Wall clock time and date at job start Mon Mar 30 2020 03:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46676 * 2 1 4 4 H 1.08997 * 109.47346 * 54.41538 * 3 2 1 5 5 C 1.52998 * 109.47548 * 294.41265 * 3 2 1 6 6 N 1.46900 * 109.47414 * 185.00098 * 5 3 2 7 7 C 1.48528 * 110.99972 * 52.60710 * 6 5 3 8 8 C 1.54932 * 103.22888 * 159.72282 * 7 6 5 9 9 C 1.54599 * 102.91863 * 322.58470 * 8 7 6 10 10 C 1.47903 * 110.99794 * 170.00096 * 6 5 3 11 11 N 1.46899 * 109.47130 * 174.41436 * 3 2 1 12 12 C 1.46908 * 110.99901 * 282.70967 * 11 3 2 13 13 H 1.09001 * 109.46883 * 32.92295 * 12 11 3 14 14 C 1.52995 * 109.46857 * 272.91645 * 12 11 3 15 15 C 1.50701 * 109.47075 * 152.91811 * 12 11 3 16 16 H 1.07999 * 119.99740 * 5.34248 * 15 12 11 17 17 C 1.37872 * 120.00161 * 185.33938 * 15 12 11 18 18 N 1.31520 * 119.99560 * 6.29038 * 17 15 12 19 19 Si 1.86799 * 120.00277 * 186.28809 * 17 15 12 20 20 H 1.48493 * 109.47137 * 94.99370 * 19 17 15 21 21 H 1.48504 * 109.47258 * 214.99607 * 19 17 15 22 22 H 1.48503 * 109.47153 * 334.99195 * 19 17 15 23 23 H 1.09006 * 109.46769 * 185.43519 * 1 2 3 24 24 H 1.09006 * 109.47569 * 305.42918 * 1 2 3 25 25 H 1.08999 * 109.47651 * 65.43654 * 1 2 3 26 26 H 1.09001 * 109.47189 * 240.00361 * 2 1 3 27 27 H 1.08999 * 109.47402 * 120.00136 * 2 1 3 28 28 H 1.09005 * 109.47137 * 64.99752 * 5 3 2 29 29 H 1.09005 * 109.46946 * 305.00460 * 5 3 2 30 30 H 1.09006 * 110.66317 * 278.15446 * 7 6 5 31 31 H 1.08999 * 110.66789 * 41.28326 * 7 6 5 32 32 H 1.08998 * 110.72716 * 204.23089 * 8 7 6 33 33 H 1.09000 * 110.72674 * 80.93714 * 8 7 6 34 34 H 1.09009 * 110.30605 * 263.03890 * 9 8 7 35 35 H 1.09000 * 110.31209 * 140.87775 * 9 8 7 36 36 H 1.09003 * 109.91870 * 333.50973 * 10 6 5 37 37 H 1.09001 * 109.91855 * 94.60837 * 10 6 5 38 38 H 1.00900 * 111.00420 * 46.66248 * 11 3 2 39 39 H 1.08998 * 109.47246 * 63.72223 * 14 12 11 40 40 H 1.09005 * 109.46783 * 183.71443 * 14 12 11 41 41 H 1.08994 * 109.47552 * 303.71222 * 14 12 11 42 42 H 0.97001 * 119.99873 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5972 1.9844 0.8357 5 6 1.6478 2.1222 -1.3135 6 7 2.2387 3.4661 -1.3649 7 6 3.7010 3.4147 -1.1100 8 6 4.2122 4.7497 -1.7075 9 6 3.3351 4.9220 -2.9689 10 6 2.0846 4.0617 -2.7100 11 7 3.5027 1.4449 0.1348 12 6 3.9037 1.1875 1.5245 13 1 3.1836 0.5158 1.9919 14 6 3.9452 2.5080 2.2961 15 6 5.2697 0.5514 1.5435 16 1 5.8247 0.4365 0.6241 17 6 5.8111 0.1163 2.7345 18 7 5.0889 0.1422 3.8334 19 14 7.5701 -0.5100 2.7874 20 1 8.4773 0.5954 3.1877 21 1 7.6724 -1.6159 3.7733 22 1 7.9591 -1.0076 1.4434 23 1 -0.3633 -1.0231 0.0973 24 1 -0.3634 0.5957 0.8374 25 1 -0.3634 0.4272 -0.9346 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5621 2.2001 -1.3723 29 1 2.0156 1.5311 -2.1523 30 1 3.9035 3.3697 -0.0399 31 1 4.1515 2.5656 -1.6239 32 1 5.2654 4.6732 -1.9776 33 1 4.0504 5.5716 -1.0101 34 1 3.8658 4.5625 -3.8507 35 1 3.0554 5.9679 -3.0953 36 1 2.0145 3.2732 -3.4594 37 1 1.1898 4.6834 -2.7405 38 1 3.9248 0.7771 -0.4929 39 1 2.9434 2.9354 2.3389 40 1 4.3060 2.3260 3.3085 41 1 4.6157 3.2031 1.7909 42 1 5.4698 -0.1636 4.6714 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308960394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:45 Heat of formation + Delta-G solvation = -9.173403 kcal Electronic energy + Delta-G solvation = -18642.052886 eV Core-core repulsion = 16042.266934 eV Total energy + Delta-G solvation = -2599.785952 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26102 -37.98685 -35.62721 -33.41017 -32.50166 -30.16020 -29.27980 -27.47508 -26.95722 -24.38226 -22.71280 -21.51761 -21.18171 -21.06600 -18.42432 -17.15088 -16.78925 -16.64286 -15.95026 -15.44171 -15.21949 -14.74729 -14.37353 -14.28987 -13.91281 -13.57697 -13.44417 -13.13169 -12.97076 -12.84374 -12.63495 -12.48271 -12.33240 -12.26217 -12.07529 -12.00424 -11.88724 -11.70349 -11.48473 -11.24814 -11.18640 -10.85347 -10.53460 -9.08851 -8.58422 -8.13761 -6.23839 1.40740 1.42824 1.51960 2.42127 3.18162 3.29613 3.66063 3.88479 4.01660 4.11777 4.17911 4.27713 4.38396 4.51543 4.61221 4.64526 4.81075 4.84168 4.84333 4.95684 5.00776 5.03929 5.09228 5.12606 5.15275 5.17874 5.23384 5.29809 5.35417 5.43572 5.50244 5.52776 5.69674 5.83796 5.93816 6.19731 6.29154 6.40892 6.49858 6.83354 7.05326 7.46224 8.94448 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021784 B = 0.007554 C = 0.006146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.066172 B = 3705.805259 C = 4554.856471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.146 4.146 3 C 0.089 3.911 4 H 0.057 0.943 5 C 0.070 3.930 6 N -0.529 5.529 7 C 0.066 3.934 8 C -0.140 4.140 9 C -0.123 4.123 10 C 0.033 3.967 11 N -0.663 5.663 12 C 0.218 3.782 13 H -0.024 1.024 14 C -0.103 4.103 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.015 3.985 18 N -0.920 5.920 19 Si 0.955 3.045 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.267 1.267 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.036 0.964 28 H 0.085 0.915 29 H 0.031 0.969 30 H 0.093 0.907 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.079 0.921 38 H 0.326 0.674 39 H 0.018 0.982 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 4.941 -12.236 14.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.186 4.186 3 C -0.022 4.022 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.253 5.253 7 C -0.062 4.062 8 C -0.179 4.179 9 C -0.161 4.161 10 C -0.095 4.095 11 N -0.292 5.292 12 C 0.109 3.891 13 H -0.006 1.006 14 C -0.162 4.162 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.184 4.184 18 N -0.559 5.559 19 Si 0.781 3.219 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.191 1.191 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.143 0.857 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.540 5.887 -11.587 14.549 hybrid contribution 1.136 -2.005 0.136 2.309 sum -5.404 3.881 -11.451 13.243 Atomic orbital electron populations 1.21690 0.93896 1.01851 1.02251 1.22136 0.97924 0.97602 1.00938 1.21614 0.89072 0.93945 0.97580 0.92479 1.22231 0.99570 0.88750 0.95287 1.64749 1.14228 1.20000 1.26319 1.23441 0.86205 0.93872 1.02680 1.22734 0.99184 0.98665 0.97274 1.22348 0.95472 1.00519 0.97737 1.22938 0.99134 0.97844 0.89600 1.61669 1.06422 1.53471 1.07643 1.18844 0.93471 0.91685 0.85065 1.00594 1.21461 0.97247 0.97745 0.99710 1.21587 1.02903 1.38772 0.93679 0.92381 1.25675 1.01318 0.95890 0.95511 1.70085 1.37512 1.48382 0.99966 0.85598 0.80630 0.77785 0.77924 1.20337 1.21270 1.19141 0.92349 0.93250 0.91029 0.91807 0.94565 0.89665 0.95112 0.88875 0.94939 0.91403 0.92098 0.91134 0.90371 0.94007 0.90252 0.85694 0.96311 0.94536 0.94429 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.55 71.98 0.69 -2.87 16 2 C -0.15 -4.74 5.39 30.59 0.17 -4.57 16 3 C 0.09 3.08 2.12 44.92 0.10 3.18 16 4 H 0.06 2.25 7.35 -2.39 -0.02 2.23 16 5 C 0.07 2.04 4.58 86.30 0.40 2.44 16 6 N -0.53 -16.09 5.40 -883.03 -4.76 -20.85 16 7 C 0.07 2.19 4.58 86.65 0.40 2.59 16 8 C -0.14 -3.88 7.06 31.80 0.22 -3.65 16 9 C -0.12 -2.76 6.93 31.47 0.22 -2.54 16 10 C 0.03 0.79 6.69 86.44 0.58 1.37 16 11 N -0.66 -26.71 1.71 -473.30 -0.81 -27.52 16 12 C 0.22 10.82 2.26 44.17 0.10 10.92 16 13 H -0.02 -1.32 6.51 -2.39 -0.02 -1.34 16 14 C -0.10 -5.10 8.55 71.98 0.62 -4.48 16 15 C -0.53 -28.65 8.49 25.60 0.22 -28.43 16 16 H 0.06 3.07 7.65 -2.91 -0.02 3.05 16 17 C 0.02 0.84 5.22 84.65 0.44 1.28 16 18 N -0.92 -53.55 11.99 21.45 0.26 -53.29 16 19 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 24 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 25 H 0.07 1.54 6.97 -2.39 -0.02 1.52 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.04 1.42 6.82 -2.39 -0.02 1.41 16 28 H 0.09 2.19 6.96 -2.38 -0.02 2.17 16 29 H 0.03 0.87 7.81 -2.38 -0.02 0.85 16 30 H 0.09 3.73 4.45 -2.38 -0.01 3.72 16 31 H 0.03 1.13 7.01 -2.39 -0.02 1.12 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 0.95 7.57 -2.39 -0.02 0.94 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.33 13.20 7.77 -89.69 -0.70 12.50 16 39 H 0.02 0.84 7.56 -2.39 -0.02 0.82 16 40 H 0.04 1.97 6.68 -2.38 -0.02 1.96 16 41 H 0.04 1.78 7.08 -2.39 -0.02 1.76 16 42 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -57.97 313.04 1.12 -56.85 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.28 Total: 24.00 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.14 Total: -24.77 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.32 Total: -101.66 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -57.97 1.12 -56.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308960394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.673 kcal (2) G-P(sol) polarization free energy of solvation -57.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds