Wall clock time and date at job start Mon Mar 30 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47201 * 2 1 4 4 N 1.46902 * 109.47626 * 180.02562 * 3 2 1 5 5 C 1.48564 * 110.99732 * 290.12990 * 4 3 2 6 6 C 1.54381 * 104.59191 * 200.95746 * 5 4 3 7 7 C 1.54269 * 105.06032 * 23.84728 * 6 5 4 8 8 H 1.09003 * 110.32190 * 241.00254 * 7 6 5 9 9 C 1.53000 * 110.31922 * 118.89972 * 7 6 5 10 10 N 1.46900 * 109.47300 * 67.82841 * 9 7 6 11 11 C 1.46903 * 111.00000 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47052 * 34.99701 * 11 10 9 13 13 C 1.53000 * 109.47096 * 275.00251 * 11 10 9 14 14 C 1.50694 * 109.47066 * 155.00016 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.48721 * 111.01837 * 174.61667 * 4 3 2 23 23 H 1.09001 * 109.47354 * 299.99869 * 1 2 3 24 24 H 1.08995 * 109.47105 * 60.00225 * 1 2 3 25 25 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47124 * 239.99809 * 2 1 3 27 27 H 1.09004 * 109.47324 * 119.99983 * 2 1 3 28 28 H 1.09001 * 109.47559 * 60.00095 * 3 2 1 29 29 H 1.09004 * 109.46968 * 300.00201 * 3 2 1 30 30 H 1.08990 * 110.41520 * 82.17650 * 5 4 3 31 31 H 1.08996 * 110.51103 * 319.78027 * 5 4 3 32 32 H 1.09004 * 110.32341 * 264.95526 * 6 5 4 33 33 H 1.08999 * 110.41225 * 142.79139 * 6 5 4 34 34 H 1.09002 * 109.47131 * 307.82542 * 9 7 6 35 35 H 1.09001 * 109.46935 * 187.82694 * 9 7 6 36 36 H 1.00896 * 110.99858 * 303.94976 * 10 9 7 37 37 H 1.08998 * 109.47089 * 59.99840 * 13 11 10 38 38 H 1.08995 * 109.47131 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47106 * 299.99893 * 13 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 41 41 H 1.08990 * 110.38826 * 40.24303 * 22 4 3 42 42 H 1.09005 * 110.50374 * 277.75268 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0419 0.9651 1.3013 6 6 5.4838 1.5140 1.3563 7 6 5.4833 2.7366 0.4155 8 1 6.1894 2.5861 -0.4012 9 6 5.8352 4.0060 1.1938 10 7 7.2358 3.9395 1.6317 11 6 7.6101 5.1448 2.3835 12 1 6.7562 5.4887 2.9672 13 6 8.0360 6.2432 1.4072 14 6 8.7550 4.8240 3.3093 15 1 9.1636 3.8246 3.3368 16 6 9.2804 5.8062 4.1220 17 7 8.7826 7.0230 4.0889 18 14 10.6992 5.4083 5.2701 19 1 10.1645 4.9577 6.5802 20 1 11.5288 4.3291 4.6764 21 1 11.5323 6.6218 5.4664 22 6 4.0422 2.8247 -0.1309 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 4.0484 -0.1244 1.3330 31 1 3.4513 1.3650 2.1255 32 1 6.1887 0.7626 1.0003 33 1 5.7364 1.8180 2.3721 34 1 5.1856 4.0897 2.0651 35 1 5.6961 4.8759 0.5520 36 1 7.4056 3.1067 2.1753 37 1 7.2078 6.4752 0.7376 38 1 8.3141 7.1373 1.9650 39 1 8.8898 5.8993 0.8234 40 1 9.1520 7.7138 4.6610 41 1 3.4507 3.5178 0.4671 42 1 4.0501 3.1340 -1.1761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309026598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:19 Heat of formation + Delta-G solvation = -15.246739 kcal Electronic energy + Delta-G solvation = -17492.461583 eV Core-core repulsion = 14892.412271 eV Total energy + Delta-G solvation = -2600.049312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.19305 -36.13671 -34.51937 -32.61974 -30.85769 -29.32482 -27.89808 -25.62737 -25.14474 -23.26864 -22.04017 -20.79434 -19.74066 -19.31936 -16.65036 -16.14067 -15.61008 -15.16145 -14.77437 -14.40570 -13.88123 -13.46037 -13.45398 -13.09698 -12.67302 -12.41760 -12.19893 -12.10555 -11.81658 -11.46548 -11.28113 -11.07270 -11.01685 -10.89518 -10.77100 -10.67113 -10.47854 -10.23907 -10.14385 -10.06416 -9.78089 -8.80832 -8.50958 -8.46806 -7.23762 -6.02228 -4.08651 3.29353 3.36066 3.40200 3.94461 4.40362 4.64989 4.76810 4.85398 5.00708 5.09768 5.22467 5.28590 5.31868 5.36304 5.46580 5.53339 5.60724 5.69239 5.80746 5.81391 5.85855 5.94992 5.99194 6.06581 6.12420 6.18469 6.25672 6.49675 6.62571 6.87996 6.91285 7.03389 7.15923 7.25833 7.52829 7.78943 7.91649 8.29089 8.41662 8.69906 9.02705 9.57349 11.04152 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046961 B = 0.003993 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.102114 B = 7009.998864 C = 7263.279614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.043 3.957 4 N -0.513 5.513 5 C 0.033 3.967 6 C -0.120 4.120 7 C -0.088 4.088 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.688 5.688 11 C 0.211 3.789 12 H -0.001 1.001 13 C -0.124 4.124 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.282 1.282 20 H -0.273 1.273 21 H -0.286 1.286 22 C 0.038 3.962 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.016 0.984 35 H 0.063 0.937 36 H 0.329 0.671 37 H 0.003 0.997 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.043 0.957 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.120 -10.842 -6.757 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.085 4.085 4 N -0.237 5.237 5 C -0.095 4.095 6 C -0.158 4.158 7 C -0.107 4.107 8 H 0.104 0.896 9 C -0.062 4.062 10 N -0.319 5.319 11 C 0.104 3.896 12 H 0.016 0.984 13 C -0.183 4.183 14 C -0.557 4.557 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.208 1.208 20 H -0.198 1.198 21 H -0.212 1.212 22 C -0.090 4.090 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.022 0.978 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.684 -10.748 -7.714 18.328 hybrid contribution -0.054 0.325 2.186 2.211 sum -12.738 -10.423 -5.528 17.363 Atomic orbital electron populations 1.21745 0.95811 1.01633 1.01730 1.21478 0.95173 0.96442 1.02605 1.22311 0.88297 0.97173 1.00763 1.65411 1.07314 1.19777 1.31175 1.23124 0.95813 1.00344 0.90199 1.22365 0.95666 0.97630 1.00135 1.21932 0.95393 0.94957 0.98418 0.89610 1.21942 0.91054 0.96104 0.97055 1.60718 1.17425 1.06708 1.47095 1.19094 0.94698 0.86042 0.89805 0.98363 1.21710 0.97491 1.01396 0.97654 1.21278 1.17055 0.96548 1.20792 0.92238 1.24932 0.97075 0.94975 0.97081 1.69903 1.41938 1.01851 1.39243 0.86524 0.82256 0.77871 0.80909 1.20785 1.19806 1.21194 1.23168 0.95440 0.89316 1.01126 0.92912 0.92708 0.92630 0.91222 0.92117 0.94815 0.90965 0.90517 0.94147 0.91042 0.91153 0.96639 0.91869 0.85294 0.97753 0.90168 0.94948 0.92948 0.93847 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.08 5.99 -26.74 -0.16 -1.24 16 3 C 0.04 0.45 4.81 -3.83 -0.02 0.43 16 4 N -0.51 -6.37 5.37 -229.84 -1.23 -7.60 16 5 C 0.03 0.41 5.74 -2.18 -0.01 0.39 16 6 C -0.12 -1.65 6.15 -25.34 -0.16 -1.81 16 7 C -0.09 -1.30 3.30 -89.24 -0.29 -1.60 16 8 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 9 C 0.07 1.25 4.64 -3.82 -0.02 1.23 16 10 N -0.69 -14.86 6.30 -107.95 -0.68 -15.54 16 11 C 0.21 5.44 2.60 -68.87 -0.18 5.26 16 12 H 0.00 -0.04 7.80 -51.92 -0.41 -0.44 16 13 C -0.12 -3.15 9.19 37.16 0.34 -2.81 16 14 C -0.52 -14.38 8.59 -34.44 -0.30 -14.68 16 15 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 18 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.04 0.50 6.05 -2.09 -0.01 0.48 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.56 7.26 -51.93 -0.38 0.19 16 28 H 0.03 0.36 7.89 -51.93 -0.41 -0.05 16 29 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 31 H 0.04 0.50 7.83 -51.93 -0.41 0.10 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.04 7.03 -51.93 -0.37 0.67 16 34 H 0.02 0.29 8.06 -51.93 -0.42 -0.12 16 35 H 0.06 1.18 7.43 -51.93 -0.39 0.79 16 36 H 0.33 6.92 7.02 -39.29 -0.28 6.65 16 37 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.04 0.58 7.72 -51.93 -0.40 0.18 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 324.64 15.07 4.89 4.89 Total: -1.00 -28.43 324.64 -9.84 -38.27 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.89 Total: 2.19 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.53 Total: -13.49 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -1.29 Total: -48.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.43 -9.84 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds