Wall clock time and date at job start Mon Mar 30 2020 03:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 H 1.08999 * 109.47016 * 309.33846 * 3 2 1 5 5 C 1.50707 * 109.47016 * 189.33733 * 3 2 1 6 6 H 1.07991 * 120.00202 * 239.10716 * 5 3 2 7 7 C 1.37882 * 119.99466 * 58.82819 * 5 3 2 8 8 N 1.31511 * 119.99677 * 220.92783 * 7 5 3 9 9 Si 1.86797 * 120.00064 * 40.93345 * 7 5 3 10 10 H 1.48504 * 109.47351 * 95.49227 * 9 7 5 11 11 H 1.48507 * 109.46992 * 215.48854 * 9 7 5 12 12 H 1.48500 * 109.47297 * 335.48907 * 9 7 5 13 13 N 1.46899 * 109.47291 * 69.34024 * 3 2 1 14 14 C 1.48553 * 110.99840 * 276.97218 * 13 3 2 15 15 C 1.54382 * 104.59485 * 200.95973 * 14 13 3 16 16 H 1.08994 * 110.41125 * 264.90999 * 15 14 13 17 17 C 1.52999 * 110.32243 * 142.74835 * 15 14 13 18 18 C 1.54256 * 105.05796 * 23.84996 * 15 14 13 19 19 C 1.52993 * 110.32507 * 241.10343 * 18 15 14 20 20 C 1.53007 * 110.40551 * 118.94024 * 18 15 14 21 21 N 1.46907 * 109.47018 * 182.85636 * 20 18 15 22 22 C 1.48555 * 111.00050 * 161.55233 * 13 3 2 23 23 H 1.08994 * 109.47311 * 291.03223 * 1 2 3 24 24 H 1.09005 * 109.46365 * 51.03214 * 1 2 3 25 25 H 1.08997 * 109.46745 * 171.02798 * 1 2 3 26 26 H 1.09001 * 109.47731 * 239.99671 * 2 1 3 27 27 H 1.09002 * 109.46958 * 119.99628 * 2 1 3 28 28 H 0.97002 * 120.00326 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.41414 * 319.74132 * 14 13 3 30 30 H 1.08999 * 110.41421 * 82.18242 * 14 13 3 31 31 H 1.08996 * 109.47364 * 304.36227 * 17 15 14 32 32 H 1.09003 * 109.47257 * 64.36304 * 17 15 14 33 33 H 1.09002 * 109.47168 * 184.36305 * 17 15 14 34 34 H 1.09000 * 109.47224 * 177.09467 * 19 18 15 35 35 H 1.09008 * 109.47510 * 297.09189 * 19 18 15 36 36 H 1.08997 * 109.47060 * 57.09295 * 19 18 15 37 37 H 1.08994 * 109.47632 * 302.85612 * 20 18 15 38 38 H 1.09004 * 109.47300 * 62.86387 * 20 18 15 39 39 H 1.00894 * 110.99938 * 180.02562 * 21 20 18 40 40 H 1.00900 * 110.99484 * 303.96018 * 21 20 18 41 41 H 1.08996 * 110.41483 * 277.81766 * 22 13 3 42 42 H 1.09000 * 110.41430 * 40.14270 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5469 2.0022 -0.7948 5 6 3.5293 1.4488 -0.2305 6 1 4.1877 1.8871 0.5047 7 6 4.0516 0.8897 -1.3776 8 7 5.1508 0.1703 -1.3168 9 14 3.1981 1.1543 -3.0179 10 1 3.8284 2.2978 -3.7253 11 1 3.3265 -0.0716 -3.8462 12 1 1.7607 1.4470 -2.7865 13 7 1.7426 2.0671 1.2959 14 6 0.3488 2.5798 1.3323 15 6 0.3519 3.6355 2.4587 16 1 0.0177 3.1919 3.3965 17 6 -0.5440 4.8172 2.0819 18 6 1.8206 4.0925 2.5756 19 6 2.3641 3.7823 3.9717 20 6 1.9387 5.5892 2.2807 21 7 3.3517 5.9880 2.3305 22 6 2.5812 3.2744 1.5100 23 1 -0.3633 0.3688 0.9591 24 1 -0.3632 0.6463 -0.7991 25 1 -0.3633 -1.0151 -0.1603 26 1 1.8935 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.5186 -0.2228 -2.1238 29 1 0.0883 3.0410 0.3796 30 1 -0.3466 1.7742 1.5683 31 1 -0.2217 5.2268 1.1246 32 1 -1.5773 4.4792 2.0031 33 1 -0.4713 5.5876 2.8496 34 1 3.4161 4.0631 4.0227 35 1 1.8009 4.3470 4.7147 36 1 2.2626 2.7157 4.1723 37 1 1.5373 5.7970 1.2889 38 1 1.3760 6.1518 3.0257 39 1 3.4563 6.9732 2.1393 40 1 3.7645 5.7465 3.2189 41 1 3.5669 2.9920 1.8798 42 1 2.6720 3.8433 0.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309063254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:10 Heat of formation + Delta-G solvation = 5.766177 kcal Electronic energy + Delta-G solvation = -18983.718244 eV Core-core repulsion = 16384.580120 eV Total energy + Delta-G solvation = -2599.138123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.51758 -35.87411 -33.44205 -32.03356 -31.28267 -30.03722 -27.74136 -26.05685 -24.28999 -23.98727 -22.35312 -20.42002 -19.34101 -18.13171 -16.49421 -15.91865 -15.31336 -14.81631 -14.55185 -14.05816 -13.65066 -13.50752 -12.80918 -12.69875 -12.48286 -12.38270 -12.29645 -12.02777 -11.87903 -11.61579 -11.32821 -11.08607 -10.96853 -10.72144 -10.47786 -10.21146 -10.09754 -9.96034 -9.81760 -9.49223 -9.43030 -9.13213 -8.40345 -7.97067 -7.28412 -6.22760 -3.86680 3.32794 3.44360 3.50075 4.50765 4.70140 4.84036 4.98803 5.05854 5.15069 5.36652 5.47992 5.57659 5.68673 5.75256 5.82984 5.89653 5.96104 6.07113 6.09229 6.14544 6.20261 6.22302 6.32009 6.45238 6.49346 6.59106 6.67803 6.79283 6.85884 6.90204 7.04957 7.12368 7.21331 7.33871 7.51401 7.60663 7.78674 8.01343 8.24486 8.69172 9.10611 9.62322 10.89387 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.008703 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.027616 B = 3216.368528 C = 3709.038659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C 0.191 3.809 4 H -0.006 1.006 5 C -0.551 4.551 6 H 0.080 0.920 7 C 0.104 3.896 8 N -0.846 5.846 9 Si 0.827 3.173 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.262 1.262 13 N -0.500 5.500 14 C 0.028 3.972 15 C -0.089 4.089 16 H 0.073 0.927 17 C -0.146 4.146 18 C -0.069 4.069 19 C -0.132 4.132 20 C 0.077 3.923 21 N -0.846 5.846 22 C 0.083 3.917 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.262 0.738 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.334 0.666 40 H 0.338 0.662 41 H 0.078 0.922 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.159 8.782 7.704 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.143 4.143 3 C 0.083 3.917 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.098 0.902 7 C -0.103 4.103 8 N -0.479 5.479 9 Si 0.652 3.348 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.186 1.186 13 N -0.224 5.224 14 C -0.100 4.100 15 C -0.108 4.108 16 H 0.091 0.909 17 C -0.203 4.203 18 C -0.070 4.070 19 C -0.189 4.189 20 C -0.054 4.054 21 N -0.376 5.376 22 C -0.045 4.045 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.096 0.904 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.789 7.715 7.405 13.842 hybrid contribution -0.794 1.315 -1.037 1.854 sum -9.583 9.030 6.368 14.627 Atomic orbital electron populations 1.22161 0.99031 0.99606 1.00858 1.21726 0.92043 0.99349 1.01142 1.19710 0.96291 0.90720 0.84995 0.98839 1.20829 0.89892 1.41606 1.06319 0.90190 1.24710 0.94312 0.92377 0.98944 1.70405 1.23642 1.25193 1.28682 0.87467 0.82234 0.78368 0.86767 1.20617 1.21415 1.18630 1.65323 1.00369 1.22893 1.33774 1.23466 0.94311 0.96082 0.96158 1.21981 0.94170 0.95416 0.99258 0.90852 1.21940 0.99135 0.98032 1.01212 1.21457 0.95043 0.93771 0.96717 1.21797 1.00074 1.02147 0.94892 1.21980 0.88239 0.95060 1.00108 1.58659 1.16692 1.22611 1.39678 1.22713 0.96835 0.89246 0.95689 0.92394 0.94228 0.94550 0.93134 0.92060 0.92779 0.94937 0.90506 0.92545 0.93105 0.92905 0.92711 0.94087 0.91634 0.91102 0.96149 0.85387 0.84827 0.90375 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 8.95 37.16 0.33 -2.67 16 2 C -0.10 -2.39 5.43 -26.73 -0.15 -2.53 16 3 C 0.19 4.64 1.37 -68.86 -0.09 4.55 16 4 H -0.01 -0.15 5.96 -51.93 -0.31 -0.46 16 5 C -0.55 -15.45 8.09 -34.44 -0.28 -15.73 16 6 H 0.08 2.42 6.17 -52.49 -0.32 2.09 16 7 C 0.10 2.96 4.73 -17.82 -0.08 2.88 16 8 N -0.85 -25.27 13.96 55.43 0.77 -24.49 16 9 Si 0.83 21.03 27.19 -169.99 -4.62 16.41 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.54 6.39 56.52 0.36 -6.18 16 13 N -0.50 -10.58 5.20 -223.41 -1.16 -11.75 16 14 C 0.03 0.50 4.93 -2.18 -0.01 0.49 16 15 C -0.09 -1.30 3.30 -89.24 -0.29 -1.59 16 16 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 17 C -0.15 -1.77 7.94 37.16 0.29 -1.48 16 18 C -0.07 -1.05 0.82 -153.13 -0.13 -1.18 16 19 C -0.13 -1.84 7.89 37.15 0.29 -1.54 16 20 C 0.08 1.03 4.47 -3.82 -0.02 1.01 16 21 N -0.85 -11.03 9.28 -10.36 -0.10 -11.12 16 22 C 0.08 1.67 3.93 -2.19 -0.01 1.67 16 23 H 0.06 1.01 5.19 -51.93 -0.27 0.74 16 24 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 1.23 6.48 -51.93 -0.34 0.90 16 27 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.03 0.60 7.33 -51.93 -0.38 0.22 16 30 H 0.08 1.29 5.36 -51.93 -0.28 1.01 16 31 H 0.06 0.72 6.68 -51.93 -0.35 0.37 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.57 6.88 -51.93 -0.36 0.21 16 34 H 0.05 0.74 6.69 -51.93 -0.35 0.39 16 35 H 0.04 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.02 6.63 -51.93 -0.34 0.67 16 38 H 0.02 0.24 6.98 -51.93 -0.36 -0.12 16 39 H 0.33 3.59 9.08 -39.29 -0.36 3.23 16 40 H 0.34 4.04 7.15 -39.29 -0.28 3.75 16 41 H 0.08 1.75 6.69 -51.93 -0.35 1.40 16 42 H 0.04 1.00 7.58 -51.93 -0.39 0.61 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -29.50 303.69 -7.81 -37.31 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.14 Total: 5.19 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.14 Total: -16.13 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.48 Total: -47.36 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.62 Total: 16.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.50 -7.81 -37.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.080 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds