12 C 1.46896 * 111.00218 * 297.65385 * 11 3 2 13 13 H 1.09008 * 109.46849 * 22.93692 * 12 11 3 14 14 C 1.52994 * 109.47572 * 262.93944 * 12 11 3 15 15 C 1.50701 * 109.47201 * 142.93235 * 12 11 3 16 16 H 1.07999 * 120.00121 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99980 * 180.02562 * 15 12 11 18 18 N 1.31510 * 119.99869 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00039 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47004 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47231 * 119.99886 * 19 17 15 22 22 H 1.48499 * 109.47010 * 240.00061 * 19 17 15 23 23 H 1.08999 * 109.47052 * 305.09584 * 1 2 3 24 24 H 1.09000 * 109.47557 * 65.09830 * 1 2 3 25 25 H 1.08996 * 109.47015 * 185.10595 * 1 2 3 26 26 H 1.09005 * 109.47265 * 240.00615 * 2 1 3 27 27 H 1.08993 * 109.47668 * 120.00062 * 2 1 3 28 28 H 1.09000 * 109.46869 * 299.78264 * 5 3 2 29 29 H 1.08997 * 109.46894 * 59.77898 * 5 3 2 30 30 H 1.09006 * 110.66528 * 278.15849 * 7 6 5 31 31 H 1.09002 * 110.66538 * 41.28020 * 7 6 5 32 32 H 1.08992 * 110.72835 * 204.22868 * 8 7 6 33 33 H 1.08995 * 110.72425 * 80.93764 * 8 7 6 34 34 H 1.09003 * 110.30957 * 263.04024 * 9 8 7 35 35 H 1.08999 * 110.31415 * 140.87511 * 9 8 7 36 36 H 1.08994 * 109.91661 * 333.51338 * 10 6 5 37 37 H 1.08999 * 109.91137 * 94.61002 * 10 6 5 38 38 H 1.00908 * 110.99846 * 173.70571 * 11 3 2 39 39 H 1.09005 * 109.47283 * 175.72182 * 14 12 11 40 40 H 1.08996 * 109.47412 * 55.71923 * 14 12 11 41 41 H 1.08997 * 109.47455 * 295.72026 * 14 12 11 42 42 H 0.97009 * 119.99871 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6189 1.9768 0.8517 5 6 3.5666 1.4438 0.1012 6 7 4.0566 2.8286 0.0958 7 6 3.3693 3.6405 1.1326 8 6 4.3316 4.8366 1.3419 9 6 5.7272 4.1823 1.2235 10 6 5.4963 2.8828 0.4303 11 7 1.6312 2.1064 -1.2450 12 6 2.2265 1.4455 -2.4141 13 1 2.4853 0.4180 -2.1579 14 6 3.4889 2.1987 -2.8380 15 6 1.2361 1.4458 -3.5499 16 1 0.2619 1.8927 -3.4168 17 6 1.5735 0.8756 -4.7590 18 7 2.7596 0.3310 -4.9210 19 14 0.3461 0.8766 -6.1672 20 1 -0.9063 1.5454 -5.7317 21 1 0.9214 1.6075 -7.3248 22 1 0.0471 -0.5227 -6.5642 23 1 -0.3633 0.5908 0.8408 24 1 -0.3634 0.4327 -0.9321 25 1 -0.3633 -1.0236 0.0915 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8697 0.9546 1.0269 29 1 3.9875 0.9062 -0.7484 30 1 2.4001 3.9848 0.7716 31 1 3.2571 3.0710 2.0552 32 1 4.1934 5.2745 2.3304 33 1 4.1899 5.5863 0.5635 34 1 6.1241 3.9559 2.2132 35 1 6.4086 4.8394 0.6832 36 1 5.7683 2.0217 1.0407 37 1 6.0897 2.8919 -0.4840 38 1 1.8662 3.0875 -1.2257 39 1 3.9723 1.6659 -3.6569 40 1 4.1740 2.2643 -1.9927 41 1 3.2201 3.2027 -3.1664 42 1 2.9969 -0.0705 -5.7716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308960389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:37 Heat of formation + Delta-G solvation = 3.606036 kcal Electronic energy + Delta-G solvation = -18770.902783 eV Core-core repulsion = 16171.670988 eV Total energy + Delta-G solvation = -2599.231794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20690 -36.71447 -33.30329 -31.64699 -31.02185 -28.93813 -27.86950 -26.14129 -24.84630 -22.83272 -21.41690 -20.56140 -20.45058 -18.48002 -16.57390 -15.91332 -15.58786 -15.07285 -14.46703 -14.02344 -13.68152 -13.28946 -13.07458 -12.67609 -12.29284 -12.17477 -11.98245 -11.67220 -11.36425 -11.22688 -11.05213 -10.97726 -10.82250 -10.73856 -10.52974 -10.36349 -10.33133 -10.18227 -10.03833 -9.76606 -9.36163 -8.74578 -8.19327 -8.04891 -6.98721 -5.83213 -3.84117 3.39034 3.46684 3.52174 4.22616 4.56302 4.75633 4.80905 5.01845 5.35903 5.39081 5.43219 5.48626 5.59214 5.73060 5.76806 5.82835 5.87026 5.87850 5.90836 6.06020 6.13647 6.19154 6.21815 6.28582 6.45348 6.54214 6.59823 6.92444 7.07990 7.12483 7.17253 7.32479 7.38778 7.44693 7.65030 7.98000 8.10994 8.51004 8.83375 8.83915 9.23514 9.80087 11.23436 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.007155 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.368393 B = 3912.297907 C = 4476.900344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C 0.093 3.907 4 H 0.061 0.939 5 C 0.011 3.989 6 N -0.502 5.502 7 C 0.033 3.967 8 C -0.123 4.123 9 C -0.129 4.129 10 C 0.036 3.964 11 N -0.669 5.669 12 C 0.212 3.788 13 H 0.032 0.968 14 C -0.169 4.169 15 C -0.485 4.485 16 H 0.059 0.941 17 C 0.053 3.947 18 N -0.899 5.899 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.288 1.288 23 H 0.038 0.962 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.021 0.979 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.329 0.671 39 H 0.071 0.929 40 H 0.038 0.962 41 H 0.021 0.979 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 4.429 12.990 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.153 4.153 3 C -0.018 4.018 4 H 0.079 0.921 5 C -0.119 4.119 6 N -0.226 5.226 7 C -0.095 4.095 8 C -0.161 4.161 9 C -0.167 4.167 10 C -0.093 4.093 11 N -0.298 5.298 12 C 0.104 3.896 13 H 0.049 0.951 14 C -0.228 4.228 15 C -0.524 4.524 16 H 0.077 0.923 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.214 1.214 23 H 0.057 0.943 24 H 0.095 0.905 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.090 0.910 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.051 4.181 12.268 13.315 hybrid contribution 0.637 -0.181 -0.032 0.663 sum 3.688 4.000 12.236 13.392 Atomic orbital electron populations 1.21553 0.95411 0.99560 1.02680 1.21560 0.96864 0.95809 1.01085 1.21582 0.89802 0.95613 0.94851 0.92122 1.23276 0.99408 0.88864 1.00372 1.64818 1.02323 1.11297 1.44124 1.23246 0.98605 0.94110 0.93547 1.22470 0.94388 0.97877 1.01389 1.22374 0.97781 0.96906 0.99663 1.22850 0.90820 0.96443 0.99138 1.60943 1.61922 1.05944 1.01006 1.19154 0.90862 0.93107 0.86470 0.95079 1.22524 0.99967 0.99145 1.01189 1.21293 1.00232 1.35311 0.95595 0.92285 1.24926 0.95221 0.96035 0.98480 1.69924 1.19742 1.39736 1.24547 0.86569 0.81672 0.77352 0.82522 1.19882 1.21428 1.21410 0.94285 0.90487 0.94462 0.90701 0.93804 0.96079 0.89389 0.89792 0.94341 0.91601 0.90721 0.92064 0.91282 0.94366 0.90466 0.85316 0.90976 0.94306 0.96000 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 9.73 37.15 0.36 -1.94 16 2 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 3 C 0.09 1.64 2.10 -67.71 -0.14 1.50 16 4 H 0.06 0.99 6.81 -51.93 -0.35 0.64 16 5 C 0.01 0.18 3.59 -3.83 -0.01 0.16 16 6 N -0.50 -7.77 3.21 -230.45 -0.74 -8.51 16 7 C 0.03 0.43 4.98 -1.90 -0.01 0.42 16 8 C -0.12 -1.38 7.06 -24.87 -0.18 -1.56 16 9 C -0.13 -1.43 6.93 -25.38 -0.18 -1.61 16 10 C 0.04 0.48 6.68 -2.75 -0.02 0.47 16 11 N -0.67 -13.97 5.73 -100.96 -0.58 -14.54 16 12 C 0.21 5.22 1.81 -68.87 -0.12 5.09 16 13 H 0.03 0.84 5.07 -51.92 -0.26 0.58 16 14 C -0.17 -4.14 8.36 37.15 0.31 -3.82 16 15 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 16 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 17 C 0.05 1.49 5.30 -17.82 -0.09 1.40 16 18 N -0.90 -26.18 11.37 55.43 0.63 -25.55 16 19 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.54 7.87 -51.93 -0.41 1.13 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.54 6.02 -51.93 -0.31 1.23 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.02 0.33 7.81 -51.93 -0.41 -0.08 16 29 H 0.09 1.73 5.72 -51.93 -0.30 1.43 16 30 H 0.08 1.16 7.14 -51.93 -0.37 0.79 16 31 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.04 0.50 7.57 -51.93 -0.39 0.11 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.33 6.83 7.24 -39.29 -0.28 6.54 16 39 H 0.07 1.97 6.20 -51.93 -0.32 1.65 16 40 H 0.04 0.84 4.33 -51.93 -0.23 0.62 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 311.01 15.07 4.69 4.69 Total: -1.00 -28.30 311.01 -8.95 -37.25 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.40 Total: 5.57 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.53 Total: -15.90 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.69 Total: -48.60 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.30 -8.95 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308960389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.856 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds