Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52993 * 109.47057 * 2 1 4 4 H 1.09005 * 109.47085 * 176.22281 * 3 2 1 5 5 C 1.50700 * 109.47490 * 56.21903 * 3 2 1 6 6 H 1.07993 * 120.00429 * 240.00114 * 5 3 2 7 7 C 1.37881 * 119.99527 * 59.99572 * 5 3 2 8 8 N 1.31510 * 120.00455 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99823 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47210 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47079 * 119.99979 * 9 7 5 12 12 H 1.48498 * 109.47592 * 240.00452 * 9 7 5 13 13 N 1.46897 * 109.47415 * 296.21815 * 3 2 1 14 14 C 1.46899 * 110.99937 * 274.27935 * 13 3 2 15 15 H 1.08993 * 110.29143 * 45.49662 * 14 13 3 16 16 C 1.54375 * 110.32549 * 283.36510 * 14 13 3 17 17 N 1.48562 * 104.59824 * 217.25253 * 16 14 13 18 18 C 1.46900 * 110.99855 * 159.03785 * 17 16 14 19 19 C 1.53002 * 109.46925 * 170.00142 * 18 17 16 20 20 C 1.48562 * 104.21904 * 39.48184 * 17 16 14 21 21 C 1.54266 * 110.32197 * 167.73093 * 14 13 3 22 22 H 1.09000 * 110.32394 * 237.79055 * 21 14 13 23 23 C 1.52997 * 110.32370 * 359.97438 * 21 14 13 24 24 H 1.08996 * 109.46670 * 298.67464 * 1 2 3 25 25 H 1.09002 * 109.46672 * 58.67540 * 1 2 3 26 26 H 1.08995 * 109.47267 * 178.67270 * 1 2 3 27 27 H 1.08999 * 109.46929 * 239.99837 * 2 1 3 28 28 H 1.09003 * 109.46482 * 120.00149 * 2 1 3 29 29 H 0.96998 * 120.00493 * 179.97438 * 8 7 5 30 30 H 1.00909 * 110.99838 * 38.22557 * 13 3 2 31 31 H 1.09005 * 110.41014 * 336.03196 * 16 14 13 32 32 H 1.09000 * 110.41417 * 98.35421 * 16 14 13 33 33 H 1.09003 * 109.47209 * 290.00105 * 18 17 16 34 34 H 1.09003 * 109.47085 * 50.00545 * 18 17 16 35 35 H 1.08995 * 109.47445 * 59.99961 * 19 18 17 36 36 H 1.08995 * 109.46954 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47147 * 300.00001 * 19 18 17 38 38 H 1.09001 * 110.40972 * 79.29727 * 20 17 16 39 39 H 1.08998 * 110.40856 * 201.61312 * 20 17 16 40 40 H 1.08994 * 109.47207 * 53.45161 * 23 21 14 41 41 H 1.09003 * 109.46744 * 173.45070 * 23 21 14 42 42 H 1.08996 * 109.47344 * 293.44204 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1280 1.4432 0.0677 5 6 1.4627 2.1795 1.1809 6 1 0.8498 3.0547 1.0242 7 6 1.7170 1.7362 2.4615 8 7 2.4637 0.6706 2.6525 9 14 1.0020 2.6501 3.9254 10 1 0.2045 3.8071 3.4452 11 1 0.1274 1.7346 4.7014 12 1 2.1051 3.1349 4.7933 13 7 1.6264 2.1081 -1.2424 14 6 2.5886 1.8518 -2.3225 15 1 2.8570 0.7957 -2.3469 16 6 3.8501 2.7214 -2.1344 17 7 4.2444 3.1122 -3.5124 18 6 5.0959 4.3092 -3.4968 19 6 5.6827 4.5358 -4.8915 20 6 2.9546 3.3852 -4.1974 21 6 1.9994 2.2885 -3.6797 22 1 1.9789 1.4468 -4.3719 23 6 0.5913 2.8558 -3.4899 24 1 -0.3632 0.4931 0.9016 25 1 -0.3633 0.5343 -0.8779 26 1 -0.3633 -1.0273 -0.0238 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.6429 0.3590 3.5534 30 1 0.6962 1.8248 -1.5121 31 1 3.6175 3.6053 -1.5404 32 1 4.6431 2.1434 -1.6598 33 1 4.5001 5.1752 -3.2082 34 1 5.9054 4.1699 -2.7803 35 1 4.8733 4.6750 -5.6081 36 1 6.3148 5.4236 -4.8799 37 1 6.2784 3.6698 -5.1801 38 1 2.5818 4.3730 -3.9262 39 1 3.0745 3.3085 -5.2780 40 1 0.6155 3.6443 -2.7378 41 1 0.2343 3.2657 -4.4347 42 1 -0.0793 2.0615 -3.1621 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309174595.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -17.750340 kcal Electronic energy + Delta-G solvation = -18501.752559 eV Core-core repulsion = 15901.594683 eV Total energy + Delta-G solvation = -2600.157876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55345 -37.83201 -35.34333 -33.65137 -31.85135 -31.41028 -28.73681 -27.24336 -26.81016 -25.17484 -23.37756 -21.96623 -21.22835 -19.99225 -18.23189 -17.25315 -16.77681 -16.59876 -15.92098 -15.62172 -15.27627 -14.73312 -14.65879 -14.35207 -14.08233 -13.70603 -13.33786 -13.28421 -13.02483 -12.84897 -12.62232 -12.46230 -12.40922 -12.28012 -12.03611 -11.91397 -11.83188 -11.66293 -11.52157 -11.45567 -11.22855 -10.89200 -10.41473 -9.46704 -8.89815 -8.04277 -6.12500 1.40772 1.43828 1.54534 2.45674 3.00934 3.24735 3.68982 3.72529 3.83062 4.11499 4.20160 4.37705 4.46167 4.54350 4.60057 4.60843 4.63789 4.64726 4.74768 4.78926 4.90006 4.91354 4.97880 5.02403 5.08197 5.12684 5.18190 5.26625 5.36383 5.42249 5.44445 5.54702 5.67864 5.75232 5.83203 5.93229 6.12683 6.35519 6.72599 6.91428 7.02581 7.55644 9.01334 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026748 B = 0.006576 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.559471 B = 4256.696640 C = 4721.047982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.140 4.140 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.494 4.494 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.286 1.286 13 N -0.675 5.675 14 C 0.084 3.916 15 H 0.023 0.977 16 C 0.053 3.947 17 N -0.518 5.518 18 C 0.035 3.965 19 C -0.134 4.134 20 C 0.047 3.953 21 C -0.089 4.089 22 H 0.084 0.916 23 C -0.134 4.134 24 H 0.042 0.958 25 H 0.049 0.951 26 H 0.043 0.957 27 H 0.021 0.979 28 H 0.061 0.939 29 H 0.258 0.742 30 H 0.338 0.662 31 H 0.036 0.964 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 4.705 -13.979 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.180 4.180 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.533 4.533 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.028 4.028 15 H 0.041 0.959 16 C -0.075 4.075 17 N -0.242 5.242 18 C -0.093 4.093 19 C -0.192 4.192 20 C -0.081 4.081 21 C -0.109 4.109 22 H 0.102 0.898 23 C -0.191 4.191 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.160 0.840 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.114 0.886 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.765 4.811 -13.940 14.766 hybrid contribution -0.567 -0.173 1.638 1.742 sum 0.198 4.638 -12.302 13.148 Atomic orbital electron populations 1.21453 0.95802 0.99449 1.00883 1.21961 0.96557 1.00311 0.99191 1.18941 0.93431 0.89182 0.87237 0.98628 1.21301 1.30154 1.11111 0.90739 0.93022 1.25588 0.95938 0.95863 1.01158 1.70019 1.39702 1.24980 1.21578 0.85632 0.78108 0.78832 0.79802 1.19339 1.20787 1.21243 1.60990 1.04814 1.62241 1.02885 1.22119 0.92784 0.95878 0.91971 0.95854 1.22893 0.96146 0.98225 0.90270 1.65409 1.14333 1.32515 1.11993 1.22314 0.96777 0.90564 0.99674 1.21658 1.00906 1.01985 0.94649 1.23171 0.88187 0.96990 0.99765 1.21985 0.95754 0.98453 0.94667 0.89780 1.21655 0.94447 1.01078 1.01968 0.93857 0.93178 0.93772 0.96070 0.92055 0.93312 0.84012 0.94564 0.92801 0.94869 0.91666 0.92245 0.90917 0.92285 0.93791 0.88571 0.92697 0.90853 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.91 9.40 71.99 0.68 -4.23 16 2 C -0.14 -6.66 5.52 30.60 0.17 -6.49 16 3 C 0.22 11.02 2.18 44.17 0.10 11.11 16 4 H 0.00 -0.24 7.33 -2.38 -0.02 -0.26 16 5 C -0.49 -26.88 7.42 25.60 0.19 -26.69 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.68 5.30 84.66 0.45 1.13 16 8 N -0.92 -53.18 11.36 21.45 0.24 -52.93 16 9 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 N -0.68 -27.86 4.96 -468.75 -2.33 -30.19 16 14 C 0.08 3.04 3.21 45.81 0.15 3.19 16 15 H 0.02 0.93 7.27 -2.39 -0.02 0.91 16 16 C 0.05 1.96 5.43 86.45 0.47 2.43 16 17 N -0.52 -15.37 5.34 -881.48 -4.71 -20.08 16 18 C 0.04 0.89 5.55 86.30 0.48 1.37 16 19 C -0.13 -2.58 10.03 71.98 0.72 -1.86 16 20 C 0.05 1.20 5.46 86.45 0.47 1.67 16 21 C -0.09 -2.49 3.65 -9.90 -0.04 -2.53 16 22 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 23 C -0.13 -3.41 7.85 71.98 0.56 -2.85 16 24 H 0.04 1.97 7.16 -2.39 -0.02 1.96 16 25 H 0.05 1.83 6.33 -2.39 -0.02 1.82 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.02 0.92 7.38 -2.39 -0.02 0.91 16 28 H 0.06 3.32 6.18 -2.39 -0.01 3.30 16 29 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.34 12.98 4.13 -89.69 -0.37 12.61 16 31 H 0.04 1.48 7.91 -2.38 -0.02 1.46 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 0.86 7.77 -2.39 -0.02 0.84 16 34 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 35 H 0.06 1.06 7.46 -2.39 -0.02 1.04 16 36 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.15 7.47 -2.39 -0.02 1.13 16 39 H 0.10 2.04 7.84 -2.39 -0.02 2.02 16 40 H 0.05 1.63 7.53 -2.39 -0.02 1.61 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.37 7.09 -2.39 -0.02 1.35 16 Total: -1.00 -58.90 315.45 0.23 -58.67 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.60 Total: 22.19 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 4.40 Total: -23.74 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -6.79 Total: -103.20 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -58.90 0.23 -58.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174595.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.917 kcal (2) G-P(sol) polarization free energy of solvation -58.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds