Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47517 * 2 1 4 4 H 1.09000 * 109.47454 * 179.12194 * 3 2 1 5 5 C 1.50697 * 109.47244 * 59.11848 * 3 2 1 6 6 H 1.08000 * 119.99879 * 240.00485 * 5 3 2 7 7 C 1.37871 * 120.00265 * 60.00210 * 5 3 2 8 8 N 1.31523 * 119.99672 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00230 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46992 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47018 * 120.00230 * 9 7 5 12 12 H 1.48500 * 109.46756 * 240.00088 * 9 7 5 13 13 N 1.46903 * 109.46626 * 299.11602 * 3 2 1 14 14 C 1.48849 * 111.13741 * 296.68032 * 13 3 2 15 15 C 1.54383 * 104.63202 * 201.00714 * 14 13 3 16 16 H 1.08995 * 110.40904 * 264.90928 * 15 14 13 17 17 C 1.52998 * 110.32209 * 142.74773 * 15 14 13 18 18 C 1.54265 * 105.05776 * 23.85333 * 15 14 13 19 19 C 1.53001 * 110.32024 * 118.89797 * 18 15 14 20 20 C 1.53005 * 110.40505 * 241.05886 * 18 15 14 21 21 N 1.46901 * 109.46830 * 177.14313 * 20 18 15 22 22 C 1.48560 * 110.99716 * 181.35673 * 13 3 2 23 23 H 1.09001 * 109.47170 * 63.66410 * 1 2 3 24 24 H 1.08998 * 109.47534 * 183.66327 * 1 2 3 25 25 H 1.09007 * 109.46805 * 303.66942 * 1 2 3 26 26 H 1.09003 * 109.47063 * 239.99646 * 2 1 3 27 27 H 1.09004 * 109.47229 * 119.99719 * 2 1 3 28 28 H 0.96998 * 119.99463 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.39619 * 82.21289 * 14 13 3 30 30 H 1.09000 * 110.49356 * 319.84528 * 14 13 3 31 31 H 1.09002 * 109.47589 * 304.35895 * 17 15 14 32 32 H 1.09003 * 109.47211 * 64.36527 * 17 15 14 33 33 H 1.09007 * 109.46870 * 184.36194 * 17 15 14 34 34 H 1.08995 * 109.47158 * 302.90466 * 19 18 15 35 35 H 1.09000 * 109.46833 * 62.90890 * 19 18 15 36 36 H 1.09003 * 109.46630 * 182.90620 * 19 18 15 37 37 H 1.08999 * 109.47393 * 297.14069 * 20 18 15 38 38 H 1.08995 * 109.47026 * 57.14301 * 20 18 15 39 39 H 1.00902 * 110.99722 * 179.97438 * 21 20 18 40 40 H 1.00903 * 111.00114 * 303.95531 * 21 20 18 41 41 H 1.08995 * 110.41431 * 40.26788 * 22 13 3 42 42 H 1.08998 * 110.41688 * 277.94004 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0157 5 6 1.5200 2.1592 1.2193 6 1 0.9006 3.0368 1.1067 7 6 1.8348 1.6947 2.4787 8 7 2.5895 0.6262 2.6158 9 14 1.1896 2.5827 3.9902 10 1 0.3708 3.7474 3.5681 11 1 0.3532 1.6531 4.7911 12 1 2.3326 3.0539 4.8129 13 7 1.5679 2.1287 -1.2100 14 6 2.1258 1.4977 -2.4373 15 6 2.0110 2.5887 -3.5235 16 1 1.0932 2.4591 -4.0969 17 6 3.2268 2.5450 -4.4512 18 6 1.9754 3.9227 -2.7495 19 6 3.1666 4.7979 -3.1441 20 6 0.6624 4.6607 -3.0187 21 7 0.6207 5.8929 -2.2199 22 6 2.0716 3.5254 -1.2608 23 1 -0.3633 0.4559 -0.9210 24 1 -0.3634 -1.0255 0.0657 25 1 -0.3633 0.5698 0.8553 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8106 0.2992 3.5018 29 1 1.5391 0.6219 -2.7145 30 1 3.1693 1.2222 -2.2841 31 1 4.1382 2.6380 -3.8605 32 1 3.2384 1.5978 -4.9906 33 1 3.1700 3.3681 -5.1636 34 1 4.0935 4.2554 -2.9582 35 1 3.0983 5.0487 -4.2026 36 1 3.1566 5.7134 -2.5524 37 1 0.5971 4.9117 -4.0774 38 1 -0.1766 4.0214 -2.7444 39 1 -0.2373 6.3990 -2.3805 40 1 0.7443 5.6922 -1.2388 41 1 3.1067 3.5687 -0.9221 42 1 1.4457 4.1777 -0.6520 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309063255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = -7.210259 kcal Electronic energy + Delta-G solvation = -18970.192559 eV Core-core repulsion = 16370.491735 eV Total energy + Delta-G solvation = -2599.700824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.45336 -35.68015 -33.63206 -32.07445 -30.69758 -29.66644 -27.03383 -25.59750 -25.14568 -23.90854 -22.41458 -20.59280 -18.93651 -17.87753 -16.35157 -15.95651 -15.06003 -14.50823 -14.49710 -14.08568 -13.72036 -13.42164 -13.21591 -12.71639 -12.38766 -12.32144 -11.88357 -11.69740 -11.46743 -11.37023 -11.17800 -10.94372 -10.89959 -10.53652 -10.44824 -10.19170 -10.00629 -9.91126 -9.80489 -9.62721 -9.30154 -8.77303 -8.43648 -8.38028 -7.24994 -5.99785 -4.02966 3.28960 3.37303 3.40660 4.41292 4.73095 5.00643 5.02680 5.19329 5.30045 5.39576 5.56313 5.68445 5.76263 5.87503 5.94128 6.00827 6.06773 6.18094 6.23735 6.27067 6.44249 6.48574 6.51301 6.58449 6.63654 6.66692 6.75687 6.80361 6.88439 7.14544 7.25151 7.39015 7.42953 7.62602 7.68434 7.73424 7.84321 8.13080 8.35719 8.57604 9.02179 9.60864 11.06924 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.008263 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.090684 B = 3387.607125 C = 3943.352977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C 0.207 3.793 4 H -0.002 1.002 5 C -0.493 4.493 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.501 5.501 14 C 0.037 3.963 15 C -0.088 4.088 16 H 0.070 0.930 17 C -0.142 4.142 18 C -0.064 4.064 19 C -0.127 4.127 20 C 0.082 3.918 21 N -0.852 5.852 22 C 0.062 3.938 23 H 0.039 0.961 24 H 0.014 0.986 25 H 0.058 0.942 26 H 0.011 0.989 27 H 0.089 0.911 28 H 0.259 0.741 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.034 0.966 39 H 0.333 0.667 40 H 0.344 0.656 41 H 0.036 0.964 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 4.820 -10.783 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.147 4.147 3 C 0.100 3.900 4 H 0.015 0.985 5 C -0.532 4.532 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.225 5.225 14 C -0.091 4.091 15 C -0.108 4.108 16 H 0.089 0.911 17 C -0.199 4.199 18 C -0.065 4.065 19 C -0.185 4.185 20 C -0.049 4.049 21 N -0.383 5.383 22 C -0.067 4.067 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.055 0.945 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.208 4.880 -11.010 12.104 hybrid contribution -0.245 -0.124 1.422 1.448 sum -1.453 4.756 -9.589 10.802 Atomic orbital electron populations 1.21454 0.97338 0.97467 1.01417 1.21500 0.95183 0.98130 0.99860 1.19446 0.92958 0.91229 0.86354 0.98470 1.21035 1.30810 1.11690 0.89632 0.92265 1.24903 0.95280 0.95111 0.98864 1.69896 1.37415 1.23101 1.22737 0.86539 0.78624 0.79720 0.83125 1.19822 1.21101 1.21208 1.65536 1.53711 1.01041 1.02208 1.23123 0.97685 0.96705 0.91635 1.21928 0.98133 0.94724 0.95986 0.91131 1.21925 0.98175 1.00789 0.99037 1.21403 0.94879 0.93925 0.96275 1.21809 0.96606 0.99552 1.00486 1.21709 0.96331 0.89966 0.96880 1.58841 1.42426 1.23785 1.13212 1.22887 0.98452 0.92311 0.93057 0.94195 0.96674 0.92251 0.96994 0.89230 0.93117 0.91410 0.94870 0.92498 0.93328 0.92727 0.93259 0.93311 0.92044 0.92128 0.94822 0.85527 0.84073 0.94536 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.15 0.35 -2.31 16 2 C -0.11 -2.61 5.30 -26.73 -0.14 -2.75 16 3 C 0.21 5.12 1.53 -68.86 -0.11 5.01 16 4 H 0.00 -0.06 7.99 -51.93 -0.41 -0.48 16 5 C -0.49 -13.12 6.74 -34.44 -0.23 -13.35 16 6 H 0.06 1.59 7.04 -52.49 -0.37 1.22 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.19 11.33 55.43 0.63 -24.56 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.50 -10.49 4.54 -223.15 -1.01 -11.51 16 14 C 0.04 0.68 5.04 -2.02 -0.01 0.67 16 15 C -0.09 -1.32 3.31 -89.23 -0.29 -1.62 16 16 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 17 C -0.14 -1.81 7.94 37.16 0.29 -1.51 16 18 C -0.06 -0.98 0.82 -153.12 -0.13 -1.10 16 19 C -0.13 -1.79 7.09 37.16 0.26 -1.52 16 20 C 0.08 1.16 5.58 -3.82 -0.02 1.13 16 21 N -0.85 -11.31 8.96 -10.37 -0.09 -11.40 16 22 C 0.06 1.18 4.68 -2.18 -0.01 1.17 16 23 H 0.04 0.85 7.74 -51.93 -0.40 0.44 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.06 1.43 7.06 -51.93 -0.37 1.07 16 26 H 0.01 0.26 7.00 -51.93 -0.36 -0.11 16 27 H 0.09 2.40 6.09 -51.93 -0.32 2.09 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.23 7.68 -51.93 -0.40 0.83 16 30 H 0.03 0.63 7.62 -51.93 -0.40 0.24 16 31 H 0.06 0.76 6.68 -51.93 -0.35 0.41 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.62 6.88 -51.92 -0.36 0.27 16 34 H 0.05 0.70 6.62 -51.93 -0.34 0.36 16 35 H 0.05 0.62 6.97 -51.93 -0.36 0.25 16 36 H 0.06 0.90 7.70 -51.93 -0.40 0.50 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.33 3.73 9.08 -39.29 -0.36 3.38 16 40 H 0.34 4.94 6.92 -39.29 -0.27 4.66 16 41 H 0.04 0.76 7.67 -51.93 -0.40 0.37 16 42 H 0.07 1.41 5.34 -51.93 -0.28 1.13 16 LS Contribution 309.21 15.07 4.66 4.66 Total: -1.00 -27.35 309.21 -8.33 -35.68 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.37 Total: 5.62 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.12 Total: -14.67 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.48 Total: -47.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.35 -8.33 -35.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.473 kcal (2) G-P(sol) polarization free energy of solvation -27.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds