Wall clock time and date at job start Mon Mar 30 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47493 * 2 1 4 4 H 1.09008 * 109.47283 * 305.65404 * 3 2 1 5 5 C 1.50696 * 109.47463 * 185.65020 * 3 2 1 6 6 H 1.07994 * 119.99978 * 240.00009 * 5 3 2 7 7 C 1.37879 * 119.99909 * 59.99981 * 5 3 2 8 8 N 1.31510 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46866 * 90.00336 * 9 7 5 11 11 H 1.48500 * 109.46983 * 209.99939 * 9 7 5 12 12 H 1.48496 * 109.47136 * 330.00520 * 9 7 5 13 13 N 1.46905 * 109.47148 * 65.64746 * 3 2 1 14 14 C 1.46896 * 111.00006 * 204.90229 * 13 3 2 15 15 H 1.08992 * 110.29097 * 327.77752 * 14 13 3 16 16 C 1.54381 * 110.41025 * 89.96649 * 14 13 3 17 17 N 1.48843 * 104.63394 * 142.78961 * 16 14 13 18 18 C 1.46904 * 111.13430 * 201.00423 * 17 16 14 19 19 C 1.53003 * 109.46912 * 185.19662 * 18 17 16 20 20 C 1.48565 * 104.07953 * 320.54329 * 17 16 14 21 21 C 1.54265 * 110.32335 * 205.64763 * 14 13 3 22 22 H 1.08994 * 110.32605 * 122.10669 * 21 14 13 23 23 C 1.53009 * 110.40832 * 359.94661 * 21 14 13 24 24 H 1.08992 * 109.47448 * 174.51472 * 1 2 3 25 25 H 1.09001 * 109.46911 * 294.51746 * 1 2 3 26 26 H 1.09004 * 109.47286 * 54.51288 * 1 2 3 27 27 H 1.09000 * 109.47121 * 240.00552 * 2 1 3 28 28 H 1.08996 * 109.47370 * 120.00113 * 2 1 3 29 29 H 0.96997 * 120.00172 * 179.97438 * 8 7 5 30 30 H 1.00896 * 110.99691 * 328.86307 * 13 3 2 31 31 H 1.09000 * 110.41100 * 261.56881 * 16 14 13 32 32 H 1.09000 * 110.40940 * 23.88864 * 16 14 13 33 33 H 1.08998 * 109.46840 * 305.19445 * 18 17 16 34 34 H 1.08999 * 109.47076 * 65.19586 * 18 17 16 35 35 H 1.09008 * 109.46669 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47190 * 299.99568 * 19 18 17 37 37 H 1.08999 * 109.47312 * 60.00068 * 19 18 17 38 38 H 1.09001 * 110.40819 * 280.63533 * 20 17 16 39 39 H 1.09003 * 110.40957 * 158.30574 * 20 17 16 40 40 H 1.08998 * 109.46753 * 302.85858 * 23 21 14 41 41 H 1.08998 * 109.47242 * 62.85337 * 23 21 14 42 42 H 1.09000 * 109.47181 * 182.85811 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9848 -0.8351 5 6 3.5405 1.4448 -0.1399 6 1 4.1541 1.8864 0.6314 7 6 4.1300 0.8830 -1.2525 8 7 3.3828 0.3457 -2.1920 9 14 5.9900 0.8865 -1.4263 10 1 6.5464 -0.3473 -0.8153 11 1 6.3525 0.9331 -2.8656 12 1 6.5494 2.0764 -0.7360 13 7 1.6649 2.0945 1.2618 14 6 1.5866 3.5523 1.0981 15 1 2.3120 3.8889 0.3575 16 6 0.1605 3.9714 0.6812 17 7 -0.0787 5.2544 1.3969 18 6 -1.5159 5.5345 1.5159 19 6 -1.7160 6.9174 2.1391 20 6 0.5349 5.0426 2.7332 21 6 1.8329 4.2570 2.4481 22 1 2.6791 4.9395 2.3701 23 6 2.0829 3.2258 3.5505 24 1 -0.3634 -1.0229 -0.0982 25 1 -0.3633 0.4265 0.9350 26 1 -0.3634 0.5966 -0.8368 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7975 -0.0491 -2.9749 30 1 0.7963 1.7233 1.6163 31 1 0.1087 4.1226 -0.3971 32 1 -0.5635 3.2191 0.9939 33 1 -1.9735 5.5119 0.5269 34 1 -1.9819 4.7797 2.1493 35 1 -2.7824 7.1251 2.2278 36 1 -1.2583 6.9400 3.1280 37 1 -1.2500 7.6723 1.5057 38 1 -0.1309 4.4588 3.3690 39 1 0.7648 5.9994 3.2019 40 1 1.2349 2.5436 3.6089 41 1 2.9875 2.6622 3.3224 42 1 2.2045 3.7371 4.5055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309174597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:51 Heat of formation + Delta-G solvation = -4.168119 kcal Electronic energy + Delta-G solvation = -18484.477351 eV Core-core repulsion = 15884.908444 eV Total energy + Delta-G solvation = -2599.568907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.19328 -35.98913 -33.81832 -31.89481 -30.57319 -30.19135 -27.24118 -25.70288 -25.40580 -22.81674 -22.14668 -20.67122 -19.61813 -18.86024 -16.22834 -15.98184 -15.24816 -14.77219 -14.56824 -14.25655 -13.71148 -13.19715 -13.01570 -12.88785 -12.45200 -12.34595 -12.13396 -11.79499 -11.77391 -11.47672 -11.23755 -11.01356 -10.86250 -10.79423 -10.59093 -10.51379 -10.35039 -9.95917 -9.92015 -9.65655 -9.45208 -9.05524 -8.33113 -8.30815 -7.16976 -5.93890 -3.97658 3.34771 3.41251 3.45429 4.17178 4.47840 4.95414 4.98489 5.16389 5.31755 5.34519 5.39693 5.49492 5.57423 5.69797 5.77920 5.86660 5.93108 5.97117 6.05883 6.12272 6.14495 6.16216 6.17547 6.25732 6.39569 6.55168 6.62815 6.78532 6.83381 6.92939 7.08160 7.11662 7.20935 7.25035 7.55259 7.79846 7.95477 8.34768 8.42306 8.78352 9.10675 9.67383 11.11485 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.006536 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.771711 B = 4283.228824 C = 4607.678250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.672 5.672 14 C 0.098 3.902 15 H 0.091 0.909 16 C 0.008 3.992 17 N -0.511 5.511 18 C 0.039 3.961 19 C -0.145 4.145 20 C 0.036 3.964 21 C -0.089 4.089 22 H 0.072 0.928 23 C -0.116 4.116 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.259 0.741 30 H 0.315 0.685 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 7.271 7.899 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.302 5.302 14 C -0.014 4.014 15 H 0.109 0.891 16 C -0.122 4.122 17 N -0.235 5.235 18 C -0.089 4.089 19 C -0.202 4.202 20 C -0.092 4.092 21 C -0.108 4.108 22 H 0.091 0.909 23 C -0.174 4.174 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.257 7.639 7.665 13.030 hybrid contribution -0.386 -0.654 -0.352 0.837 sum -7.643 6.985 7.313 12.676 Atomic orbital electron populations 1.21876 0.99755 0.99635 0.99357 1.21768 0.91073 1.00554 1.03027 1.19189 0.95426 0.89846 0.84469 0.98025 1.21205 0.91268 1.36282 1.04138 0.92071 1.24951 0.97982 0.95725 0.95884 1.69868 1.34617 1.39661 1.09570 0.86566 0.85957 0.78353 0.76911 1.20854 1.21503 1.19990 1.60886 1.35478 1.01389 1.32454 1.22202 0.93721 0.89733 0.95791 0.89128 1.23997 0.98811 0.89835 0.99540 1.65442 1.11882 1.31860 1.14318 1.22213 0.89419 0.96847 1.00460 1.21732 1.00742 0.96900 1.00861 1.23235 0.96039 0.99291 0.90619 1.21941 0.96171 0.96545 0.96177 0.90939 1.21455 1.03083 0.97767 0.95097 0.94458 0.94854 0.93933 0.88282 0.94120 0.93155 0.86635 0.90571 0.94348 0.91131 0.95111 0.92715 0.92868 0.91937 0.94289 0.90972 0.93274 0.91011 0.94978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.65 37.16 0.36 -2.49 16 2 C -0.13 -2.91 5.36 -26.73 -0.14 -3.06 16 3 C 0.22 5.27 1.89 -68.86 -0.13 5.14 16 4 H 0.00 0.06 7.85 -51.92 -0.41 -0.35 16 5 C -0.49 -13.28 8.53 -34.44 -0.29 -13.57 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -25.39 11.29 55.43 0.63 -24.76 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -13.61 4.36 -99.50 -0.43 -14.04 16 14 C 0.10 1.82 3.11 -66.33 -0.21 1.61 16 15 H 0.09 1.96 7.67 -51.93 -0.40 1.56 16 16 C 0.01 0.13 6.16 -2.02 -0.01 0.12 16 17 N -0.51 -7.62 5.38 -229.71 -1.24 -8.86 16 18 C 0.04 0.49 5.54 -3.82 -0.02 0.47 16 19 C -0.14 -1.52 9.97 37.16 0.37 -1.15 16 20 C 0.04 0.51 5.27 -2.18 -0.01 0.50 16 21 C -0.09 -1.41 3.65 -89.23 -0.33 -1.74 16 22 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 23 C -0.12 -1.78 8.11 37.16 0.30 -1.48 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.57 6.64 -51.93 -0.35 0.23 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.32 5.98 5.53 -39.29 -0.22 5.76 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.04 0.63 7.41 -51.93 -0.38 0.25 16 33 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.03 0.38 7.88 -51.93 -0.41 -0.03 16 35 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.05 0.55 7.25 -51.93 -0.38 0.17 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.53 7.54 -51.93 -0.39 0.14 16 39 H 0.07 0.93 7.76 -51.93 -0.40 0.53 16 40 H 0.05 0.75 7.43 -51.93 -0.39 0.37 16 41 H 0.07 1.25 7.95 -51.93 -0.41 0.84 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -27.12 320.68 -9.23 -36.35 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.79 Total: 4.26 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.21 Total: -14.25 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -1.04 Total: -47.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.12 -9.23 -36.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.183 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds