Wall clock time and date at job start Mon Mar 30 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47201 * 2 1 4 4 N 1.46902 * 109.47626 * 180.02562 * 3 2 1 5 5 C 1.48564 * 110.99732 * 290.12990 * 4 3 2 6 6 C 1.54381 * 104.59191 * 200.95746 * 5 4 3 7 7 C 1.54269 * 105.06032 * 23.84728 * 6 5 4 8 8 H 1.09003 * 110.32190 * 241.00254 * 7 6 5 9 9 C 1.53000 * 110.31922 * 118.89972 * 7 6 5 10 10 N 1.46900 * 109.47300 * 67.82841 * 9 7 6 11 11 C 1.46903 * 111.00000 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.47052 * 34.99701 * 11 10 9 13 13 C 1.53000 * 109.47096 * 275.00251 * 11 10 9 14 14 C 1.50694 * 109.47066 * 155.00016 * 11 10 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 11 10 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.48721 * 111.01837 * 174.61667 * 4 3 2 23 23 H 1.09001 * 109.47354 * 299.99869 * 1 2 3 24 24 H 1.08995 * 109.47105 * 60.00225 * 1 2 3 25 25 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47124 * 239.99809 * 2 1 3 27 27 H 1.09004 * 109.47324 * 119.99983 * 2 1 3 28 28 H 1.09001 * 109.47559 * 60.00095 * 3 2 1 29 29 H 1.09004 * 109.46968 * 300.00201 * 3 2 1 30 30 H 1.08990 * 110.41520 * 82.17650 * 5 4 3 31 31 H 1.08996 * 110.51103 * 319.78027 * 5 4 3 32 32 H 1.09004 * 110.32341 * 264.95526 * 6 5 4 33 33 H 1.08999 * 110.41225 * 142.79139 * 6 5 4 34 34 H 1.09002 * 109.47131 * 307.82542 * 9 7 6 35 35 H 1.09001 * 109.46935 * 187.82694 * 9 7 6 36 36 H 1.00896 * 110.99858 * 303.94976 * 10 9 7 37 37 H 1.08998 * 109.47089 * 59.99840 * 13 11 10 38 38 H 1.08995 * 109.47131 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47106 * 299.99893 * 13 11 10 40 40 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 41 41 H 1.08990 * 110.38826 * 40.24303 * 22 4 3 42 42 H 1.09005 * 110.50374 * 277.75268 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0419 0.9651 1.3013 6 6 5.4838 1.5140 1.3563 7 6 5.4833 2.7366 0.4155 8 1 6.1894 2.5861 -0.4012 9 6 5.8352 4.0060 1.1938 10 7 7.2358 3.9395 1.6317 11 6 7.6101 5.1448 2.3835 12 1 6.7562 5.4887 2.9672 13 6 8.0360 6.2432 1.4072 14 6 8.7550 4.8240 3.3093 15 1 9.1636 3.8246 3.3368 16 6 9.2804 5.8062 4.1220 17 7 8.7826 7.0230 4.0889 18 14 10.6992 5.4083 5.2701 19 1 10.1645 4.9577 6.5802 20 1 11.5288 4.3291 4.6764 21 1 11.5323 6.6218 5.4664 22 6 4.0422 2.8247 -0.1309 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 4.0484 -0.1244 1.3330 31 1 3.4513 1.3650 2.1255 32 1 6.1887 0.7626 1.0003 33 1 5.7364 1.8180 2.3721 34 1 5.1856 4.0897 2.0651 35 1 5.6961 4.8759 0.5520 36 1 7.4056 3.1067 2.1753 37 1 7.2078 6.4752 0.7376 38 1 8.3141 7.1373 1.9650 39 1 8.8898 5.8993 0.8234 40 1 9.1520 7.7138 4.6610 41 1 3.4507 3.5178 0.4671 42 1 4.0501 3.1340 -1.1761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309026598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:19 Heat of formation + Delta-G solvation = -33.561359 kcal Electronic energy + Delta-G solvation = -17493.255765 eV Core-core repulsion = 14892.412271 eV Total energy + Delta-G solvation = -2600.843493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28515 -37.76503 -35.73317 -34.31314 -32.22837 -30.52905 -29.47804 -27.38632 -26.49678 -24.69143 -22.93245 -21.84776 -21.57933 -20.54504 -18.58959 -17.30313 -16.96990 -16.54469 -16.08071 -15.58985 -15.57338 -14.86262 -14.62365 -14.33029 -13.94509 -13.73421 -13.65671 -13.28820 -13.04083 -12.83198 -12.73407 -12.64114 -12.40101 -12.23706 -12.20331 -12.12718 -11.88278 -11.75593 -11.47594 -11.46206 -11.32547 -10.88412 -10.58515 -9.48891 -9.06866 -8.14724 -6.29327 1.41408 1.42793 1.53719 2.40671 2.97556 3.13758 3.50773 3.71578 3.86577 4.04729 4.09991 4.20963 4.29369 4.46601 4.51362 4.57377 4.62385 4.69879 4.73030 4.73937 4.81179 4.84911 4.91388 4.98238 5.06639 5.09843 5.19459 5.20655 5.23697 5.30796 5.34900 5.42446 5.48785 5.66250 5.84346 5.86182 6.09702 6.20969 6.46468 6.76741 6.99563 7.41391 8.91144 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046961 B = 0.003993 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.102114 B = 7009.998864 C = 7263.279614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.042 3.958 4 N -0.517 5.517 5 C 0.038 3.962 6 C -0.119 4.119 7 C -0.080 4.080 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.685 5.685 11 C 0.215 3.785 12 H -0.034 1.034 13 C -0.114 4.114 14 C -0.539 4.539 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.964 3.036 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.283 1.283 22 C 0.042 3.958 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.007 0.993 35 H 0.058 0.942 36 H 0.333 0.667 37 H 0.021 0.979 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.040 0.960 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.456 -12.188 -7.054 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.086 4.086 4 N -0.241 5.241 5 C -0.090 4.090 6 C -0.157 4.157 7 C -0.100 4.100 8 H 0.100 0.900 9 C -0.056 4.056 10 N -0.316 5.316 11 C 0.106 3.894 12 H -0.017 1.017 13 C -0.172 4.172 14 C -0.578 4.578 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.789 3.211 19 H -0.201 1.201 20 H -0.191 1.191 21 H -0.208 1.208 22 C -0.086 4.086 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.035 -12.111 -8.023 19.519 hybrid contribution 0.001 0.750 2.252 2.373 sum -13.034 -11.361 -5.771 18.228 Atomic orbital electron populations 1.21723 0.94586 1.02344 1.01976 1.21442 0.96197 0.95245 1.02371 1.22391 0.87015 0.98305 1.00924 1.65447 1.08608 1.18954 1.31087 1.23101 0.94580 1.01126 0.90201 1.22339 0.97042 0.97284 0.99036 1.21808 0.96571 0.93588 0.98000 0.90000 1.21948 0.88915 0.97884 0.96865 1.60643 1.19721 1.05310 1.45941 1.18912 0.93134 0.87611 0.89710 1.01675 1.21545 0.97923 1.00300 0.97432 1.21604 1.17787 0.96736 1.21633 0.92194 1.25770 0.99600 0.94778 0.98583 1.70031 1.43148 1.02696 1.39937 0.85461 0.78981 0.77775 0.78840 1.20050 1.19133 1.20810 1.23104 0.94025 0.89969 1.01501 0.92911 0.92237 0.91715 0.91428 0.92339 0.95119 0.90325 0.89075 0.94369 0.90380 0.92441 0.97517 0.92399 0.84943 0.96006 0.92461 0.95232 0.92805 0.94162 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.11 -1.85 5.99 30.59 0.18 -1.67 16 3 C 0.04 0.80 4.81 86.30 0.42 1.22 16 4 N -0.52 -11.91 5.37 -881.08 -4.73 -16.64 16 5 C 0.04 0.87 5.74 86.45 0.50 1.36 16 6 C -0.12 -3.15 6.15 31.49 0.19 -2.96 16 7 C -0.08 -2.32 3.30 -9.90 -0.03 -2.35 16 8 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 9 C 0.07 2.68 4.64 86.30 0.40 3.08 16 10 N -0.68 -29.67 6.30 -495.44 -3.12 -32.79 16 11 C 0.21 11.25 2.60 44.17 0.11 11.36 16 12 H -0.03 -1.99 7.80 -2.38 -0.02 -2.01 16 13 C -0.11 -5.83 9.19 71.98 0.66 -5.17 16 14 C -0.54 -30.12 8.59 25.60 0.22 -29.90 16 15 H 0.06 3.26 7.62 -2.91 -0.02 3.24 16 16 C 0.01 0.66 5.30 84.66 0.45 1.11 16 17 N -0.92 -53.61 11.32 21.45 0.24 -53.37 16 18 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 C 0.04 1.06 6.05 86.42 0.52 1.58 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 0.97 7.26 -2.39 -0.02 0.95 16 28 H 0.03 0.61 7.89 -2.39 -0.02 0.60 16 29 H 0.08 1.41 8.13 -2.39 -0.02 1.39 16 30 H 0.09 1.85 7.76 -2.39 -0.02 1.83 16 31 H 0.04 0.90 7.83 -2.39 -0.02 0.88 16 32 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.06 1.67 7.03 -2.39 -0.02 1.65 16 34 H 0.01 0.26 8.06 -2.39 -0.02 0.24 16 35 H 0.06 2.15 7.43 -2.39 -0.02 2.13 16 36 H 0.33 14.01 7.02 -89.70 -0.63 13.38 16 37 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 38 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.04 1.03 7.72 -2.39 -0.02 1.01 16 42 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -59.72 324.64 -0.92 -60.64 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.33 Total: 19.96 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 4.34 Total: -23.54 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -7.61 Total: -102.81 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -59.72 -0.92 -60.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.081 kcal (2) G-P(sol) polarization free energy of solvation -59.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds