Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47098 * 2 1 4 4 H 1.08999 * 109.47016 * 309.33846 * 3 2 1 5 5 C 1.50707 * 109.47016 * 189.33733 * 3 2 1 6 6 H 1.07991 * 120.00202 * 239.10716 * 5 3 2 7 7 C 1.37882 * 119.99466 * 58.82819 * 5 3 2 8 8 N 1.31511 * 119.99677 * 220.92783 * 7 5 3 9 9 Si 1.86797 * 120.00064 * 40.93345 * 7 5 3 10 10 H 1.48504 * 109.47351 * 95.49227 * 9 7 5 11 11 H 1.48507 * 109.46992 * 215.48854 * 9 7 5 12 12 H 1.48500 * 109.47297 * 335.48907 * 9 7 5 13 13 N 1.46899 * 109.47291 * 69.34024 * 3 2 1 14 14 C 1.48553 * 110.99840 * 276.97218 * 13 3 2 15 15 C 1.54382 * 104.59485 * 200.95973 * 14 13 3 16 16 H 1.08994 * 110.41125 * 264.90999 * 15 14 13 17 17 C 1.52999 * 110.32243 * 142.74835 * 15 14 13 18 18 C 1.54256 * 105.05796 * 23.84996 * 15 14 13 19 19 C 1.52993 * 110.32507 * 241.10343 * 18 15 14 20 20 C 1.53007 * 110.40551 * 118.94024 * 18 15 14 21 21 N 1.46907 * 109.47018 * 182.85636 * 20 18 15 22 22 C 1.48555 * 111.00050 * 161.55233 * 13 3 2 23 23 H 1.08994 * 109.47311 * 291.03223 * 1 2 3 24 24 H 1.09005 * 109.46365 * 51.03214 * 1 2 3 25 25 H 1.08997 * 109.46745 * 171.02798 * 1 2 3 26 26 H 1.09001 * 109.47731 * 239.99671 * 2 1 3 27 27 H 1.09002 * 109.46958 * 119.99628 * 2 1 3 28 28 H 0.97002 * 120.00326 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.41414 * 319.74132 * 14 13 3 30 30 H 1.08999 * 110.41421 * 82.18242 * 14 13 3 31 31 H 1.08996 * 109.47364 * 304.36227 * 17 15 14 32 32 H 1.09003 * 109.47257 * 64.36304 * 17 15 14 33 33 H 1.09002 * 109.47168 * 184.36305 * 17 15 14 34 34 H 1.09000 * 109.47224 * 177.09467 * 19 18 15 35 35 H 1.09008 * 109.47510 * 297.09189 * 19 18 15 36 36 H 1.08997 * 109.47060 * 57.09295 * 19 18 15 37 37 H 1.08994 * 109.47632 * 302.85612 * 20 18 15 38 38 H 1.09004 * 109.47300 * 62.86387 * 20 18 15 39 39 H 1.00894 * 110.99938 * 180.02562 * 21 20 18 40 40 H 1.00900 * 110.99484 * 303.96018 * 21 20 18 41 41 H 1.08996 * 110.41483 * 277.81766 * 22 13 3 42 42 H 1.09000 * 110.41430 * 40.14270 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5469 2.0022 -0.7948 5 6 3.5293 1.4488 -0.2305 6 1 4.1877 1.8871 0.5047 7 6 4.0516 0.8897 -1.3776 8 7 5.1508 0.1703 -1.3168 9 14 3.1981 1.1543 -3.0179 10 1 3.8284 2.2978 -3.7253 11 1 3.3265 -0.0716 -3.8462 12 1 1.7607 1.4470 -2.7865 13 7 1.7426 2.0671 1.2959 14 6 0.3488 2.5798 1.3323 15 6 0.3519 3.6355 2.4587 16 1 0.0177 3.1919 3.3965 17 6 -0.5440 4.8172 2.0819 18 6 1.8206 4.0925 2.5756 19 6 2.3641 3.7823 3.9717 20 6 1.9387 5.5892 2.2807 21 7 3.3517 5.9880 2.3305 22 6 2.5812 3.2744 1.5100 23 1 -0.3633 0.3688 0.9591 24 1 -0.3632 0.6463 -0.7991 25 1 -0.3633 -1.0151 -0.1603 26 1 1.8935 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 5.5186 -0.2228 -2.1238 29 1 0.0883 3.0410 0.3796 30 1 -0.3466 1.7742 1.5683 31 1 -0.2217 5.2268 1.1246 32 1 -1.5773 4.4792 2.0031 33 1 -0.4713 5.5876 2.8496 34 1 3.4161 4.0631 4.0227 35 1 1.8009 4.3470 4.7147 36 1 2.2626 2.7157 4.1723 37 1 1.5373 5.7970 1.2889 38 1 1.3760 6.1518 3.0257 39 1 3.4563 6.9732 2.1393 40 1 3.7645 5.7465 3.2189 41 1 3.5669 2.9920 1.8798 42 1 2.6720 3.8433 0.5847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309063254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = -16.443123 kcal Electronic energy + Delta-G solvation = -18984.681311 eV Core-core repulsion = 16384.580120 eV Total energy + Delta-G solvation = -2600.101191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91509 -37.47140 -34.93850 -33.94506 -32.73638 -31.27816 -29.49990 -27.41182 -25.82651 -25.35042 -23.95733 -21.84317 -21.23561 -19.55265 -18.36227 -17.34315 -16.68645 -16.46862 -15.98684 -15.59315 -15.02842 -14.98015 -14.62566 -14.16270 -14.02413 -13.79485 -13.68984 -13.38988 -13.21404 -13.08915 -12.89517 -12.71735 -12.44427 -12.37106 -12.20169 -12.01297 -11.50007 -11.47487 -11.23728 -11.12071 -11.10976 -10.91191 -10.17414 -9.40900 -9.02689 -8.45903 -6.12182 1.26500 1.34375 1.43526 2.34846 2.81335 3.43360 3.59924 3.77987 3.99158 4.08161 4.30700 4.43135 4.47049 4.48071 4.55723 4.57143 4.63457 4.70044 4.78731 4.82622 4.91224 4.95841 5.04721 5.10058 5.12846 5.16187 5.22775 5.32084 5.37417 5.40979 5.45490 5.52196 5.57035 5.65209 5.88776 6.05789 6.36169 6.37911 6.70850 6.75422 6.84538 7.38673 8.70663 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023662 B = 0.008703 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.027616 B = 3216.368528 C = 3709.038659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.197 3.803 4 H -0.018 1.018 5 C -0.560 4.560 6 H 0.042 0.958 7 C 0.058 3.942 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.252 1.252 13 N -0.512 5.512 14 C 0.026 3.974 15 C -0.082 4.082 16 H 0.088 0.912 17 C -0.140 4.140 18 C -0.063 4.063 19 C -0.127 4.127 20 C 0.083 3.917 21 N -0.865 5.865 22 C 0.092 3.908 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.046 0.954 28 H 0.267 0.733 29 H 0.025 0.975 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.348 0.652 40 H 0.344 0.656 41 H 0.041 0.959 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 9.987 8.381 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C 0.088 3.912 4 H -0.001 1.001 5 C -0.596 4.596 6 H 0.060 0.940 7 C -0.146 4.146 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.176 1.176 13 N -0.236 5.236 14 C -0.102 4.102 15 C -0.102 4.102 16 H 0.107 0.893 17 C -0.197 4.197 18 C -0.064 4.064 19 C -0.184 4.184 20 C -0.048 4.048 21 N -0.398 5.398 22 C -0.036 4.036 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.161 0.839 40 H 0.159 0.841 41 H 0.059 0.941 42 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -11.623 8.937 8.083 16.742 hybrid contribution 0.178 0.927 -1.186 1.516 sum -11.445 9.864 6.897 16.609 Atomic orbital electron populations 1.22036 0.95249 1.01306 1.01914 1.21605 0.95400 0.97681 0.99451 1.19548 0.93506 0.91846 0.86256 1.00085 1.21052 0.91825 1.41042 1.05722 0.93990 1.25395 0.95233 0.92029 1.01990 1.70454 1.25698 1.26668 1.29731 0.86470 0.81476 0.78366 0.82248 1.20305 1.20582 1.17605 1.65245 1.02889 1.23791 1.31655 1.23567 0.91925 0.97467 0.97216 1.21987 0.93966 0.95600 0.98622 0.89331 1.21896 0.99148 0.97280 1.01404 1.21432 0.94980 0.94403 0.95626 1.21745 1.00526 1.01503 0.94673 1.21887 0.88765 0.93685 1.00430 1.58610 1.16871 1.23906 1.40387 1.22506 0.96017 0.89251 0.95857 0.90809 0.93931 0.92285 0.95116 0.93540 0.92337 0.95685 0.89214 0.93468 0.91611 0.90718 0.92939 0.90895 0.93366 0.92150 0.93098 0.83858 0.84148 0.94086 0.96933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 8.95 71.98 0.64 -4.60 16 2 C -0.10 -4.73 5.43 30.60 0.17 -4.56 16 3 C 0.20 9.79 1.37 44.17 0.06 9.85 16 4 H -0.02 -0.94 5.96 -2.39 -0.01 -0.95 16 5 C -0.56 -32.95 8.09 25.60 0.21 -32.74 16 6 H 0.04 2.73 6.17 -2.92 -0.02 2.71 16 7 C 0.06 3.39 4.73 84.66 0.40 3.79 16 8 N -0.89 -55.12 13.96 21.45 0.30 -54.82 16 9 Si 0.89 44.39 27.19 68.60 1.87 46.25 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.25 -12.10 6.39 99.48 0.64 -11.46 16 13 N -0.51 -22.00 5.20 -860.75 -4.47 -26.47 16 14 C 0.03 0.88 4.93 86.45 0.43 1.30 16 15 C -0.08 -2.18 3.30 -9.90 -0.03 -2.21 16 16 H 0.09 2.12 7.71 -2.39 -0.02 2.11 16 17 C -0.14 -2.86 7.94 71.98 0.57 -2.29 16 18 C -0.06 -1.86 0.82 -51.29 -0.04 -1.90 16 19 C -0.13 -3.33 7.89 71.98 0.57 -2.76 16 20 C 0.08 2.06 4.47 86.30 0.39 2.44 16 21 N -0.87 -21.74 9.28 -186.70 -1.73 -23.47 16 22 C 0.09 3.84 3.93 86.45 0.34 4.18 16 23 H 0.07 2.36 5.19 -2.39 -0.01 2.35 16 24 H 0.04 1.48 8.05 -2.38 -0.02 1.46 16 25 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.03 1.50 6.48 -2.39 -0.02 1.48 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.21 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.02 0.88 7.33 -2.39 -0.02 0.87 16 30 H 0.09 2.77 5.36 -2.39 -0.01 2.76 16 31 H 0.05 1.07 6.68 -2.39 -0.02 1.05 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.23 6.88 -2.39 -0.02 1.22 16 34 H 0.05 1.38 6.69 -2.39 -0.02 1.37 16 35 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.64 6.63 -2.39 -0.02 1.62 16 38 H 0.05 0.99 6.98 -2.39 -0.02 0.97 16 39 H 0.35 6.99 9.08 -89.70 -0.81 6.18 16 40 H 0.34 7.85 7.15 -89.69 -0.64 7.21 16 41 H 0.04 1.97 6.69 -2.39 -0.02 1.96 16 42 H 0.01 0.58 7.58 -2.39 -0.02 0.57 16 Total: -1.00 -66.79 303.69 -0.86 -67.65 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.52 Total: 20.35 kcal Atomic # 6 Polarization: -33.19 SS G_CDS: 3.69 Total: -29.50 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -5.91 Total: -104.76 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.87 Total: 46.25 kcal Total: -66.79 -0.86 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.208 kcal (2) G-P(sol) polarization free energy of solvation -66.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds