Wall clock time and date at job start Mon Mar 30 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47206 * 89.99940 * 9 7 5 11 11 H 1.48498 * 109.47347 * 209.99901 * 9 7 5 12 12 H 1.48500 * 109.47223 * 330.00065 * 9 7 5 13 13 N 1.46900 * 109.47303 * 64.99966 * 3 2 1 14 14 C 1.48559 * 111.00184 * 69.87044 * 13 3 2 15 15 C 1.54377 * 104.59258 * 159.04037 * 14 13 3 16 16 H 1.08994 * 110.32200 * 95.04756 * 15 14 13 17 17 C 1.53001 * 110.32385 * 217.15362 * 15 14 13 18 18 C 1.54260 * 105.06119 * 336.15058 * 15 14 13 19 19 C 1.53004 * 110.32250 * 118.99979 * 18 15 14 20 20 C 1.53001 * 110.32431 * 241.10249 * 18 15 14 21 21 N 1.46904 * 109.47185 * 180.02562 * 20 18 15 22 22 C 1.48559 * 110.99899 * 185.29664 * 13 3 2 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.08994 * 110.41568 * 277.82380 * 14 13 3 30 30 H 1.09007 * 110.40387 * 40.14857 * 14 13 3 31 31 H 1.08996 * 109.47354 * 58.54796 * 17 15 14 32 32 H 1.09000 * 109.47336 * 178.54696 * 17 15 14 33 33 H 1.09001 * 109.46744 * 298.54799 * 17 15 14 34 34 H 1.08997 * 109.47320 * 59.99992 * 19 18 15 35 35 H 1.09005 * 109.46923 * 180.02562 * 19 18 15 36 36 H 1.08999 * 109.46902 * 299.99661 * 19 18 15 37 37 H 1.08995 * 109.47523 * 300.00021 * 20 18 15 38 38 H 1.08996 * 109.47000 * 60.00135 * 20 18 15 39 39 H 1.00897 * 110.99895 * 180.02562 * 21 20 18 40 40 H 1.00897 * 110.99514 * 303.95344 * 21 20 18 41 41 H 1.09005 * 110.40997 * 319.73601 * 22 13 3 42 42 H 1.09000 * 110.41138 * 82.17866 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7600 11 1 6.3830 0.9223 -2.8172 12 1 6.5569 2.0739 -0.6902 13 7 1.6514 2.0994 1.2552 14 6 2.4098 1.5422 2.4047 15 6 2.3211 2.6322 3.4943 16 1 1.4949 2.4223 4.1734 17 6 3.6372 2.7165 4.2700 18 6 2.0637 3.9457 2.7272 19 6 0.7277 4.5572 3.1540 20 6 3.2033 4.9366 2.9729 21 7 2.9392 6.1793 2.2353 22 6 2.0186 3.5388 1.2387 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 1.9482 0.6182 2.7528 30 1 3.4484 1.3654 2.1249 31 1 4.4517 2.9385 3.5807 32 1 3.5684 3.5068 5.0176 33 1 3.8290 1.7643 4.7645 34 1 0.7497 4.7682 4.2232 35 1 0.5598 5.4832 2.6039 36 1 -0.0782 3.8558 2.9385 37 1 3.2718 5.1547 4.0386 38 1 4.1424 4.5026 2.6299 39 1 3.6785 6.8503 2.3811 40 1 2.8073 5.9950 1.2521 41 1 2.9965 3.6764 0.7772 42 1 1.2623 4.1180 0.7090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309063256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:15 Heat of formation + Delta-G solvation = -26.874042 kcal Electronic energy + Delta-G solvation = -19067.428449 eV Core-core repulsion = 16466.874939 eV Total energy + Delta-G solvation = -2600.553510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.90007 -37.38693 -34.78917 -33.67103 -32.52753 -31.36932 -28.62750 -27.45526 -26.04066 -25.34068 -23.94418 -22.25750 -20.90722 -19.18700 -18.41803 -17.13752 -16.60111 -16.38182 -15.90166 -15.51342 -15.02958 -14.93997 -14.44435 -14.05527 -13.87191 -13.79056 -13.42186 -13.21254 -13.15649 -12.94971 -12.74306 -12.62253 -12.40669 -12.35060 -11.98968 -11.76229 -11.61663 -11.45934 -11.24343 -11.15813 -11.06388 -10.89593 -10.44326 -9.49926 -8.98024 -8.04851 -6.25744 1.33681 1.35828 1.43501 2.37329 3.13876 3.53433 3.63970 3.77523 3.97884 4.18865 4.43203 4.44728 4.55672 4.64002 4.69142 4.72943 4.77503 4.80816 4.88059 4.90378 4.98062 5.06557 5.13163 5.20012 5.25129 5.26443 5.38506 5.41728 5.45063 5.46325 5.55696 5.62672 5.66783 5.77927 6.05442 6.17146 6.25081 6.38767 6.53502 6.63449 6.96341 7.43770 8.91190 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.009358 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.123404 B = 2991.254320 C = 3609.652102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.210 3.790 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.507 5.507 14 C 0.039 3.961 15 C -0.083 4.083 16 H 0.083 0.917 17 C -0.140 4.140 18 C -0.053 4.053 19 C -0.112 4.112 20 C 0.080 3.920 21 N -0.849 5.849 22 C 0.052 3.948 23 H 0.045 0.955 24 H 0.031 0.969 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.261 0.739 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.014 0.986 39 H 0.347 0.653 40 H 0.337 0.663 41 H 0.023 0.977 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 6.770 10.987 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.102 3.898 4 H 0.016 0.984 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.230 5.230 14 C -0.089 4.089 15 C -0.103 4.103 16 H 0.102 0.898 17 C -0.197 4.197 18 C -0.054 4.054 19 C -0.169 4.169 20 C -0.051 4.051 21 N -0.378 5.378 22 C -0.077 4.077 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.032 0.968 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.041 0.959 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.145 6.651 11.310 13.295 hybrid contribution 2.840 -0.511 -1.496 3.250 sum 0.695 6.140 9.815 11.598 Atomic orbital electron populations 1.21566 0.96392 0.99765 1.00577 1.21375 0.94427 0.98249 1.00080 1.19119 0.92005 0.91583 0.87055 0.98354 1.21924 0.93871 1.37481 1.05082 0.92785 1.25612 1.01610 0.95108 0.95616 1.70010 1.36181 1.39036 1.09799 0.85778 0.81677 0.78368 0.77139 1.20289 1.20998 1.19761 1.65608 1.51240 1.02215 1.03959 1.23087 0.97135 0.97388 0.91298 1.21973 0.98803 0.93489 0.96013 0.89830 1.21878 0.95914 1.02267 0.99654 1.21299 0.96596 0.94064 0.93454 1.21572 0.94501 0.99977 1.00847 1.21909 0.94771 0.89363 0.99060 1.58799 1.51250 1.12553 1.15231 1.22959 0.97967 0.90568 0.96169 0.93557 0.94946 0.92535 0.95408 0.92042 0.93007 0.92331 0.94355 0.93857 0.90576 0.92360 0.92092 0.92174 0.93779 0.89547 0.96773 0.84047 0.85055 0.95881 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.80 71.98 0.71 -4.48 16 2 C -0.10 -5.00 5.25 30.60 0.16 -4.84 16 3 C 0.21 10.59 1.76 44.17 0.08 10.67 16 4 H 0.00 -0.08 8.13 -2.39 -0.02 -0.10 16 5 C -0.54 -29.19 6.57 25.60 0.17 -29.02 16 6 H 0.05 2.90 5.65 -2.91 -0.02 2.88 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -52.19 11.29 21.45 0.24 -51.94 16 9 Si 0.94 43.41 29.54 68.60 2.03 45.44 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 N -0.51 -21.49 4.81 -860.71 -4.14 -25.63 16 14 C 0.04 1.51 5.03 86.45 0.43 1.95 16 15 C -0.08 -2.49 3.30 -9.90 -0.03 -2.52 16 16 H 0.08 2.31 7.71 -2.39 -0.02 2.29 16 17 C -0.14 -3.54 7.93 71.98 0.57 -2.97 16 18 C -0.05 -1.58 0.82 -51.28 -0.04 -1.62 16 19 C -0.11 -3.01 8.08 71.98 0.58 -2.42 16 20 C 0.08 2.08 4.47 86.30 0.39 2.47 16 21 N -0.85 -20.34 8.79 -186.72 -1.64 -21.98 16 22 C 0.05 1.99 4.47 86.45 0.39 2.38 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 2.22 7.75 -2.38 -0.02 2.20 16 26 H 0.03 1.32 7.05 -2.39 -0.02 1.31 16 27 H 0.06 3.37 5.95 -2.39 -0.01 3.35 16 28 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.06 2.25 7.64 -2.39 -0.02 2.23 16 30 H 0.04 1.68 5.23 -2.38 -0.01 1.67 16 31 H 0.04 1.22 6.63 -2.39 -0.02 1.20 16 32 H 0.08 1.55 6.98 -2.39 -0.02 1.54 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.63 7.54 -2.38 -0.02 1.61 16 36 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.95 6.88 -2.39 -0.02 1.94 16 38 H 0.01 0.41 6.68 -2.39 -0.02 0.40 16 39 H 0.35 6.78 9.08 -89.70 -0.81 5.97 16 40 H 0.34 8.81 8.10 -89.70 -0.73 8.09 16 41 H 0.02 1.00 6.34 -2.38 -0.02 0.98 16 42 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16 Total: -1.00 -58.04 308.74 -0.21 -58.25 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.54 Total: 24.74 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.84 Total: -28.86 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -5.54 Total: -99.56 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -58.04 -0.21 -58.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309063256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.374 kcal (2) G-P(sol) polarization free energy of solvation -58.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds