Wall clock time and date at job start Mon Mar 30 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.50699 * 109.47053 * 184.99965 * 3 2 1 6 6 H 1.07997 * 120.00044 * 239.99782 * 5 3 2 7 7 C 1.37874 * 119.99795 * 60.00183 * 5 3 2 8 8 N 1.31514 * 120.00136 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99956 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47276 * 90.00176 * 9 7 5 11 11 H 1.48508 * 109.47437 * 210.00195 * 9 7 5 12 12 H 1.48500 * 109.47553 * 330.00304 * 9 7 5 13 13 N 1.46904 * 109.46673 * 65.00092 * 3 2 1 14 14 C 1.48533 * 111.00030 * 62.60421 * 13 3 2 15 15 C 1.54936 * 103.22626 * 159.71860 * 14 13 3 16 16 H 1.08994 * 110.72572 * 80.94128 * 15 14 13 17 17 C 1.53000 * 110.72236 * 204.22989 * 15 14 13 18 18 C 1.54603 * 102.91993 * 322.58402 * 15 14 13 19 19 C 1.52998 * 110.30838 * 263.03878 * 18 15 14 20 20 C 1.53002 * 110.30487 * 140.87850 * 18 15 14 21 21 N 1.46896 * 109.47048 * 182.83105 * 20 18 15 22 22 C 1.47907 * 110.99410 * 179.97438 * 13 3 2 23 23 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 24 24 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 26 26 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 27 27 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 28 28 H 0.97009 * 119.99937 * 179.97438 * 8 7 5 29 29 H 1.09000 * 110.66870 * 278.15417 * 14 13 3 30 30 H 1.09002 * 110.66781 * 41.28224 * 14 13 3 31 31 H 1.09000 * 109.47012 * 173.50235 * 17 15 14 32 32 H 1.08997 * 109.46914 * 293.50195 * 17 15 14 33 33 H 1.08998 * 109.47608 * 53.49928 * 17 15 14 34 34 H 1.09001 * 109.47134 * 177.16987 * 19 18 15 35 35 H 1.08998 * 109.47705 * 297.17155 * 19 18 15 36 36 H 1.08998 * 109.46983 * 57.17671 * 19 18 15 37 37 H 1.08999 * 109.46724 * 302.82664 * 20 18 15 38 38 H 1.08999 * 109.47631 * 62.82711 * 20 18 15 39 39 H 1.00897 * 111.00282 * 179.97438 * 21 20 18 40 40 H 1.00900 * 110.99987 * 303.95239 * 21 20 18 41 41 H 1.08997 * 109.91787 * 333.51106 * 22 13 3 42 42 H 1.08999 * 109.91462 * 94.60947 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3376 -2.1733 9 14 6.0048 0.8813 -1.3818 10 1 6.5548 -0.3502 -0.7603 11 1 6.3829 0.9225 -2.8174 12 1 6.5569 2.0737 -0.6902 13 7 1.6513 2.0992 1.2553 14 6 2.2772 1.4280 2.4232 15 6 2.2099 2.5088 3.5313 16 1 1.2206 2.5317 3.9882 17 6 3.2905 2.2692 4.5876 18 6 2.4844 3.8173 2.7550 19 6 3.9602 4.2038 2.8707 20 6 1.5960 4.9450 3.2843 21 7 1.8224 6.1602 2.4907 22 6 2.1290 3.4986 1.2913 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8292 -0.0602 -2.9504 29 1 1.7061 0.5455 2.7113 30 1 3.3122 1.1637 2.2059 31 1 3.3006 3.1008 5.2921 32 1 3.0775 1.3432 5.1216 33 1 4.2631 2.1927 4.1017 34 1 4.1490 5.0990 2.2782 35 1 4.2034 4.4012 3.9147 36 1 4.5798 3.3866 2.5016 37 1 0.5496 4.6500 3.2065 38 1 1.8415 5.1416 4.3279 39 1 1.2465 6.9201 2.8206 40 1 2.7980 6.4177 2.4940 41 1 3.0130 3.6055 0.6626 42 1 1.3427 4.1684 0.9431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309063253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:07 Heat of formation + Delta-G solvation = -28.006829 kcal Electronic energy + Delta-G solvation = -19072.093513 eV Core-core repulsion = 16471.490883 eV Total energy + Delta-G solvation = -2600.602631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87469 -37.36256 -34.88651 -33.76793 -32.56365 -30.82377 -28.86749 -27.09192 -26.58799 -25.52288 -23.70437 -22.02478 -20.78551 -19.24414 -18.42361 -17.21577 -16.88920 -16.11400 -15.86299 -15.39407 -15.05639 -14.72469 -14.53574 -14.29277 -14.11421 -13.65170 -13.50540 -13.22453 -12.99670 -12.89207 -12.74116 -12.48115 -12.41258 -12.30366 -11.93294 -11.81839 -11.59262 -11.44365 -11.30403 -11.11187 -11.06872 -10.91374 -10.41319 -9.43293 -8.90023 -8.00949 -6.22058 1.35366 1.37057 1.45634 2.40018 3.16780 3.55174 3.69185 3.82632 3.99698 4.09800 4.42113 4.48699 4.56649 4.59237 4.67358 4.73703 4.77099 4.87998 4.89687 4.96364 4.97521 5.00677 5.13494 5.18863 5.22435 5.25067 5.37915 5.42680 5.46740 5.48858 5.56223 5.63608 5.70289 5.80995 6.08200 6.23276 6.36228 6.44817 6.61749 6.73358 7.00202 7.47005 8.94337 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020644 B = 0.009166 C = 0.007881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.021176 B = 3054.164874 C = 3551.835706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.212 3.788 4 H -0.006 1.006 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.519 5.519 14 C 0.047 3.953 15 C -0.082 4.082 16 H 0.083 0.917 17 C -0.135 4.135 18 C -0.059 4.059 19 C -0.133 4.133 20 C 0.089 3.911 21 N -0.859 5.859 22 C 0.063 3.937 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.349 0.651 40 H 0.343 0.657 41 H 0.022 0.978 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 7.023 13.228 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.105 3.895 4 H 0.012 0.988 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.242 5.242 14 C -0.081 4.081 15 C -0.101 4.101 16 H 0.102 0.898 17 C -0.193 4.193 18 C -0.060 4.060 19 C -0.190 4.190 20 C -0.042 4.042 21 N -0.392 5.392 22 C -0.066 4.066 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.041 0.959 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.164 6.487 12.443 14.198 hybrid contribution 2.224 0.132 -0.140 2.232 sum 0.060 6.619 12.303 13.971 Atomic orbital electron populations 1.21568 0.96401 0.99763 1.00559 1.21408 0.94430 0.98224 1.00227 1.19119 0.91959 0.91399 0.87071 0.98772 1.21928 0.93831 1.37012 1.05086 0.92883 1.25624 1.01667 0.95207 0.95655 1.70016 1.36154 1.39275 1.09831 0.85781 0.81696 0.78407 0.77132 1.20223 1.21045 1.19646 1.65032 1.53791 1.02143 1.03244 1.23102 0.97324 0.96926 0.90762 1.22112 0.99970 0.93200 0.94816 0.89824 1.21785 0.97686 1.02047 0.97766 1.21373 0.95530 0.94988 0.94068 1.21878 0.94700 1.00474 1.01942 1.21658 0.98779 0.89566 0.94167 1.58610 1.12615 1.07429 1.60500 1.22640 0.97903 0.90205 0.95842 0.95066 0.93451 0.92533 0.92070 0.95122 0.93082 0.92046 0.94986 0.90879 0.92171 0.93426 0.92668 0.90502 0.94721 0.91734 0.93964 0.83721 0.84293 0.95912 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.80 71.98 0.71 -4.56 16 2 C -0.10 -5.16 5.14 30.60 0.16 -5.01 16 3 C 0.21 11.02 1.81 44.17 0.08 11.10 16 4 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 5 C -0.54 -29.65 6.34 25.60 0.16 -29.49 16 6 H 0.05 2.91 6.03 -2.91 -0.02 2.90 16 7 C 0.02 0.99 5.29 84.65 0.45 1.44 16 8 N -0.91 -53.41 11.29 21.45 0.24 -53.17 16 9 Si 0.94 44.30 29.54 68.60 2.03 46.32 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 13 N -0.52 -22.70 4.76 -862.28 -4.10 -26.80 16 14 C 0.05 1.83 4.73 86.65 0.41 2.24 16 15 C -0.08 -2.41 3.13 -9.59 -0.03 -2.44 16 16 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 17 C -0.14 -3.26 8.03 71.98 0.58 -2.68 16 18 C -0.06 -1.76 0.69 -51.31 -0.04 -1.80 16 19 C -0.13 -3.74 6.71 71.98 0.48 -3.25 16 20 C 0.09 2.17 5.50 86.30 0.47 2.64 16 21 N -0.86 -19.71 9.04 -186.72 -1.69 -21.40 16 22 C 0.06 2.54 5.42 86.43 0.47 3.01 16 23 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 2.25 7.75 -2.39 -0.02 2.23 16 26 H 0.06 3.41 5.95 -2.39 -0.01 3.39 16 27 H 0.03 1.47 6.76 -2.39 -0.02 1.45 16 28 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 29 H 0.06 2.34 7.55 -2.39 -0.02 2.33 16 30 H 0.03 1.41 5.94 -2.39 -0.01 1.40 16 31 H 0.07 1.41 7.65 -2.39 -0.02 1.39 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.26 6.60 -2.39 -0.02 1.25 16 34 H 0.05 1.50 6.70 -2.39 -0.02 1.49 16 35 H 0.08 1.71 6.89 -2.39 -0.02 1.69 16 36 H 0.03 1.16 7.46 -2.39 -0.02 1.14 16 37 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 38 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.35 6.22 9.08 -89.70 -0.81 5.40 16 40 H 0.34 7.30 7.16 -89.69 -0.64 6.66 16 41 H 0.02 1.07 5.82 -2.39 -0.01 1.06 16 42 H 0.06 2.48 7.42 -2.39 -0.02 2.46 16 Total: -1.00 -61.24 308.33 -0.08 -61.32 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.46 Total: 22.53 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 3.90 Total: -28.80 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -5.55 Total: -101.37 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -61.24 -0.08 -61.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.311 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds