Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 H 1.08998 * 109.46929 * 305.41644 * 3 2 1 5 5 C 1.50702 * 109.46839 * 185.41772 * 3 2 1 6 6 H 1.07999 * 120.00162 * 239.99305 * 5 3 2 7 7 C 1.37878 * 119.99991 * 59.99962 * 5 3 2 8 8 N 1.31516 * 119.99957 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47068 * 89.99807 * 9 7 5 11 11 H 1.48497 * 109.47221 * 209.99978 * 9 7 5 12 12 H 1.48500 * 109.47128 * 329.99663 * 9 7 5 13 13 N 1.46896 * 109.47291 * 65.41814 * 3 2 1 14 14 C 1.46904 * 111.00031 * 204.61553 * 13 3 2 15 15 H 1.09009 * 110.26936 * 325.36473 * 14 13 3 16 16 C 1.53988 * 110.31013 * 87.45515 * 14 13 3 17 17 N 1.47897 * 107.06112 * 117.69430 * 16 14 13 18 18 C 1.46899 * 111.00524 * 145.84292 * 17 16 14 19 19 C 1.52992 * 109.47348 * 190.00197 * 18 17 16 20 20 C 1.48534 * 105.81790 * 25.32802 * 17 16 14 21 21 C 1.54597 * 110.31160 * 203.17498 * 14 13 3 22 22 H 1.08999 * 110.71903 * 337.48062 * 21 14 13 23 23 C 1.52998 * 110.72471 * 100.76410 * 21 14 13 24 24 H 1.08997 * 109.47466 * 298.61779 * 1 2 3 25 25 H 1.08997 * 109.47312 * 58.62501 * 1 2 3 26 26 H 1.09003 * 109.47366 * 178.62003 * 1 2 3 27 27 H 1.08997 * 109.47667 * 239.99301 * 2 1 3 28 28 H 1.09010 * 109.46684 * 119.99298 * 2 1 3 29 29 H 0.96998 * 119.99282 * 179.97438 * 8 7 5 30 30 H 1.00898 * 111.00070 * 328.56690 * 13 3 2 31 31 H 1.09006 * 109.91566 * 237.04643 * 16 14 13 32 32 H 1.08994 * 109.91745 * 358.13948 * 16 14 13 33 33 H 1.08998 * 109.46755 * 310.00508 * 18 17 16 34 34 H 1.08998 * 109.46685 * 69.99729 * 18 17 16 35 35 H 1.09004 * 109.47065 * 180.02562 * 19 18 17 36 36 H 1.09008 * 109.47368 * 299.99702 * 19 18 17 37 37 H 1.08998 * 109.47610 * 60.00098 * 19 18 17 38 38 H 1.09002 * 110.66428 * 79.23134 * 20 17 16 39 39 H 1.09003 * 110.66785 * 202.19129 * 20 17 16 40 40 H 1.08998 * 109.47125 * 60.00382 * 23 21 14 41 41 H 1.09001 * 109.46541 * 180.02562 * 23 21 14 42 42 H 1.08993 * 109.47401 * 300.00133 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5995 1.9835 -0.8375 5 6 3.5410 1.4446 -0.1342 6 1 4.1516 1.8874 0.6388 7 6 4.1347 0.8813 -1.2438 8 7 3.3911 0.3418 -2.1849 9 14 5.9953 0.8846 -1.4104 10 1 6.5494 -0.3484 -0.7955 11 1 6.3634 0.9291 -2.8483 12 1 6.5520 2.0755 -0.7198 13 7 1.6600 2.0962 1.2594 14 6 1.5889 3.5543 1.0952 15 1 2.3488 3.8925 0.3906 16 6 0.1876 3.9699 0.6103 17 7 -0.3967 4.8323 1.6602 18 6 -1.2452 5.8770 1.0715 19 6 -1.6278 6.8916 2.1508 20 6 0.7561 5.4275 2.3833 21 6 1.7689 4.2575 2.4601 22 1 1.5169 3.5824 3.2779 23 6 3.1965 4.7862 2.6127 24 1 -0.3634 0.4922 0.9021 25 1 -0.3634 0.5350 -0.8774 26 1 -0.3634 -1.0274 -0.0247 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8089 -0.0541 -2.9656 30 1 0.7876 1.7288 1.6087 31 1 0.2676 4.5251 -0.3243 32 1 -0.4323 3.0853 0.4646 33 1 -0.6992 6.3824 0.2749 34 1 -2.1481 5.4239 0.6622 35 1 -2.2578 7.6665 1.7140 36 1 -2.1739 6.3862 2.9474 37 1 -0.7249 7.3447 2.5601 38 1 1.1742 6.2619 1.8200 39 1 0.4595 5.7492 3.3816 40 1 3.4057 5.5020 1.8178 41 1 3.3006 5.2768 3.5805 42 1 3.9001 3.9563 2.5489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309174596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = -8.149895 kcal Electronic energy + Delta-G solvation = -18430.350555 eV Core-core repulsion = 15830.608985 eV Total energy + Delta-G solvation = -2599.741570 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.18772 -35.98805 -33.80467 -31.98976 -30.76375 -30.05487 -27.18376 -26.11018 -25.10278 -22.83263 -21.97226 -20.45417 -19.74976 -19.20880 -16.14879 -15.84745 -15.31045 -14.83070 -14.55392 -14.31575 -13.80093 -13.04710 -12.86301 -12.82624 -12.62063 -12.31919 -12.23933 -11.87581 -11.75606 -11.40346 -11.19014 -11.07262 -10.90362 -10.88540 -10.59129 -10.51756 -10.42164 -10.20185 -9.92388 -9.62798 -9.41443 -9.03061 -8.32138 -8.21062 -7.15163 -5.94182 -3.98045 3.33537 3.40010 3.43612 4.19169 4.46563 4.93648 5.00234 5.13853 5.18176 5.34455 5.42311 5.52054 5.54528 5.68414 5.78595 5.84229 5.92577 5.97745 6.02383 6.08077 6.13612 6.20281 6.20884 6.26781 6.36372 6.47836 6.56584 6.65641 6.78860 6.89939 7.11900 7.13126 7.23635 7.26537 7.56768 7.82393 7.96296 8.37343 8.44164 8.82525 9.10469 9.66934 11.11084 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.006805 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.685014 B = 4113.490595 C = 4706.011023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.675 5.675 14 C 0.094 3.906 15 H 0.086 0.914 16 C 0.008 3.992 17 N -0.517 5.517 18 C 0.041 3.959 19 C -0.150 4.150 20 C 0.038 3.962 21 C -0.085 4.085 22 H 0.084 0.916 23 C -0.136 4.136 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.258 0.742 30 H 0.321 0.679 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 9.221 6.629 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.306 5.306 14 C -0.018 4.018 15 H 0.104 0.896 16 C -0.122 4.122 17 N -0.241 5.241 18 C -0.088 4.088 19 C -0.208 4.208 20 C -0.090 4.090 21 C -0.104 4.104 22 H 0.102 0.898 23 C -0.193 4.193 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.140 0.860 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.531 8.825 7.026 13.034 hybrid contribution 0.553 0.532 -1.416 1.610 sum -5.978 9.356 5.610 12.440 Atomic orbital electron populations 1.21887 0.99622 0.99568 0.99661 1.21761 0.91212 1.00433 1.02995 1.19156 0.95307 0.89937 0.84498 0.98181 1.21223 0.91311 1.36226 1.04166 0.92096 1.24956 0.97959 0.95751 0.95902 1.69877 1.34606 1.39572 1.09634 0.86579 0.86008 0.78386 0.76888 1.20780 1.21510 1.20040 1.60726 1.35734 1.01286 1.32838 1.22392 0.93584 0.90495 0.95350 0.89569 1.23789 0.97709 0.97593 0.93067 1.64782 1.17603 1.17926 1.23788 1.22252 0.97820 0.92641 0.96071 1.21833 1.01440 0.98251 0.99254 1.23311 0.90794 0.96377 0.98523 1.22083 0.93943 0.95452 0.98943 0.89751 1.21676 0.96449 1.01067 1.00138 0.94454 0.93995 0.94479 0.88347 0.94091 0.93161 0.86010 0.94323 0.90619 0.95060 0.91034 0.92603 0.91953 0.92631 0.94211 0.90658 0.93409 0.93559 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.72 37.16 0.36 -2.57 16 2 C -0.13 -2.96 5.36 -26.73 -0.14 -3.10 16 3 C 0.22 5.35 1.88 -68.87 -0.13 5.22 16 4 H 0.00 0.01 7.77 -51.93 -0.40 -0.39 16 5 C -0.49 -13.36 8.50 -34.44 -0.29 -13.66 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.45 11.29 55.43 0.63 -24.82 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.15 6.02 -99.53 -0.60 -14.75 16 14 C 0.09 1.76 2.66 -66.36 -0.18 1.58 16 15 H 0.09 1.83 7.39 -51.92 -0.38 1.45 16 16 C 0.01 0.14 6.23 -2.76 -0.02 0.12 16 17 N -0.52 -7.68 5.40 -230.47 -1.24 -8.93 16 18 C 0.04 0.51 5.75 -3.83 -0.02 0.49 16 19 C -0.15 -1.55 9.57 37.15 0.36 -1.20 16 20 C 0.04 0.53 4.55 -1.90 -0.01 0.52 16 21 C -0.08 -1.34 3.37 -88.76 -0.30 -1.64 16 22 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 23 C -0.14 -2.03 9.16 37.16 0.34 -1.69 16 24 H 0.04 0.66 6.49 -51.93 -0.34 0.33 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 28 H 0.04 0.97 8.14 -51.92 -0.42 0.54 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.32 6.36 5.99 -39.29 -0.24 6.13 16 31 H 0.04 0.67 7.57 -51.93 -0.39 0.27 16 32 H 0.08 1.36 7.61 -51.93 -0.40 0.96 16 33 H 0.03 0.40 7.81 -51.93 -0.41 0.00 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.05 0.56 6.79 -51.93 -0.35 0.21 16 38 H 0.04 0.54 7.88 -51.93 -0.41 0.13 16 39 H 0.08 0.95 7.65 -51.93 -0.40 0.55 16 40 H 0.05 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -27.44 321.92 -9.30 -36.74 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.79 Total: 4.97 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.13 Total: -14.51 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -1.22 Total: -48.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.44 -9.30 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.594 kcal (2) G-P(sol) polarization free energy of solvation -27.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds