Wall clock time and date at job start Mon Mar 30 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46676 * 2 1 4 4 H 1.08997 * 109.47346 * 54.41538 * 3 2 1 5 5 C 1.52998 * 109.47548 * 294.41265 * 3 2 1 6 6 N 1.46900 * 109.47414 * 185.00098 * 5 3 2 7 7 C 1.48528 * 110.99972 * 52.60710 * 6 5 3 8 8 C 1.54932 * 103.22888 * 159.72282 * 7 6 5 9 9 C 1.54599 * 102.91863 * 322.58470 * 8 7 6 10 10 C 1.47903 * 110.99794 * 170.00096 * 6 5 3 11 11 N 1.46899 * 109.47130 * 174.41436 * 3 2 1 12 12 C 1.46908 * 110.99901 * 282.70967 * 11 3 2 13 13 H 1.09001 * 109.46883 * 32.92295 * 12 11 3 14 14 C 1.52995 * 109.46857 * 272.91645 * 12 11 3 15 15 C 1.50701 * 109.47075 * 152.91811 * 12 11 3 16 16 H 1.07999 * 119.99740 * 5.34248 * 15 12 11 17 17 C 1.37872 * 120.00161 * 185.33938 * 15 12 11 18 18 N 1.31520 * 119.99560 * 6.29038 * 17 15 12 19 19 Si 1.86799 * 120.00277 * 186.28809 * 17 15 12 20 20 H 1.48493 * 109.47137 * 94.99370 * 19 17 15 21 21 H 1.48504 * 109.47258 * 214.99607 * 19 17 15 22 22 H 1.48503 * 109.47153 * 334.99195 * 19 17 15 23 23 H 1.09006 * 109.46769 * 185.43519 * 1 2 3 24 24 H 1.09006 * 109.47569 * 305.42918 * 1 2 3 25 25 H 1.08999 * 109.47651 * 65.43654 * 1 2 3 26 26 H 1.09001 * 109.47189 * 240.00361 * 2 1 3 27 27 H 1.08999 * 109.47402 * 120.00136 * 2 1 3 28 28 H 1.09005 * 109.47137 * 64.99752 * 5 3 2 29 29 H 1.09005 * 109.46946 * 305.00460 * 5 3 2 30 30 H 1.09006 * 110.66317 * 278.15446 * 7 6 5 31 31 H 1.08999 * 110.66789 * 41.28326 * 7 6 5 32 32 H 1.08998 * 110.72716 * 204.23089 * 8 7 6 33 33 H 1.09000 * 110.72674 * 80.93714 * 8 7 6 34 34 H 1.09009 * 110.30605 * 263.03890 * 9 8 7 35 35 H 1.09000 * 110.31209 * 140.87775 * 9 8 7 36 36 H 1.09003 * 109.91870 * 333.50973 * 10 6 5 37 37 H 1.09001 * 109.91855 * 94.60837 * 10 6 5 38 38 H 1.00900 * 111.00420 * 46.66248 * 11 3 2 39 39 H 1.08998 * 109.47246 * 63.72223 * 14 12 11 40 40 H 1.09005 * 109.46783 * 183.71443 * 14 12 11 41 41 H 1.08994 * 109.47552 * 303.71222 * 14 12 11 42 42 H 0.97001 * 119.99873 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9844 0.8357 5 6 1.6478 2.1222 -1.3135 6 7 2.2387 3.4661 -1.3649 7 6 3.7010 3.4147 -1.1100 8 6 4.2122 4.7497 -1.7075 9 6 3.3351 4.9220 -2.9689 10 6 2.0846 4.0617 -2.7100 11 7 3.5027 1.4449 0.1348 12 6 3.9037 1.1875 1.5245 13 1 3.1836 0.5158 1.9919 14 6 3.9452 2.5080 2.2961 15 6 5.2697 0.5514 1.5435 16 1 5.8247 0.4365 0.6241 17 6 5.8111 0.1163 2.7345 18 7 5.0889 0.1422 3.8334 19 14 7.5701 -0.5100 2.7874 20 1 8.4773 0.5954 3.1877 21 1 7.6724 -1.6159 3.7733 22 1 7.9591 -1.0076 1.4434 23 1 -0.3633 -1.0231 0.0973 24 1 -0.3634 0.5957 0.8374 25 1 -0.3634 0.4272 -0.9346 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5621 2.2001 -1.3723 29 1 2.0156 1.5311 -2.1523 30 1 3.9035 3.3697 -0.0399 31 1 4.1515 2.5656 -1.6239 32 1 5.2654 4.6732 -1.9776 33 1 4.0504 5.5716 -1.0101 34 1 3.8658 4.5625 -3.8507 35 1 3.0554 5.9679 -3.0953 36 1 2.0145 3.2732 -3.4594 37 1 1.1898 4.6834 -2.7405 38 1 3.9248 0.7771 -0.4929 39 1 2.9434 2.9354 2.3389 40 1 4.3060 2.3260 3.3085 41 1 4.6157 3.2031 1.7909 42 1 5.4698 -0.1636 4.6714 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308960394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:45 Heat of formation + Delta-G solvation = 6.494881 kcal Electronic energy + Delta-G solvation = -18641.373458 eV Core-core repulsion = 16042.266934 eV Total energy + Delta-G solvation = -2599.106524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.93393 -36.53536 -33.85523 -31.58420 -31.31365 -28.57156 -27.98315 -25.91629 -25.04612 -23.08879 -21.15644 -20.40859 -19.78590 -19.40290 -16.47243 -15.70739 -15.50844 -14.99740 -14.38995 -13.86266 -13.75426 -13.43310 -13.08868 -12.82215 -12.35858 -12.11865 -11.87937 -11.72555 -11.53195 -11.19043 -11.08491 -10.95588 -10.88982 -10.69497 -10.62183 -10.34832 -10.21253 -10.14851 -10.10912 -10.03072 -9.65061 -8.83531 -8.44708 -7.84539 -6.93599 -6.04747 -4.08236 3.29165 3.36505 3.38940 4.40557 4.51328 5.03402 5.12920 5.19880 5.29463 5.30439 5.39026 5.48577 5.66667 5.77338 5.78639 5.82172 5.92033 6.03769 6.07425 6.20541 6.21908 6.31042 6.32970 6.35242 6.43970 6.62827 6.70370 6.78770 6.91071 7.08987 7.17951 7.31789 7.47058 7.55536 7.65874 7.78853 7.91529 8.19276 8.34795 8.67762 9.03475 9.57437 11.03786 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.007554 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.066172 B = 3705.805259 C = 4554.856471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 C 0.086 3.914 4 H 0.079 0.921 5 C 0.061 3.939 6 N -0.514 5.514 7 C 0.063 3.937 8 C -0.141 4.141 9 C -0.129 4.129 10 C 0.034 3.966 11 N -0.676 5.676 12 C 0.207 3.793 13 H 0.011 0.989 14 C -0.119 4.119 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.275 1.275 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.126 0.874 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.327 0.673 39 H 0.010 0.990 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.061 4.477 -10.140 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C -0.025 4.025 4 H 0.097 0.903 5 C -0.068 4.068 6 N -0.238 5.238 7 C -0.064 4.064 8 C -0.180 4.180 9 C -0.168 4.168 10 C -0.095 4.095 11 N -0.305 5.305 12 C 0.100 3.900 13 H 0.029 0.971 14 C -0.177 4.177 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.200 1.200 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.144 0.856 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.029 0.971 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.270 5.415 -9.468 12.581 hybrid contribution 1.106 -1.881 -0.504 2.239 sum -5.164 3.534 -9.971 11.772 Atomic orbital electron populations 1.21742 0.96399 1.00914 1.01310 1.22249 0.95730 0.98926 1.02327 1.21607 0.90889 0.93117 0.96889 0.90257 1.22315 0.98579 0.88985 0.96897 1.64778 1.15056 1.19751 1.24229 1.23719 0.85210 0.92787 1.04653 1.22787 0.98440 1.00368 0.96372 1.22363 0.96322 0.99549 0.98531 1.22863 0.98164 0.97457 0.90979 1.61677 1.04573 1.53995 1.10239 1.19127 0.95139 0.92709 0.83025 0.97095 1.21667 0.96943 0.97681 1.01433 1.21263 1.01938 1.38908 0.93672 0.92362 1.24907 0.97601 0.95512 0.95787 1.69959 1.35884 1.47369 0.99483 0.86594 0.85304 0.78394 0.77750 1.20686 1.21413 1.19976 0.93485 0.92780 0.93180 0.92732 0.90963 0.91536 0.95762 0.85645 0.93855 0.91937 0.91676 0.92364 0.92013 0.94845 0.91500 0.85544 0.97115 0.91764 0.94741 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.55 37.16 0.35 -1.62 16 2 C -0.15 -2.48 5.39 -26.73 -0.14 -2.63 16 3 C 0.09 1.50 2.12 -67.71 -0.14 1.36 16 4 H 0.08 1.53 7.35 -51.93 -0.38 1.15 16 5 C 0.06 0.95 4.58 -3.83 -0.02 0.93 16 6 N -0.51 -8.27 5.40 -230.46 -1.24 -9.52 16 7 C 0.06 1.08 4.58 -1.90 -0.01 1.07 16 8 C -0.14 -2.07 7.06 -24.87 -0.18 -2.24 16 9 C -0.13 -1.65 6.93 -25.38 -0.18 -1.83 16 10 C 0.03 0.46 6.69 -2.76 -0.02 0.44 16 11 N -0.68 -13.37 1.71 -100.95 -0.17 -13.54 16 12 C 0.21 4.98 2.26 -68.86 -0.16 4.82 16 13 H 0.01 0.30 6.51 -51.93 -0.34 -0.04 16 14 C -0.12 -2.84 8.55 37.15 0.32 -2.52 16 15 C -0.52 -13.75 8.49 -34.44 -0.29 -14.04 16 16 H 0.06 1.53 7.65 -52.49 -0.40 1.13 16 17 C 0.06 1.74 5.22 -17.82 -0.09 1.65 16 18 N -0.89 -25.20 11.99 55.43 0.66 -24.54 16 19 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.61 6.97 -51.93 -0.36 0.25 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.37 6.82 -51.93 -0.35 1.02 16 28 H 0.07 0.95 6.96 -51.93 -0.36 0.59 16 29 H 0.02 0.37 7.81 -51.93 -0.41 -0.03 16 30 H 0.13 2.49 4.45 -51.93 -0.23 2.26 16 31 H 0.04 0.77 7.01 -51.93 -0.36 0.41 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.44 7.57 -51.93 -0.39 0.05 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.33 6.56 7.77 -39.29 -0.31 6.25 16 39 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 40 H 0.06 1.69 6.68 -51.93 -0.35 1.34 16 41 H 0.03 0.79 7.08 -51.93 -0.37 0.43 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 313.04 15.07 4.72 4.72 Total: -1.00 -26.70 313.04 -9.13 -35.83 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.52 Total: 5.60 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.55 Total: -14.61 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.75 Total: -47.60 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.70 -9.13 -35.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308960394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.326 kcal (2) G-P(sol) polarization free energy of solvation -26.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds