Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 H 1.08998 * 109.46929 * 305.41644 * 3 2 1 5 5 C 1.50702 * 109.46839 * 185.41772 * 3 2 1 6 6 H 1.07999 * 120.00162 * 239.99305 * 5 3 2 7 7 C 1.37878 * 119.99991 * 59.99962 * 5 3 2 8 8 N 1.31516 * 119.99957 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47068 * 89.99807 * 9 7 5 11 11 H 1.48497 * 109.47221 * 209.99978 * 9 7 5 12 12 H 1.48500 * 109.47128 * 329.99663 * 9 7 5 13 13 N 1.46896 * 109.47291 * 65.41814 * 3 2 1 14 14 C 1.46904 * 111.00031 * 204.61553 * 13 3 2 15 15 H 1.09009 * 110.26936 * 325.36473 * 14 13 3 16 16 C 1.53988 * 110.31013 * 87.45515 * 14 13 3 17 17 N 1.47897 * 107.06112 * 117.69430 * 16 14 13 18 18 C 1.46899 * 111.00524 * 145.84292 * 17 16 14 19 19 C 1.52992 * 109.47348 * 190.00197 * 18 17 16 20 20 C 1.48534 * 105.81790 * 25.32802 * 17 16 14 21 21 C 1.54597 * 110.31160 * 203.17498 * 14 13 3 22 22 H 1.08999 * 110.71903 * 337.48062 * 21 14 13 23 23 C 1.52998 * 110.72471 * 100.76410 * 21 14 13 24 24 H 1.08997 * 109.47466 * 298.61779 * 1 2 3 25 25 H 1.08997 * 109.47312 * 58.62501 * 1 2 3 26 26 H 1.09003 * 109.47366 * 178.62003 * 1 2 3 27 27 H 1.08997 * 109.47667 * 239.99301 * 2 1 3 28 28 H 1.09010 * 109.46684 * 119.99298 * 2 1 3 29 29 H 0.96998 * 119.99282 * 179.97438 * 8 7 5 30 30 H 1.00898 * 111.00070 * 328.56690 * 13 3 2 31 31 H 1.09006 * 109.91566 * 237.04643 * 16 14 13 32 32 H 1.08994 * 109.91745 * 358.13948 * 16 14 13 33 33 H 1.08998 * 109.46755 * 310.00508 * 18 17 16 34 34 H 1.08998 * 109.46685 * 69.99729 * 18 17 16 35 35 H 1.09004 * 109.47065 * 180.02562 * 19 18 17 36 36 H 1.09008 * 109.47368 * 299.99702 * 19 18 17 37 37 H 1.08998 * 109.47610 * 60.00098 * 19 18 17 38 38 H 1.09002 * 110.66428 * 79.23134 * 20 17 16 39 39 H 1.09003 * 110.66785 * 202.19129 * 20 17 16 40 40 H 1.08998 * 109.47125 * 60.00382 * 23 21 14 41 41 H 1.09001 * 109.46541 * 180.02562 * 23 21 14 42 42 H 1.08993 * 109.47401 * 300.00133 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5995 1.9835 -0.8375 5 6 3.5410 1.4446 -0.1342 6 1 4.1516 1.8874 0.6388 7 6 4.1347 0.8813 -1.2438 8 7 3.3911 0.3418 -2.1849 9 14 5.9953 0.8846 -1.4104 10 1 6.5494 -0.3484 -0.7955 11 1 6.3634 0.9291 -2.8483 12 1 6.5520 2.0755 -0.7198 13 7 1.6600 2.0962 1.2594 14 6 1.5889 3.5543 1.0952 15 1 2.3488 3.8925 0.3906 16 6 0.1876 3.9699 0.6103 17 7 -0.3967 4.8323 1.6602 18 6 -1.2452 5.8770 1.0715 19 6 -1.6278 6.8916 2.1508 20 6 0.7561 5.4275 2.3833 21 6 1.7689 4.2575 2.4601 22 1 1.5169 3.5824 3.2779 23 6 3.1965 4.7862 2.6127 24 1 -0.3634 0.4922 0.9021 25 1 -0.3634 0.5350 -0.8774 26 1 -0.3634 -1.0274 -0.0247 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8089 -0.0541 -2.9656 30 1 0.7876 1.7288 1.6087 31 1 0.2676 4.5251 -0.3243 32 1 -0.4323 3.0853 0.4646 33 1 -0.6992 6.3824 0.2749 34 1 -2.1481 5.4239 0.6622 35 1 -2.2578 7.6665 1.7140 36 1 -2.1739 6.3862 2.9474 37 1 -0.7249 7.3447 2.5601 38 1 1.1742 6.2619 1.8200 39 1 0.4595 5.7492 3.3816 40 1 3.4057 5.5020 1.8178 41 1 3.3006 5.2768 3.5805 42 1 3.9001 3.9563 2.5489 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309174596.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = -25.995483 kcal Electronic energy + Delta-G solvation = -18431.124397 eV Core-core repulsion = 15830.608985 eV Total energy + Delta-G solvation = -2600.515412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52171 -37.68761 -35.18682 -33.91875 -32.30966 -31.25614 -28.88635 -27.56500 -26.52569 -24.62196 -23.23324 -21.75289 -21.37914 -20.77547 -18.25794 -17.19462 -16.79745 -16.38219 -15.86553 -15.76775 -15.45547 -14.70688 -14.43799 -14.11236 -13.94222 -13.65126 -13.52878 -13.32755 -13.12491 -13.07812 -12.80245 -12.55632 -12.43096 -12.30401 -12.00285 -11.94752 -11.89514 -11.78361 -11.56754 -11.51330 -11.08040 -10.99143 -10.41724 -9.40535 -8.92763 -8.05329 -6.16880 1.40702 1.41793 1.51574 2.44231 3.02605 3.19841 3.54815 3.77571 3.83410 4.17744 4.24509 4.32753 4.37815 4.50655 4.51828 4.57815 4.59607 4.63550 4.70770 4.76797 4.82178 4.90976 4.95096 5.00047 5.10567 5.11364 5.23552 5.26221 5.30785 5.35820 5.40197 5.47700 5.63662 5.77759 5.85554 5.95985 6.12943 6.39765 6.56527 6.97783 7.03856 7.52205 8.97742 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.006805 C = 0.005948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.685014 B = 4113.490595 C = 4706.011023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.228 3.772 4 H -0.033 1.033 5 C -0.507 4.507 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.674 5.674 14 C 0.091 3.909 15 H 0.053 0.947 16 C 0.018 3.982 17 N -0.519 5.519 18 C 0.036 3.964 19 C -0.143 4.143 20 C 0.046 3.954 21 C -0.079 4.079 22 H 0.081 0.919 23 C -0.131 4.131 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.030 0.970 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.075 0.925 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 10.405 8.035 15.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.546 4.546 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.305 5.305 14 C -0.021 4.021 15 H 0.071 0.929 16 C -0.112 4.112 17 N -0.244 5.244 18 C -0.092 4.092 19 C -0.201 4.201 20 C -0.081 4.081 21 C -0.099 4.099 22 H 0.100 0.900 23 C -0.189 4.189 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.123 10.024 8.448 14.920 hybrid contribution 0.712 0.189 -1.853 1.994 sum -6.411 10.213 6.595 13.744 Atomic orbital electron populations 1.21740 0.96385 1.01096 1.00279 1.21594 0.94120 0.99164 1.01113 1.18893 0.93862 0.90475 0.84831 1.01527 1.21469 0.92832 1.36205 1.04059 0.93262 1.25660 1.02086 0.95467 0.95642 1.70006 1.36134 1.40032 1.09944 0.85638 0.81084 0.78470 0.76914 1.20224 1.21059 1.19677 1.60657 1.36309 1.02648 1.30898 1.22378 0.93758 0.89232 0.96717 0.92876 1.23544 0.96476 0.97753 0.93466 1.64807 1.17832 1.18838 1.22926 1.22364 0.97306 0.92576 0.96915 1.21790 1.01957 0.97884 0.98440 1.23310 0.89754 0.95379 0.99706 1.22043 0.95259 0.95962 0.96634 0.90033 1.21628 0.95132 1.00251 1.01855 0.92584 0.94618 0.92414 0.91460 0.94574 0.93173 0.85165 0.95170 0.91626 0.95406 0.90869 0.90806 0.91841 0.92196 0.93642 0.88265 0.93350 0.90595 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.72 71.98 0.70 -4.59 16 2 C -0.12 -5.81 5.36 30.59 0.16 -5.65 16 3 C 0.23 11.51 1.88 44.17 0.08 11.59 16 4 H -0.03 -1.85 7.77 -2.39 -0.02 -1.87 16 5 C -0.51 -28.43 8.50 25.60 0.22 -28.21 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.52 5.29 84.65 0.45 0.97 16 8 N -0.92 -53.51 11.29 21.45 0.24 -53.27 16 9 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.67 -28.69 6.02 -468.81 -2.82 -31.51 16 14 C 0.09 3.45 2.66 45.79 0.12 3.57 16 15 H 0.05 2.36 7.39 -2.38 -0.02 2.34 16 16 C 0.02 0.60 6.23 86.45 0.54 1.14 16 17 N -0.52 -14.56 5.40 -883.06 -4.76 -19.33 16 18 C 0.04 0.85 5.75 86.30 0.50 1.34 16 19 C -0.14 -2.51 9.57 71.98 0.69 -1.82 16 20 C 0.05 1.17 4.55 86.65 0.39 1.57 16 21 C -0.08 -2.43 3.37 -9.59 -0.03 -2.46 16 22 H 0.08 2.57 8.06 -2.39 -0.02 2.55 16 23 C -0.13 -3.78 9.16 71.98 0.66 -3.12 16 24 H 0.06 1.93 6.49 -2.39 -0.02 1.91 16 25 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 3.67 5.94 -2.39 -0.01 3.65 16 28 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.33 12.95 5.99 -89.70 -0.54 12.41 16 31 H 0.03 1.06 7.57 -2.38 -0.02 1.04 16 32 H 0.07 2.36 7.61 -2.39 -0.02 2.34 16 33 H 0.03 0.67 7.81 -2.39 -0.02 0.65 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.06 1.00 6.79 -2.39 -0.02 0.99 16 38 H 0.05 1.12 7.88 -2.39 -0.02 1.11 16 39 H 0.10 2.12 7.65 -2.39 -0.02 2.10 16 40 H 0.05 1.37 8.10 -2.39 -0.02 1.35 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -59.94 321.92 -0.42 -60.36 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.42 Total: 22.76 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 4.48 Total: -25.67 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -7.35 Total: -104.11 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -59.94 -0.42 -60.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174596.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.366 kcal (2) G-P(sol) polarization free energy of solvation -59.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds