Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47262 * 2 1 4 4 H 1.09001 * 109.46846 * 55.97338 * 3 2 1 5 5 C 1.52996 * 109.47501 * 175.97589 * 3 2 1 6 6 N 1.46898 * 109.47143 * 179.77697 * 5 3 2 7 7 C 1.48533 * 110.99993 * 52.60847 * 6 5 3 8 8 C 1.54935 * 103.23122 * 159.71789 * 7 6 5 9 9 C 1.54596 * 102.91938 * 322.58771 * 8 7 6 10 10 C 1.47910 * 110.99778 * 169.99883 * 6 5 3 11 11 N 1.46898 * 109.46854 * 295.98021 * 3 2 1 12 12 C 1.46896 * 111.00218 * 297.65385 * 11 3 2 13 13 H 1.09008 * 109.46849 * 22.93692 * 12 11 3 14 14 C 1.52994 * 109.47572 * 262.93944 * 12 11 3 15 15 C 1.50701 * 109.47201 * 142.93235 * 12 11 3 16 16 H 1.07999 * 120.00121 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99980 * 180.02562 * 15 12 11 18 18 N 1.31510 * 119.99869 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00039 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.47004 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47231 * 119.99886 * 19 17 15 22 22 H 1.48499 * 109.47010 * 240.00061 * 19 17 15 23 23 H 1.08999 * 109.47052 * 305.09584 * 1 2 3 24 24 H 1.09000 * 109.47557 * 65.09830 * 1 2 3 25 25 H 1.08996 * 109.47015 * 185.10595 * 1 2 3 26 26 H 1.09005 * 109.47265 * 240.00615 * 2 1 3 27 27 H 1.08993 * 109.47668 * 120.00062 * 2 1 3 28 28 H 1.09000 * 109.46869 * 299.78264 * 5 3 2 29 29 H 1.08997 * 109.46894 * 59.77898 * 5 3 2 30 30 H 1.09006 * 110.66528 * 278.15849 * 7 6 5 31 31 H 1.09002 * 110.66538 * 41.28020 * 7 6 5 32 32 H 1.08992 * 110.72835 * 204.22868 * 8 7 6 33 33 H 1.08995 * 110.72425 * 80.93764 * 8 7 6 34 34 H 1.09003 * 110.30957 * 263.04024 * 9 8 7 35 35 H 1.08999 * 110.31415 * 140.87511 * 9 8 7 36 36 H 1.08994 * 109.91661 * 333.51338 * 10 6 5 37 37 H 1.08999 * 109.91137 * 94.61002 * 10 6 5 38 38 H 1.00908 * 110.99846 * 173.70571 * 11 3 2 39 39 H 1.09005 * 109.47283 * 175.72182 * 14 12 11 40 40 H 1.08996 * 109.47412 * 55.71923 * 14 12 11 41 41 H 1.08997 * 109.47455 * 295.72026 * 14 12 11 42 42 H 0.97009 * 119.99871 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6189 1.9768 0.8517 5 6 3.5666 1.4438 0.1012 6 7 4.0566 2.8286 0.0958 7 6 3.3693 3.6405 1.1326 8 6 4.3316 4.8366 1.3419 9 6 5.7272 4.1823 1.2235 10 6 5.4963 2.8828 0.4303 11 7 1.6312 2.1064 -1.2450 12 6 2.2265 1.4455 -2.4141 13 1 2.4853 0.4180 -2.1579 14 6 3.4889 2.1987 -2.8380 15 6 1.2361 1.4458 -3.5499 16 1 0.2619 1.8927 -3.4168 17 6 1.5735 0.8756 -4.7590 18 7 2.7596 0.3310 -4.9210 19 14 0.3461 0.8766 -6.1672 20 1 -0.9063 1.5454 -5.7317 21 1 0.9214 1.6075 -7.3248 22 1 0.0471 -0.5227 -6.5642 23 1 -0.3633 0.5908 0.8408 24 1 -0.3634 0.4327 -0.9321 25 1 -0.3633 -1.0236 0.0915 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.8697 0.9546 1.0269 29 1 3.9875 0.9062 -0.7484 30 1 2.4001 3.9848 0.7716 31 1 3.2571 3.0710 2.0552 32 1 4.1934 5.2745 2.3304 33 1 4.1899 5.5863 0.5635 34 1 6.1241 3.9559 2.2132 35 1 6.4086 4.8394 0.6832 36 1 5.7683 2.0217 1.0407 37 1 6.0897 2.8919 -0.4840 38 1 1.8662 3.0875 -1.2257 39 1 3.9723 1.6659 -3.6569 40 1 4.1740 2.2643 -1.9927 41 1 3.2201 3.2027 -3.1664 42 1 2.9969 -0.0705 -5.7716 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308960389.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = -13.875641 kcal Electronic energy + Delta-G solvation = -18771.660845 eV Core-core repulsion = 16171.670988 eV Total energy + Delta-G solvation = -2599.989857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47068 -38.15142 -35.23457 -33.02864 -32.65965 -30.17622 -29.35608 -27.61986 -26.97766 -24.13006 -23.00155 -21.84129 -21.60490 -20.04916 -18.51963 -17.05556 -16.85497 -16.76857 -16.38952 -15.28462 -14.99050 -14.91440 -14.34976 -14.27089 -13.94029 -13.48008 -13.36260 -13.18716 -12.91826 -12.79026 -12.67169 -12.46106 -12.22910 -12.13990 -12.01474 -11.95895 -11.89059 -11.75531 -11.51695 -11.39655 -11.08284 -10.77020 -10.32863 -9.25150 -8.72680 -7.99614 -6.08125 1.41316 1.43202 1.55168 2.48641 3.07979 3.27887 3.72882 3.80887 3.87015 4.09454 4.14546 4.34969 4.39935 4.44248 4.49501 4.65202 4.69387 4.76966 4.78144 4.94374 4.99297 5.01349 5.03979 5.10230 5.14007 5.20072 5.21959 5.32796 5.36408 5.42190 5.56594 5.64668 5.68345 5.83621 5.97555 6.09460 6.16606 6.45829 6.87470 7.04915 7.12148 7.61024 9.04901 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026424 B = 0.007155 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.368393 B = 3912.297907 C = 4476.900344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.114 4.114 3 C 0.095 3.905 4 H 0.084 0.916 5 C 0.022 3.978 6 N -0.524 5.524 7 C 0.032 3.968 8 C -0.118 4.118 9 C -0.122 4.122 10 C 0.032 3.968 11 N -0.670 5.670 12 C 0.225 3.775 13 H 0.009 0.991 14 C -0.151 4.151 15 C -0.502 4.502 16 H 0.047 0.953 17 C 0.006 3.994 18 N -0.924 5.924 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.331 0.669 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.009 0.991 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 5.192 14.830 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.152 4.152 3 C -0.016 4.016 4 H 0.102 0.898 5 C -0.108 4.108 6 N -0.249 5.249 7 C -0.095 4.095 8 C -0.156 4.156 9 C -0.160 4.160 10 C -0.096 4.096 11 N -0.299 5.299 12 C 0.116 3.884 13 H 0.026 0.974 14 C -0.210 4.210 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.029 0.971 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.803 4.952 14.124 15.228 hybrid contribution 0.725 -0.424 -0.544 1.000 sum 3.528 4.529 13.580 14.744 Atomic orbital electron populations 1.21479 0.94904 1.00568 1.01656 1.21552 0.97289 0.95731 1.00646 1.21658 0.90684 0.95492 0.93723 0.89809 1.23009 0.98341 0.89800 0.99674 1.64715 1.03687 1.10510 1.45953 1.23282 0.98524 0.94602 0.93126 1.22461 0.93687 0.96874 1.02548 1.22354 0.97944 0.95445 1.00267 1.22894 0.89450 0.98271 0.99019 1.60805 1.61848 1.05946 1.01297 1.18813 0.90206 0.92201 0.87130 0.97373 1.22340 1.00218 0.97685 1.00789 1.21607 1.00377 1.35179 0.96985 0.93421 1.25648 0.96850 0.95819 1.00833 1.70055 1.21149 1.40286 1.25051 0.85616 0.79636 0.77425 0.79562 1.19465 1.21023 1.20931 0.92073 0.93999 0.93108 0.94374 0.90894 0.94313 0.92901 0.90609 0.93241 0.89163 0.91431 0.90140 0.90670 0.93870 0.92008 0.85171 0.94179 0.92003 0.97132 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.73 71.98 0.70 -3.56 16 2 C -0.11 -3.93 5.27 30.59 0.16 -3.77 16 3 C 0.10 3.25 2.10 44.92 0.09 3.35 16 4 H 0.08 2.52 6.81 -2.39 -0.02 2.50 16 5 C 0.02 0.71 3.59 86.30 0.31 1.02 16 6 N -0.52 -15.58 3.21 -883.02 -2.84 -18.42 16 7 C 0.03 0.77 4.98 86.65 0.43 1.20 16 8 C -0.12 -2.30 7.06 31.80 0.22 -2.08 16 9 C -0.12 -2.36 6.93 31.47 0.22 -2.15 16 10 C 0.03 0.81 6.68 86.44 0.58 1.39 16 11 N -0.67 -28.08 5.73 -473.32 -2.71 -30.79 16 12 C 0.22 11.41 1.81 44.17 0.08 11.49 16 13 H 0.01 0.47 5.07 -2.38 -0.01 0.46 16 14 C -0.15 -7.60 8.36 71.98 0.60 -7.00 16 15 C -0.50 -28.70 8.84 25.60 0.23 -28.48 16 16 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 17 C 0.01 0.32 5.30 84.66 0.45 0.77 16 18 N -0.92 -55.16 11.37 21.45 0.24 -54.91 16 19 Si 0.95 45.77 29.54 68.60 2.03 47.79 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.04 1.60 6.02 -2.38 -0.01 1.59 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 1.13 7.81 -2.39 -0.02 1.11 16 29 H 0.05 2.11 5.72 -2.39 -0.01 2.09 16 30 H 0.08 1.94 7.14 -2.38 -0.02 1.92 16 31 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.04 1.06 7.57 -2.39 -0.02 1.04 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.33 13.64 7.24 -89.69 -0.65 12.99 16 39 H 0.04 2.26 6.20 -2.38 -0.01 2.24 16 40 H 0.06 2.77 4.33 -2.39 -0.01 2.76 16 41 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -61.83 311.01 1.13 -60.70 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.33 Total: 23.43 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 4.07 Total: -27.81 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -5.30 Total: -104.11 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -61.83 1.13 -60.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308960389.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.826 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds