Wall clock time and date at job start Mon Mar 30 2020 03:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47517 * 2 1 4 4 H 1.09000 * 109.47454 * 179.12194 * 3 2 1 5 5 C 1.50697 * 109.47244 * 59.11848 * 3 2 1 6 6 H 1.08000 * 119.99879 * 240.00485 * 5 3 2 7 7 C 1.37871 * 120.00265 * 60.00210 * 5 3 2 8 8 N 1.31523 * 119.99672 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00230 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46992 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47018 * 120.00230 * 9 7 5 12 12 H 1.48500 * 109.46756 * 240.00088 * 9 7 5 13 13 N 1.46903 * 109.46626 * 299.11602 * 3 2 1 14 14 C 1.48849 * 111.13741 * 296.68032 * 13 3 2 15 15 C 1.54383 * 104.63202 * 201.00714 * 14 13 3 16 16 H 1.08995 * 110.40904 * 264.90928 * 15 14 13 17 17 C 1.52998 * 110.32209 * 142.74773 * 15 14 13 18 18 C 1.54265 * 105.05776 * 23.85333 * 15 14 13 19 19 C 1.53001 * 110.32024 * 118.89797 * 18 15 14 20 20 C 1.53005 * 110.40505 * 241.05886 * 18 15 14 21 21 N 1.46901 * 109.46830 * 177.14313 * 20 18 15 22 22 C 1.48560 * 110.99716 * 181.35673 * 13 3 2 23 23 H 1.09001 * 109.47170 * 63.66410 * 1 2 3 24 24 H 1.08998 * 109.47534 * 183.66327 * 1 2 3 25 25 H 1.09007 * 109.46805 * 303.66942 * 1 2 3 26 26 H 1.09003 * 109.47063 * 239.99646 * 2 1 3 27 27 H 1.09004 * 109.47229 * 119.99719 * 2 1 3 28 28 H 0.96998 * 119.99463 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.39619 * 82.21289 * 14 13 3 30 30 H 1.09000 * 110.49356 * 319.84528 * 14 13 3 31 31 H 1.09002 * 109.47589 * 304.35895 * 17 15 14 32 32 H 1.09003 * 109.47211 * 64.36527 * 17 15 14 33 33 H 1.09007 * 109.46870 * 184.36194 * 17 15 14 34 34 H 1.08995 * 109.47158 * 302.90466 * 19 18 15 35 35 H 1.09000 * 109.46833 * 62.90890 * 19 18 15 36 36 H 1.09003 * 109.46630 * 182.90620 * 19 18 15 37 37 H 1.08999 * 109.47393 * 297.14069 * 20 18 15 38 38 H 1.08995 * 109.47026 * 57.14301 * 20 18 15 39 39 H 1.00902 * 110.99722 * 179.97438 * 21 20 18 40 40 H 1.00903 * 111.00114 * 303.95531 * 21 20 18 41 41 H 1.08995 * 110.41431 * 40.26788 * 22 13 3 42 42 H 1.08998 * 110.41688 * 277.94004 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0157 5 6 1.5200 2.1592 1.2193 6 1 0.9006 3.0368 1.1067 7 6 1.8348 1.6947 2.4787 8 7 2.5895 0.6262 2.6158 9 14 1.1896 2.5827 3.9902 10 1 0.3708 3.7474 3.5681 11 1 0.3532 1.6531 4.7911 12 1 2.3326 3.0539 4.8129 13 7 1.5679 2.1287 -1.2100 14 6 2.1258 1.4977 -2.4373 15 6 2.0110 2.5887 -3.5235 16 1 1.0932 2.4591 -4.0969 17 6 3.2268 2.5450 -4.4512 18 6 1.9754 3.9227 -2.7495 19 6 3.1666 4.7979 -3.1441 20 6 0.6624 4.6607 -3.0187 21 7 0.6207 5.8929 -2.2199 22 6 2.0716 3.5254 -1.2608 23 1 -0.3633 0.4559 -0.9210 24 1 -0.3634 -1.0255 0.0657 25 1 -0.3633 0.5698 0.8553 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8106 0.2992 3.5018 29 1 1.5391 0.6219 -2.7145 30 1 3.1693 1.2222 -2.2841 31 1 4.1382 2.6380 -3.8605 32 1 3.2384 1.5978 -4.9906 33 1 3.1700 3.3681 -5.1636 34 1 4.0935 4.2554 -2.9582 35 1 3.0983 5.0487 -4.2026 36 1 3.1566 5.7134 -2.5524 37 1 0.5971 4.9117 -4.0774 38 1 -0.1766 4.0214 -2.7444 39 1 -0.2373 6.3990 -2.3805 40 1 0.7443 5.6922 -1.2388 41 1 3.1067 3.5687 -0.9221 42 1 1.4457 4.1777 -0.6520 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309063255.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:12 Heat of formation + Delta-G solvation = -25.396161 kcal Electronic energy + Delta-G solvation = -18970.981159 eV Core-core repulsion = 16370.491735 eV Total energy + Delta-G solvation = -2600.489424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.87033 -37.38165 -34.99976 -33.80716 -32.47846 -30.92643 -28.77289 -27.02396 -26.57872 -25.55483 -24.06921 -22.01242 -20.78682 -19.20358 -18.08685 -17.54643 -16.86844 -15.93334 -15.75088 -15.54822 -15.31012 -15.05797 -14.52116 -14.30585 -14.04448 -13.69551 -13.49997 -13.24138 -12.87399 -12.82248 -12.72951 -12.56681 -12.42446 -12.23945 -12.21540 -11.81066 -11.57230 -11.42123 -11.24344 -11.21345 -11.00949 -10.76675 -10.49696 -9.49492 -9.02590 -8.09440 -6.19068 1.38471 1.40974 1.51470 2.41615 3.18869 3.44225 3.64715 3.74524 3.92280 4.09858 4.34890 4.47536 4.54638 4.58344 4.64004 4.71343 4.80251 4.82267 4.83150 4.87657 4.93175 4.96611 5.03699 5.17072 5.19883 5.24471 5.28438 5.38513 5.41464 5.47776 5.54600 5.61960 5.72977 5.74874 5.84116 6.23251 6.30405 6.38548 6.65784 6.67000 6.93394 7.48543 8.96660 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024425 B = 0.008263 C = 0.007099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.090684 B = 3387.607125 C = 3943.352977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.104 4.104 3 C 0.214 3.786 4 H -0.047 1.047 5 C -0.499 4.499 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.504 5.504 14 C 0.034 3.966 15 C -0.081 4.081 16 H 0.086 0.914 17 C -0.137 4.137 18 C -0.057 4.057 19 C -0.120 4.120 20 C 0.088 3.912 21 N -0.851 5.851 22 C 0.063 3.937 23 H 0.050 0.950 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.024 0.976 27 H 0.059 0.941 28 H 0.259 0.741 29 H 0.071 0.929 30 H 0.018 0.982 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.020 0.980 39 H 0.347 0.653 40 H 0.337 0.663 41 H 0.008 0.992 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 5.788 -12.500 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C 0.107 3.893 4 H -0.030 1.030 5 C -0.537 4.537 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.228 5.228 14 C -0.094 4.094 15 C -0.100 4.100 16 H 0.104 0.896 17 C -0.194 4.194 18 C -0.058 4.058 19 C -0.178 4.178 20 C -0.043 4.043 21 N -0.382 5.382 22 C -0.066 4.066 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.038 0.962 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.027 0.973 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.258 5.864 -12.749 14.214 hybrid contribution 0.104 -0.432 1.937 1.987 sum -2.153 5.432 -10.812 12.290 Atomic orbital electron populations 1.21299 0.95649 0.98507 1.00867 1.21377 0.96539 0.97404 0.98966 1.19209 0.90182 0.92113 0.87809 1.02962 1.21214 1.30425 1.11481 0.90628 0.92883 1.25628 0.95554 0.95802 1.01569 1.70031 1.38447 1.24316 1.23239 0.85598 0.78067 0.78811 0.79750 1.19092 1.20730 1.21029 1.65455 1.53638 1.01886 1.01792 1.23210 0.96604 0.98063 0.91548 1.21923 1.00080 0.92751 0.95251 0.89573 1.21887 0.96341 1.02427 0.98765 1.21375 0.96512 0.94725 0.93164 1.21750 0.95566 0.98712 1.01751 1.21660 0.94698 0.89834 0.98135 1.58840 1.43389 1.23434 1.12577 1.22876 0.96342 0.91282 0.96090 0.93106 0.94578 0.94480 0.95718 0.92221 0.93160 0.91068 0.96393 0.93574 0.92145 0.90509 0.93889 0.90936 0.92742 0.89895 0.96199 0.84018 0.84945 0.97312 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.52 71.98 0.69 -3.99 16 2 C -0.10 -5.12 5.30 30.59 0.16 -4.95 16 3 C 0.21 10.98 1.53 44.17 0.07 11.05 16 4 H -0.05 -2.77 7.99 -2.39 -0.02 -2.79 16 5 C -0.50 -27.24 6.74 25.60 0.17 -27.07 16 6 H 0.05 2.91 7.04 -2.91 -0.02 2.89 16 7 C 0.01 0.71 5.30 84.65 0.45 1.16 16 8 N -0.92 -53.43 11.33 21.45 0.24 -53.19 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.03 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.50 -21.36 4.54 -859.92 -3.90 -25.27 16 14 C 0.03 1.23 5.04 86.39 0.44 1.66 16 15 C -0.08 -2.24 3.31 -9.90 -0.03 -2.27 16 16 H 0.09 2.18 7.71 -2.39 -0.02 2.16 16 17 C -0.14 -3.10 7.94 71.98 0.57 -2.53 16 18 C -0.06 -1.65 0.82 -51.28 -0.04 -1.69 16 19 C -0.12 -3.14 7.09 71.98 0.51 -2.63 16 20 C 0.09 2.25 5.58 86.30 0.48 2.74 16 21 N -0.85 -20.99 8.96 -186.71 -1.67 -22.67 16 22 C 0.06 2.44 4.68 86.45 0.40 2.84 16 23 H 0.05 2.10 7.74 -2.39 -0.02 2.08 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.04 1.78 7.06 -2.38 -0.02 1.76 16 26 H 0.02 1.11 7.00 -2.39 -0.02 1.09 16 27 H 0.06 3.30 6.09 -2.39 -0.01 3.28 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.07 2.49 7.68 -2.39 -0.02 2.47 16 30 H 0.02 0.70 7.62 -2.39 -0.02 0.68 16 31 H 0.05 1.15 6.68 -2.39 -0.02 1.13 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.43 6.88 -2.38 -0.02 1.41 16 34 H 0.04 1.17 6.62 -2.39 -0.02 1.15 16 35 H 0.07 1.56 6.97 -2.39 -0.02 1.55 16 36 H 0.05 1.50 7.70 -2.39 -0.02 1.48 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.35 6.98 9.08 -89.69 -0.81 6.17 16 40 H 0.34 9.38 6.92 -89.69 -0.62 8.75 16 41 H 0.01 0.38 7.67 -2.39 -0.02 0.36 16 42 H 0.06 2.48 5.34 -2.39 -0.01 2.47 16 Total: -1.00 -59.87 309.21 0.12 -59.76 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.44 Total: 21.02 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 3.86 Total: -25.69 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -5.33 Total: -101.12 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -59.87 0.12 -59.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063255.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.359 kcal (2) G-P(sol) polarization free energy of solvation -59.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds