Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52993 * 109.47057 * 2 1 4 4 H 1.09005 * 109.47085 * 176.22281 * 3 2 1 5 5 C 1.50700 * 109.47490 * 56.21903 * 3 2 1 6 6 H 1.07993 * 120.00429 * 240.00114 * 5 3 2 7 7 C 1.37881 * 119.99527 * 59.99572 * 5 3 2 8 8 N 1.31510 * 120.00455 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99823 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47210 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47079 * 119.99979 * 9 7 5 12 12 H 1.48498 * 109.47592 * 240.00452 * 9 7 5 13 13 N 1.46897 * 109.47415 * 296.21815 * 3 2 1 14 14 C 1.46899 * 110.99937 * 274.27935 * 13 3 2 15 15 H 1.08993 * 110.29143 * 45.49662 * 14 13 3 16 16 C 1.54375 * 110.32549 * 283.36510 * 14 13 3 17 17 N 1.48562 * 104.59824 * 217.25253 * 16 14 13 18 18 C 1.46900 * 110.99855 * 159.03785 * 17 16 14 19 19 C 1.53002 * 109.46925 * 170.00142 * 18 17 16 20 20 C 1.48562 * 104.21904 * 39.48184 * 17 16 14 21 21 C 1.54266 * 110.32197 * 167.73093 * 14 13 3 22 22 H 1.09000 * 110.32394 * 237.79055 * 21 14 13 23 23 C 1.52997 * 110.32370 * 359.97438 * 21 14 13 24 24 H 1.08996 * 109.46670 * 298.67464 * 1 2 3 25 25 H 1.09002 * 109.46672 * 58.67540 * 1 2 3 26 26 H 1.08995 * 109.47267 * 178.67270 * 1 2 3 27 27 H 1.08999 * 109.46929 * 239.99837 * 2 1 3 28 28 H 1.09003 * 109.46482 * 120.00149 * 2 1 3 29 29 H 0.96998 * 120.00493 * 179.97438 * 8 7 5 30 30 H 1.00909 * 110.99838 * 38.22557 * 13 3 2 31 31 H 1.09005 * 110.41014 * 336.03196 * 16 14 13 32 32 H 1.09000 * 110.41417 * 98.35421 * 16 14 13 33 33 H 1.09003 * 109.47209 * 290.00105 * 18 17 16 34 34 H 1.09003 * 109.47085 * 50.00545 * 18 17 16 35 35 H 1.08995 * 109.47445 * 59.99961 * 19 18 17 36 36 H 1.08995 * 109.46954 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47147 * 300.00001 * 19 18 17 38 38 H 1.09001 * 110.40972 * 79.29727 * 20 17 16 39 39 H 1.08998 * 110.40856 * 201.61312 * 20 17 16 40 40 H 1.08994 * 109.47207 * 53.45161 * 23 21 14 41 41 H 1.09003 * 109.46744 * 173.45070 * 23 21 14 42 42 H 1.08996 * 109.47344 * 293.44204 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1280 1.4432 0.0677 5 6 1.4627 2.1795 1.1809 6 1 0.8498 3.0547 1.0242 7 6 1.7170 1.7362 2.4615 8 7 2.4637 0.6706 2.6525 9 14 1.0020 2.6501 3.9254 10 1 0.2045 3.8071 3.4452 11 1 0.1274 1.7346 4.7014 12 1 2.1051 3.1349 4.7933 13 7 1.6264 2.1081 -1.2424 14 6 2.5886 1.8518 -2.3225 15 1 2.8570 0.7957 -2.3469 16 6 3.8501 2.7214 -2.1344 17 7 4.2444 3.1122 -3.5124 18 6 5.0959 4.3092 -3.4968 19 6 5.6827 4.5358 -4.8915 20 6 2.9546 3.3852 -4.1974 21 6 1.9994 2.2885 -3.6797 22 1 1.9789 1.4468 -4.3719 23 6 0.5913 2.8558 -3.4899 24 1 -0.3632 0.4931 0.9016 25 1 -0.3633 0.5343 -0.8779 26 1 -0.3633 -1.0273 -0.0238 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6429 0.3590 3.5534 30 1 0.6962 1.8248 -1.5121 31 1 3.6175 3.6053 -1.5404 32 1 4.6431 2.1434 -1.6598 33 1 4.5001 5.1752 -3.2082 34 1 5.9054 4.1699 -2.7803 35 1 4.8733 4.6750 -5.6081 36 1 6.3148 5.4236 -4.8799 37 1 6.2784 3.6698 -5.1801 38 1 2.5818 4.3730 -3.9262 39 1 3.0745 3.3085 -5.2780 40 1 0.6155 3.6443 -2.7378 41 1 0.2343 3.2657 -4.4347 42 1 -0.0793 2.0615 -3.1621 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309174595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -0.849416 kcal Electronic energy + Delta-G solvation = -18501.019680 eV Core-core repulsion = 15901.594683 eV Total energy + Delta-G solvation = -2599.424997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.20198 -36.15840 -33.90970 -31.78063 -30.46843 -30.02745 -27.04648 -25.73204 -25.45435 -23.27943 -22.15562 -20.66647 -19.60616 -18.44575 -16.42781 -15.65253 -15.33996 -14.73459 -14.69766 -14.22607 -13.78717 -13.29415 -13.06555 -12.81709 -12.50974 -12.21409 -11.98735 -11.91218 -11.82160 -11.34114 -10.99395 -10.92768 -10.82778 -10.76656 -10.60181 -10.51399 -10.40503 -10.21746 -9.86954 -9.68524 -9.50437 -8.91233 -8.31826 -8.21647 -7.17549 -5.95284 -3.96775 3.31822 3.40247 3.44795 4.22879 4.46696 4.92554 4.99262 5.23686 5.25539 5.36303 5.39354 5.50474 5.58495 5.76096 5.79971 5.89983 5.91270 5.97220 6.03888 6.14004 6.20649 6.24674 6.34492 6.36903 6.44619 6.49825 6.58422 6.60086 6.70944 6.91619 7.07512 7.30366 7.32763 7.37070 7.52814 7.74508 7.92717 8.33455 8.59732 8.67349 9.09557 9.67123 11.11675 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.006576 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.559471 B = 4256.696640 C = 4721.047982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.213 3.787 4 H 0.033 0.967 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.679 5.679 14 C 0.088 3.912 15 H 0.039 0.961 16 C 0.047 3.953 17 N -0.516 5.516 18 C 0.039 3.961 19 C -0.143 4.143 20 C 0.043 3.957 21 C -0.095 4.095 22 H 0.069 0.931 23 C -0.139 4.139 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.022 0.978 27 H 0.010 0.990 28 H 0.093 0.907 29 H 0.258 0.742 30 H 0.331 0.669 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 3.959 -12.208 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.105 3.895 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.313 5.313 14 C -0.024 4.024 15 H 0.057 0.943 16 C -0.081 4.081 17 N -0.241 5.241 18 C -0.089 4.089 19 C -0.201 4.201 20 C -0.085 4.085 21 C -0.115 4.115 22 H 0.087 0.913 23 C -0.197 4.197 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.041 0.959 27 H 0.029 0.971 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.152 0.848 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.690 4.055 -12.149 12.919 hybrid contribution -0.906 0.052 1.128 1.447 sum 0.784 4.107 -11.022 11.788 Atomic orbital electron populations 1.21570 0.97841 0.98043 1.01067 1.22105 0.94811 1.01361 1.00310 1.19220 0.95833 0.88407 0.86001 0.94903 1.21103 1.30416 1.11323 0.89602 0.92129 1.24910 0.95576 0.95164 0.98745 1.69886 1.38705 1.23821 1.21187 0.86554 0.78839 0.79839 0.82845 1.19830 1.21283 1.21257 1.61099 1.04001 1.62831 1.03323 1.22065 0.92929 0.96673 0.90721 0.94272 1.23105 0.96710 0.99491 0.88813 1.65382 1.13433 1.31126 1.14118 1.22203 0.97256 0.91567 0.97896 1.21716 1.00577 1.01221 0.96559 1.23110 0.89302 0.97455 0.98616 1.21972 0.95093 0.97567 0.96831 0.91261 1.21716 0.95151 1.01733 1.01058 0.91625 0.95279 0.95851 0.97112 0.88862 0.93229 0.84760 0.92274 0.90851 0.94693 0.91026 0.93026 0.92747 0.92101 0.93782 0.91115 0.90726 0.93707 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.40 37.16 0.35 -2.36 16 2 C -0.15 -3.42 5.52 -26.73 -0.15 -3.57 16 3 C 0.21 5.18 2.18 -68.87 -0.15 5.03 16 4 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 5 C -0.49 -12.96 7.42 -34.44 -0.26 -13.22 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 8 N -0.90 -25.23 11.36 55.43 0.63 -24.60 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -13.92 4.96 -99.51 -0.49 -14.41 16 14 C 0.09 1.59 3.21 -66.33 -0.21 1.38 16 15 H 0.04 0.77 7.27 -51.93 -0.38 0.39 16 16 C 0.05 0.84 5.43 -2.18 -0.01 0.83 16 17 N -0.52 -7.90 5.34 -229.97 -1.23 -9.12 16 18 C 0.04 0.52 5.55 -3.82 -0.02 0.50 16 19 C -0.14 -1.55 10.03 37.16 0.37 -1.18 16 20 C 0.04 0.61 5.46 -2.18 -0.01 0.60 16 21 C -0.10 -1.43 3.65 -89.24 -0.33 -1.75 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.14 -1.95 7.85 37.16 0.29 -1.65 16 24 H 0.06 1.52 7.16 -51.93 -0.37 1.15 16 25 H 0.03 0.55 6.33 -51.93 -0.33 0.22 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.01 0.23 7.38 -51.93 -0.38 -0.16 16 28 H 0.09 2.46 6.18 -51.93 -0.32 2.14 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 30 H 0.33 6.50 4.13 -39.29 -0.16 6.34 16 31 H 0.06 1.16 7.91 -51.93 -0.41 0.75 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.47 7.77 -51.93 -0.40 0.06 16 34 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.05 0.54 7.46 -51.93 -0.39 0.15 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.63 7.47 -51.93 -0.39 0.24 16 39 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 40 H 0.07 1.17 7.53 -51.93 -0.39 0.78 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.76 7.09 -51.93 -0.37 0.39 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -27.07 315.45 -9.16 -36.23 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -7.58 Total: 4.86 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.22 Total: -13.97 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -1.09 Total: -48.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.07 -9.16 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.376 kcal (2) G-P(sol) polarization free energy of solvation -27.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds