Wall clock time and date at job start Mon Mar 30 2020 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47493 * 2 1 4 4 H 1.09008 * 109.47283 * 305.65404 * 3 2 1 5 5 C 1.50696 * 109.47463 * 185.65020 * 3 2 1 6 6 H 1.07994 * 119.99978 * 240.00009 * 5 3 2 7 7 C 1.37879 * 119.99909 * 59.99981 * 5 3 2 8 8 N 1.31510 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99917 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46866 * 90.00336 * 9 7 5 11 11 H 1.48500 * 109.46983 * 209.99939 * 9 7 5 12 12 H 1.48496 * 109.47136 * 330.00520 * 9 7 5 13 13 N 1.46905 * 109.47148 * 65.64746 * 3 2 1 14 14 C 1.46896 * 111.00006 * 204.90229 * 13 3 2 15 15 H 1.08992 * 110.29097 * 327.77752 * 14 13 3 16 16 C 1.54381 * 110.41025 * 89.96649 * 14 13 3 17 17 N 1.48843 * 104.63394 * 142.78961 * 16 14 13 18 18 C 1.46904 * 111.13430 * 201.00423 * 17 16 14 19 19 C 1.53003 * 109.46912 * 185.19662 * 18 17 16 20 20 C 1.48565 * 104.07953 * 320.54329 * 17 16 14 21 21 C 1.54265 * 110.32335 * 205.64763 * 14 13 3 22 22 H 1.08994 * 110.32605 * 122.10669 * 21 14 13 23 23 C 1.53009 * 110.40832 * 359.94661 * 21 14 13 24 24 H 1.08992 * 109.47448 * 174.51472 * 1 2 3 25 25 H 1.09001 * 109.46911 * 294.51746 * 1 2 3 26 26 H 1.09004 * 109.47286 * 54.51288 * 1 2 3 27 27 H 1.09000 * 109.47121 * 240.00552 * 2 1 3 28 28 H 1.08996 * 109.47370 * 120.00113 * 2 1 3 29 29 H 0.96997 * 120.00172 * 179.97438 * 8 7 5 30 30 H 1.00896 * 110.99691 * 328.86307 * 13 3 2 31 31 H 1.09000 * 110.41100 * 261.56881 * 16 14 13 32 32 H 1.09000 * 110.40940 * 23.88864 * 16 14 13 33 33 H 1.08998 * 109.46840 * 305.19445 * 18 17 16 34 34 H 1.08999 * 109.47076 * 65.19586 * 18 17 16 35 35 H 1.09008 * 109.46669 * 180.02562 * 19 18 17 36 36 H 1.08998 * 109.47190 * 299.99568 * 19 18 17 37 37 H 1.08999 * 109.47312 * 60.00068 * 19 18 17 38 38 H 1.09001 * 110.40819 * 280.63533 * 20 17 16 39 39 H 1.09003 * 110.40957 * 158.30574 * 20 17 16 40 40 H 1.08998 * 109.46753 * 302.85858 * 23 21 14 41 41 H 1.08998 * 109.47242 * 62.85337 * 23 21 14 42 42 H 1.09000 * 109.47181 * 182.85811 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9848 -0.8351 5 6 3.5405 1.4448 -0.1399 6 1 4.1541 1.8864 0.6314 7 6 4.1300 0.8830 -1.2525 8 7 3.3828 0.3457 -2.1920 9 14 5.9900 0.8865 -1.4263 10 1 6.5464 -0.3473 -0.8153 11 1 6.3525 0.9331 -2.8656 12 1 6.5494 2.0764 -0.7360 13 7 1.6649 2.0945 1.2618 14 6 1.5866 3.5523 1.0981 15 1 2.3120 3.8889 0.3575 16 6 0.1605 3.9714 0.6812 17 7 -0.0787 5.2544 1.3969 18 6 -1.5159 5.5345 1.5159 19 6 -1.7160 6.9174 2.1391 20 6 0.5349 5.0426 2.7332 21 6 1.8329 4.2570 2.4481 22 1 2.6791 4.9395 2.3701 23 6 2.0829 3.2258 3.5505 24 1 -0.3634 -1.0229 -0.0982 25 1 -0.3633 0.4265 0.9350 26 1 -0.3634 0.5966 -0.8368 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.7975 -0.0491 -2.9749 30 1 0.7963 1.7233 1.6163 31 1 0.1087 4.1226 -0.3971 32 1 -0.5635 3.2191 0.9939 33 1 -1.9735 5.5119 0.5269 34 1 -1.9819 4.7797 2.1493 35 1 -2.7824 7.1251 2.2278 36 1 -1.2583 6.9400 3.1280 37 1 -1.2500 7.6723 1.5057 38 1 -0.1309 4.4588 3.3690 39 1 0.7648 5.9994 3.2019 40 1 1.2349 2.5436 3.6089 41 1 2.9875 2.6622 3.3224 42 1 2.2045 3.7371 4.5055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309174597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:50 Heat of formation + Delta-G solvation = -20.981298 kcal Electronic energy + Delta-G solvation = -18485.206425 eV Core-core repulsion = 15884.908444 eV Total energy + Delta-G solvation = -2600.297981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.53311 -37.65096 -35.22524 -33.82954 -32.10319 -31.33946 -28.93109 -27.29586 -26.69273 -24.61673 -23.37713 -21.82811 -21.50243 -20.25812 -18.28349 -17.38857 -16.77562 -16.26246 -15.91136 -15.75564 -15.23124 -14.75016 -14.54513 -14.19206 -13.91334 -13.75498 -13.42458 -13.27430 -13.10012 -12.95698 -12.76580 -12.56390 -12.48012 -12.32805 -11.96734 -11.84102 -11.82586 -11.77140 -11.52470 -11.32042 -11.09786 -10.99809 -10.40852 -9.48632 -8.90667 -8.04607 -6.15882 1.41571 1.42449 1.52566 2.45133 3.00331 3.21252 3.65019 3.73197 3.90236 4.15234 4.23594 4.28061 4.44819 4.49377 4.55141 4.57116 4.61071 4.67409 4.70619 4.80480 4.87586 4.93833 4.96778 5.05239 5.08467 5.13689 5.22469 5.30964 5.36962 5.37498 5.49370 5.62469 5.65285 5.77117 5.87540 5.92362 6.13903 6.39983 6.56123 6.98218 7.03007 7.53102 8.98384 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.006536 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.771711 B = 4283.228824 C = 4607.678250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.227 3.773 4 H -0.033 1.033 5 C -0.506 4.506 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.094 3.906 15 H 0.050 0.950 16 C 0.019 3.981 17 N -0.521 5.521 18 C 0.036 3.964 19 C -0.139 4.139 20 C 0.045 3.955 21 C -0.086 4.086 22 H 0.068 0.932 23 C -0.108 4.108 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.259 0.741 30 H 0.326 0.674 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 7.992 9.620 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.545 4.545 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.296 5.296 14 C -0.018 4.018 15 H 0.068 0.932 16 C -0.111 4.111 17 N -0.245 5.245 18 C -0.092 4.092 19 C -0.196 4.196 20 C -0.082 4.082 21 C -0.106 4.106 22 H 0.086 0.914 23 C -0.166 4.166 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.256 8.372 9.403 15.056 hybrid contribution -0.090 -0.837 -0.887 1.223 sum -8.346 7.535 8.516 14.105 Atomic orbital electron populations 1.21731 0.96422 1.01019 1.00266 1.21587 0.94065 0.99149 1.01155 1.18920 0.93834 0.90471 0.84920 1.01510 1.21463 0.92922 1.36150 1.03967 0.93334 1.25647 1.02011 0.95512 0.95674 1.69997 1.36084 1.40165 1.09868 0.85640 0.81177 0.78401 0.76880 1.20197 1.21119 1.19813 1.60791 1.36189 1.02346 1.30280 1.22138 0.94102 0.88793 0.96737 0.93163 1.23732 0.97451 0.91151 0.98798 1.65444 1.13902 1.30353 1.14823 1.22321 0.87646 0.98337 1.00888 1.21694 1.02130 0.95156 1.00637 1.23197 0.94731 1.00000 0.90295 1.21912 0.97453 0.96607 0.94600 0.91365 1.21361 1.01750 0.97473 0.96030 0.92513 0.92570 0.94641 0.91542 0.94462 0.93198 0.85504 0.92395 0.93741 0.91275 0.94422 0.90721 0.92376 0.92529 0.93089 0.89115 0.93134 0.93688 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.65 71.98 0.69 -4.41 16 2 C -0.12 -5.68 5.36 30.59 0.16 -5.52 16 3 C 0.23 11.30 1.89 44.17 0.08 11.38 16 4 H -0.03 -1.83 7.85 -2.38 -0.02 -1.85 16 5 C -0.51 -28.31 8.53 25.60 0.22 -28.09 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.53 5.29 84.66 0.45 0.98 16 8 N -0.92 -53.47 11.29 21.45 0.24 -53.23 16 9 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.67 -27.22 4.36 -468.72 -2.04 -29.27 16 14 C 0.09 3.56 3.11 45.81 0.14 3.70 16 15 H 0.05 2.29 7.67 -2.39 -0.02 2.27 16 16 C 0.02 0.62 6.16 86.39 0.53 1.16 16 17 N -0.52 -14.71 5.38 -880.68 -4.74 -19.45 16 18 C 0.04 0.82 5.54 86.30 0.48 1.30 16 19 C -0.14 -2.49 9.97 71.98 0.72 -1.77 16 20 C 0.05 1.16 5.27 86.45 0.46 1.61 16 21 C -0.09 -2.65 3.65 -9.89 -0.04 -2.69 16 22 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 23 C -0.11 -3.15 8.11 71.99 0.58 -2.56 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.82 6.64 -2.39 -0.02 1.80 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 3.58 5.94 -2.39 -0.01 3.57 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.33 12.05 5.53 -89.70 -0.50 11.56 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.42 7.41 -2.39 -0.02 1.40 16 33 H 0.07 1.58 8.13 -2.39 -0.02 1.56 16 34 H 0.04 0.81 7.88 -2.39 -0.02 0.80 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.06 0.99 7.25 -2.39 -0.02 0.97 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.21 7.54 -2.39 -0.02 1.19 16 39 H 0.09 2.03 7.76 -2.39 -0.02 2.01 16 40 H 0.05 1.44 7.43 -2.39 -0.02 1.42 16 41 H 0.04 1.54 7.95 -2.39 -0.02 1.52 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -59.63 320.68 0.43 -59.20 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.46 Total: 20.81 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 4.48 Total: -24.91 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -6.54 Total: -101.94 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -59.63 0.43 -59.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309174597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.217 kcal (2) G-P(sol) polarization free energy of solvation -59.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds