Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99965 * 3 2 1 6 6 H 1.07997 * 120.00044 * 239.99782 * 5 3 2 7 7 C 1.37874 * 119.99795 * 60.00183 * 5 3 2 8 8 N 1.31514 * 120.00136 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99956 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47276 * 90.00176 * 9 7 5 11 11 H 1.48508 * 109.47437 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47553 * 330.00304 * 9 7 5 13 13 N 1.46904 * 109.46673 * 65.00092 * 3 2 1 14 14 C 1.48533 * 111.00030 * 62.60421 * 13 3 2 15 15 C 1.54936 * 103.22626 * 159.71860 * 14 13 3 16 16 H 1.08994 * 110.72572 * 80.94128 * 15 14 13 17 17 C 1.53000 * 110.72236 * 204.22989 * 15 14 13 18 18 C 1.54603 * 102.91993 * 322.58402 * 15 14 13 19 19 C 1.52998 * 110.30838 * 263.03878 * 18 15 14 20 20 C 1.53002 * 110.30487 * 140.87850 * 18 15 14 21 21 N 1.46896 * 109.47048 * 182.83105 * 20 18 15 22 22 C 1.47907 * 110.99410 * 179.97438 * 13 3 2 23 23 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 27 27 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 28 28 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.66870 * 278.15417 * 14 13 3 30 30 H 1.09002 * 110.66781 * 41.28224 * 14 13 3 31 31 H 1.09000 * 109.47012 * 173.50235 * 17 15 14 32 32 H 1.08997 * 109.46914 * 293.50195 * 17 15 14 33 33 H 1.08998 * 109.47608 * 53.49928 * 17 15 14 34 34 H 1.09001 * 109.47134 * 177.16987 * 19 18 15 35 35 H 1.08998 * 109.47705 * 297.17155 * 19 18 15 36 36 H 1.08998 * 109.46983 * 57.17671 * 19 18 15 37 37 H 1.08999 * 109.46724 * 302.82664 * 20 18 15 38 38 H 1.08999 * 109.47631 * 62.82711 * 20 18 15 39 39 H 1.00897 * 111.00282 * 179.97438 * 21 20 18 40 40 H 1.00900 * 110.99987 * 303.95239 * 21 20 18 41 41 H 1.08997 * 109.91787 * 333.51106 * 22 13 3 42 42 H 1.08999 * 109.91462 * 94.60947 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0737 -0.6902 13 7 1.6513 2.0992 1.2553 14 6 2.2772 1.4280 2.4232 15 6 2.2099 2.5088 3.5313 16 1 1.2206 2.5317 3.9882 17 6 3.2905 2.2692 4.5876 18 6 2.4844 3.8173 2.7550 19 6 3.9602 4.2038 2.8707 20 6 1.5960 4.9450 3.2843 21 7 1.8224 6.1602 2.4907 22 6 2.1290 3.4986 1.2913 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8292 -0.0602 -2.9504 29 1 1.7061 0.5455 2.7113 30 1 3.3122 1.1637 2.2059 31 1 3.3006 3.1008 5.2921 32 1 3.0775 1.3432 5.1216 33 1 4.2631 2.1927 4.1017 34 1 4.1490 5.0990 2.2782 35 1 4.2034 4.4012 3.9147 36 1 4.5798 3.3866 2.5016 37 1 0.5496 4.6500 3.2065 38 1 1.8415 5.1416 4.3279 39 1 1.2465 6.9201 2.8206 40 1 2.7980 6.4177 2.4940 41 1 3.0130 3.6055 0.6626 42 1 1.3427 4.1684 0.9431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309063253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = -9.229276 kcal Electronic energy + Delta-G solvation = -19071.279258 eV Core-core repulsion = 16471.490883 eV Total energy + Delta-G solvation = -2599.788375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.39563 -35.70574 -33.49420 -31.92347 -30.86241 -29.53411 -27.08414 -25.70589 -25.11379 -23.81485 -22.05669 -20.52023 -18.87879 -17.92137 -16.54157 -15.86545 -15.00253 -14.76295 -14.35406 -13.97427 -13.57635 -13.18221 -13.05049 -12.90063 -12.47990 -12.05442 -11.91826 -11.61973 -11.49954 -11.28210 -11.11920 -10.94580 -10.80690 -10.53082 -10.34342 -10.07615 -9.95739 -9.90501 -9.71589 -9.55943 -9.33521 -8.97256 -8.45337 -8.30137 -7.04031 -5.93150 -4.05516 3.28226 3.35812 3.37858 4.42840 4.70847 5.09948 5.12724 5.24607 5.30165 5.40941 5.61636 5.71551 5.80021 5.86852 5.95707 6.10046 6.17615 6.24094 6.28920 6.39951 6.43402 6.53632 6.58595 6.65361 6.74037 6.79237 6.99855 7.01355 7.10971 7.16888 7.26965 7.31620 7.41732 7.58655 7.68883 7.81330 8.07708 8.24321 8.37767 8.52886 9.05634 9.60472 11.05872 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.009166 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.021176 B = 3054.164874 C = 3551.835706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.205 3.795 4 H 0.037 0.963 5 C -0.537 4.537 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.517 5.517 14 C 0.047 3.953 15 C -0.091 4.091 16 H 0.070 0.930 17 C -0.141 4.141 18 C -0.064 4.064 19 C -0.138 4.138 20 C 0.081 3.919 21 N -0.847 5.847 22 C 0.058 3.942 23 H 0.039 0.961 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.016 0.984 39 H 0.334 0.666 40 H 0.338 0.662 41 H 0.058 0.942 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 6.199 10.815 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.098 3.902 4 H 0.055 0.945 5 C -0.576 4.576 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.241 5.241 14 C -0.081 4.081 15 C -0.110 4.110 16 H 0.089 0.911 17 C -0.198 4.198 18 C -0.065 4.065 19 C -0.196 4.196 20 C -0.050 4.050 21 N -0.377 5.377 22 C -0.070 4.070 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.034 0.966 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.076 0.924 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.351 5.647 10.012 11.733 hybrid contribution 2.324 0.368 0.634 2.437 sum -0.027 6.015 10.645 12.227 Atomic orbital electron populations 1.21709 0.98938 0.98275 1.00599 1.21567 0.92193 0.99280 1.01800 1.19376 0.92968 0.91152 0.86711 0.94491 1.21725 0.92866 1.37670 1.05302 0.92431 1.24908 0.97570 0.95241 0.95780 1.69881 1.34626 1.38455 1.09408 0.86732 0.86561 0.78287 0.77232 1.20818 1.21249 1.20073 1.65130 1.53612 1.01333 1.04013 1.23098 0.99213 0.95575 0.90211 1.22135 0.98239 0.95140 0.95493 0.91133 1.21829 0.99403 1.00353 0.98246 1.21413 0.94253 0.93692 0.97167 1.21937 0.96024 1.01455 1.00159 1.21808 0.99973 0.90262 0.92932 1.58680 1.11830 1.07013 1.60134 1.22708 0.99933 0.91251 0.93118 0.94227 0.95730 0.93408 0.89111 0.95137 0.92998 0.92112 0.92394 0.93495 0.93221 0.92300 0.92985 0.93475 0.91980 0.91001 0.96589 0.85453 0.84882 0.92416 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.80 37.16 0.36 -2.54 16 2 C -0.11 -2.66 5.14 -26.73 -0.14 -2.79 16 3 C 0.20 5.12 1.81 -68.86 -0.12 4.99 16 4 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 5 C -0.54 -14.26 6.34 -34.44 -0.22 -14.48 16 6 H 0.06 1.53 6.03 -52.49 -0.32 1.21 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.08 11.29 55.43 0.63 -24.45 16 9 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.52 -11.13 4.76 -223.90 -1.07 -12.20 16 14 C 0.05 0.93 4.73 -1.90 -0.01 0.92 16 15 C -0.09 -1.44 3.13 -88.76 -0.28 -1.72 16 16 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 17 C -0.14 -1.92 8.03 37.16 0.30 -1.62 16 18 C -0.06 -1.02 0.69 -153.17 -0.11 -1.13 16 19 C -0.14 -2.08 6.71 37.16 0.25 -1.83 16 20 C 0.08 1.11 5.50 -3.83 -0.02 1.08 16 21 N -0.85 -10.67 9.04 -10.37 -0.09 -10.77 16 22 C 0.06 1.17 5.42 -2.77 -0.02 1.15 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.14 16 27 H 0.03 0.72 6.76 -51.93 -0.35 0.37 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.06 1.18 7.55 -51.93 -0.39 0.79 16 30 H 0.06 1.26 5.94 -51.93 -0.31 0.95 16 31 H 0.05 0.56 7.65 -51.93 -0.40 0.17 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.85 6.60 -51.93 -0.34 0.51 16 34 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 35 H 0.05 0.61 6.89 -51.93 -0.36 0.25 16 36 H 0.06 1.06 7.46 -51.93 -0.39 0.68 16 37 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 38 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.33 3.41 9.08 -39.29 -0.36 3.06 16 40 H 0.34 3.99 7.16 -39.29 -0.28 3.71 16 41 H 0.06 1.31 5.82 -51.93 -0.30 1.01 16 42 H 0.07 1.41 7.42 -51.93 -0.39 1.03 16 LS Contribution 308.33 15.07 4.65 4.65 Total: -1.00 -27.54 308.33 -8.32 -35.85 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.32 Total: 6.97 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.09 Total: -16.22 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.53 Total: -47.41 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.54 -8.32 -35.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.624 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds