Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46900 * 109.47303 * 64.99966 * 3 2 1 14 14 C 1.48559 * 111.00184 * 69.87044 * 13 3 2 15 15 C 1.54377 * 104.59258 * 159.04037 * 14 13 3 16 16 H 1.08994 * 110.32200 * 95.04756 * 15 14 13 17 17 C 1.53001 * 110.32385 * 217.15362 * 15 14 13 18 18 C 1.54260 * 105.06119 * 336.15058 * 15 14 13 19 19 C 1.53004 * 110.32250 * 118.99979 * 18 15 14 20 20 C 1.53001 * 110.32431 * 241.10249 * 18 15 14 21 21 N 1.46904 * 109.47185 * 180.02562 * 20 18 15 22 22 C 1.48559 * 110.99899 * 185.29664 * 13 3 2 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.08994 * 110.41568 * 277.82380 * 14 13 3 30 30 H 1.09007 * 110.40387 * 40.14857 * 14 13 3 31 31 H 1.08996 * 109.47354 * 58.54796 * 17 15 14 32 32 H 1.09000 * 109.47336 * 178.54696 * 17 15 14 33 33 H 1.09001 * 109.46744 * 298.54799 * 17 15 14 34 34 H 1.08997 * 109.47320 * 59.99992 * 19 18 15 35 35 H 1.09005 * 109.46923 * 180.02562 * 19 18 15 36 36 H 1.08999 * 109.46902 * 299.99661 * 19 18 15 37 37 H 1.08995 * 109.47523 * 300.00021 * 20 18 15 38 38 H 1.08996 * 109.47000 * 60.00135 * 20 18 15 39 39 H 1.00897 * 110.99895 * 180.02562 * 21 20 18 40 40 H 1.00897 * 110.99514 * 303.95344 * 21 20 18 41 41 H 1.09005 * 110.40997 * 319.73601 * 22 13 3 42 42 H 1.09000 * 110.41138 * 82.17866 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6514 2.0994 1.2552 14 6 2.4098 1.5422 2.4047 15 6 2.3211 2.6322 3.4943 16 1 1.4949 2.4223 4.1734 17 6 3.6372 2.7165 4.2700 18 6 2.0637 3.9457 2.7272 19 6 0.7277 4.5572 3.1540 20 6 3.2033 4.9366 2.9729 21 7 2.9392 6.1793 2.2353 22 6 2.0186 3.5388 1.2387 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 1.9482 0.6182 2.7528 30 1 3.4484 1.3654 2.1249 31 1 4.4517 2.9385 3.5807 32 1 3.5684 3.5068 5.0176 33 1 3.8290 1.7643 4.7645 34 1 0.7497 4.7682 4.2232 35 1 0.5598 5.4832 2.6039 36 1 -0.0782 3.8558 2.9385 37 1 3.2718 5.1547 4.0386 38 1 4.1424 4.5026 2.6299 39 1 3.6785 6.8503 2.3811 40 1 2.8073 5.9950 1.2521 41 1 2.9965 3.6764 0.7772 42 1 1.2623 4.1180 0.7090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309063256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = -9.029278 kcal Electronic energy + Delta-G solvation = -19066.654642 eV Core-core repulsion = 16466.874939 eV Total energy + Delta-G solvation = -2599.779702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.43797 -35.73086 -33.31712 -31.88163 -30.91161 -30.06998 -26.76803 -26.07095 -24.47061 -23.93790 -22.28455 -20.72558 -19.02543 -17.85942 -16.52084 -15.56193 -15.17744 -14.98268 -14.25617 -14.07196 -13.50883 -13.30231 -12.77712 -12.57975 -12.53311 -12.27583 -11.88605 -11.85497 -11.59090 -11.28028 -11.24991 -10.99522 -10.81260 -10.55981 -10.41634 -9.99963 -9.98090 -9.88430 -9.81377 -9.60443 -9.35292 -9.05347 -8.42189 -8.37217 -7.16645 -6.00752 -4.13431 3.22941 3.30738 3.31991 4.36278 4.77524 5.02363 5.09505 5.23017 5.27247 5.53814 5.66540 5.71028 5.86201 5.91053 6.01326 6.07143 6.19169 6.23493 6.37430 6.40876 6.48537 6.50655 6.58284 6.67303 6.70505 6.73047 6.85137 6.86961 6.99779 7.11640 7.20110 7.32926 7.36452 7.60001 7.62415 7.74742 7.99004 8.15027 8.25527 8.44752 8.97462 9.53052 10.98710 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.009358 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.123404 B = 2991.254320 C = 3609.652102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C 0.203 3.797 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.506 5.506 14 C 0.039 3.961 15 C -0.090 4.090 16 H 0.069 0.931 17 C -0.145 4.145 18 C -0.060 4.060 19 C -0.119 4.119 20 C 0.073 3.927 21 N -0.850 5.850 22 C 0.049 3.951 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.333 0.667 40 H 0.342 0.658 41 H 0.048 0.952 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 5.915 8.945 10.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.096 3.904 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.230 5.230 14 C -0.090 4.090 15 C -0.109 4.109 16 H 0.088 0.912 17 C -0.203 4.203 18 C -0.061 4.061 19 C -0.177 4.177 20 C -0.057 4.057 21 N -0.379 5.379 22 C -0.080 4.080 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.067 0.933 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.338 5.781 9.251 11.156 hybrid contribution 2.931 -0.260 -0.853 3.064 sum 0.593 5.520 8.398 10.067 Atomic orbital electron populations 1.21708 0.98895 0.98361 1.00570 1.21523 0.92215 0.99102 1.01759 1.19367 0.93045 0.91417 0.86596 0.94557 1.21710 0.92867 1.38132 1.05332 0.92369 1.24910 0.97641 0.95136 0.95723 1.69880 1.34692 1.38212 1.09378 0.86718 0.86410 0.78326 0.77259 1.20684 1.21185 1.20210 1.65689 1.51101 1.01196 1.04968 1.23097 0.99098 0.96009 0.90768 1.21987 0.96981 0.95080 0.96875 0.91248 1.21922 0.97807 1.00846 0.99677 1.21332 0.94987 0.93481 0.96289 1.21647 0.95869 1.00483 0.99651 1.21994 0.96356 0.89474 0.97913 1.58801 1.50631 1.12846 1.15661 1.22981 0.99693 0.91742 0.93564 0.95671 0.94288 0.93335 0.95162 0.89123 0.92909 0.92137 0.91820 0.92525 0.93152 0.93105 0.94101 0.92105 0.92793 0.91518 0.95316 0.85568 0.84503 0.93333 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.57 5.25 -26.73 -0.14 -2.71 16 3 C 0.20 4.95 1.76 -68.86 -0.12 4.83 16 4 H 0.04 1.00 8.13 -51.93 -0.42 0.57 16 5 C -0.54 -14.14 6.57 -34.44 -0.23 -14.37 16 6 H 0.06 1.52 5.65 -52.49 -0.30 1.23 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.63 11.29 55.43 0.63 -24.00 16 9 Si 0.88 20.87 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.51 -10.62 4.81 -223.40 -1.08 -11.70 16 14 C 0.04 0.75 5.03 -2.18 -0.01 0.74 16 15 C -0.09 -1.43 3.30 -89.24 -0.29 -1.73 16 16 H 0.07 1.07 7.71 -51.93 -0.40 0.67 16 17 C -0.15 -2.03 7.93 37.16 0.29 -1.74 16 18 C -0.06 -0.94 0.82 -153.12 -0.13 -1.07 16 19 C -0.12 -1.76 8.08 37.16 0.30 -1.46 16 20 C 0.07 1.04 4.47 -3.82 -0.02 1.02 16 21 N -0.85 -11.02 8.79 -10.37 -0.09 -11.11 16 22 C 0.05 0.93 4.47 -2.18 -0.01 0.92 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 26 H 0.03 0.71 7.05 -51.93 -0.37 0.34 16 27 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.06 1.18 7.64 -51.93 -0.40 0.78 16 30 H 0.06 1.38 5.23 -51.93 -0.27 1.11 16 31 H 0.06 0.85 6.63 -51.93 -0.34 0.50 16 32 H 0.05 0.62 6.98 -51.93 -0.36 0.25 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.90 7.54 -51.93 -0.39 0.51 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.89 6.88 -51.93 -0.36 0.53 16 38 H 0.03 0.44 6.68 -51.93 -0.35 0.09 16 39 H 0.33 3.63 9.08 -39.29 -0.36 3.28 16 40 H 0.34 4.63 8.10 -39.29 -0.32 4.31 16 41 H 0.05 1.03 6.34 -51.93 -0.33 0.70 16 42 H 0.06 1.20 7.86 -51.93 -0.41 0.79 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -26.74 308.74 -8.32 -35.05 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.33 Total: 7.57 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -0.08 Total: -16.31 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.54 Total: -46.81 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.74 -8.32 -35.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.023 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds