Wall clock time and date at job start Mon Mar 30 2020 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 N 1.46902 * 109.46904 * 180.86928 * 3 2 1 5 5 C 1.47441 * 111.00039 * 175.41203 * 4 3 2 6 6 C 1.54318 * 107.37627 * 236.66322 * 5 4 3 7 7 C 1.55401 * 102.89551 * 337.89145 * 6 5 4 8 8 H 1.08996 * 110.90989 * 277.37786 * 7 6 5 9 9 N 1.46902 * 111.02614 * 153.63371 * 7 6 5 10 10 C 1.46905 * 110.99774 * 92.81739 * 9 7 6 11 11 H 1.08999 * 109.46871 * 325.74022 * 10 9 7 12 12 C 1.50699 * 109.46601 * 85.73848 * 10 9 7 13 13 H 1.07999 * 120.00150 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99752 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00047 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99996 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47344 * 90.00173 * 16 14 12 18 18 H 1.48496 * 109.47161 * 210.00197 * 16 14 12 19 19 H 1.48502 * 109.46973 * 330.00135 * 16 14 12 20 20 C 1.53001 * 109.46936 * 205.73915 * 10 9 7 21 21 C 1.52992 * 109.47296 * 64.84304 * 20 10 9 22 22 C 1.47849 * 111.00017 * 54.57100 * 4 3 2 23 23 H 1.08991 * 109.47490 * 300.00149 * 1 2 3 24 24 H 1.08997 * 109.47083 * 60.00794 * 1 2 3 25 25 H 1.09007 * 109.46760 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47879 * 239.99549 * 2 1 3 27 27 H 1.09004 * 109.47423 * 119.99418 * 2 1 3 28 28 H 1.08998 * 109.47682 * 60.87048 * 3 2 1 29 29 H 1.09002 * 109.46771 * 300.86504 * 3 2 1 30 30 H 1.09004 * 109.88762 * 356.15232 * 5 4 3 31 31 H 1.09001 * 109.89362 * 117.17003 * 5 4 3 32 32 H 1.09002 * 110.70784 * 96.17805 * 6 5 4 33 33 H 1.08996 * 110.70702 * 219.41957 * 6 5 4 34 34 H 1.00901 * 111.00111 * 216.77740 * 9 7 6 35 35 H 0.96994 * 120.00546 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46679 * 184.85063 * 20 10 9 37 37 H 1.09010 * 109.47035 * 304.84274 * 20 10 9 38 38 H 1.08996 * 109.47077 * 64.29826 * 21 20 10 39 39 H 1.08997 * 109.46893 * 184.29370 * 21 20 10 40 40 H 1.09002 * 109.47234 * 304.29487 * 21 20 10 41 41 H 1.08997 * 110.37484 * 265.18751 * 22 4 3 42 42 H 1.08997 * 110.37586 * 27.42219 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4426 -0.0210 5 6 4.0356 2.8153 -0.1317 6 6 4.9385 2.8629 -1.3822 7 6 5.3223 1.3714 -1.5899 8 1 6.1572 1.0915 -0.9476 9 7 5.6321 1.0982 -2.9997 10 6 7.0707 1.2423 -3.2601 11 1 7.4751 2.0383 -2.6348 12 6 7.7712 -0.0530 -2.9400 13 1 7.2045 -0.8985 -2.5788 14 6 9.1356 -0.1587 -3.1082 15 7 9.8257 0.8711 -3.5475 16 14 10.0039 -1.7645 -2.7121 17 1 10.0382 -2.6209 -3.9247 18 1 11.3919 -1.4801 -2.2675 19 1 9.2717 -2.4690 -1.6291 20 6 7.2898 1.5901 -4.7338 21 6 6.6820 2.9626 -5.0298 22 6 4.0225 0.6482 -1.1572 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6894 1.9519 0.8976 29 1 1.6639 1.9608 -0.8822 30 1 3.2120 3.5208 -0.2420 31 1 4.6182 3.0617 0.7560 32 1 4.3862 3.2416 -2.2423 33 1 5.8249 3.4689 -1.1947 34 1 5.3053 0.1829 -3.2709 35 1 10.7856 0.7969 -3.6655 36 1 8.3586 1.6123 -4.9467 37 1 6.8102 0.8376 -5.3599 38 1 7.2129 3.7254 -4.4603 39 1 6.7705 3.1770 -6.0948 40 1 5.6298 2.9630 -4.7452 41 1 4.2431 -0.3706 -0.8389 42 1 3.3000 0.6420 -1.9733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328367584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:32 Heat of formation + Delta-G solvation = -14.886624 kcal Electronic energy + Delta-G solvation = -18046.722074 eV Core-core repulsion = 15446.688378 eV Total energy + Delta-G solvation = -2600.033696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.95602 -35.98957 -34.12686 -32.16419 -31.05203 -29.43138 -27.87703 -25.90824 -24.82423 -22.71391 -21.60537 -20.44816 -19.78256 -19.29525 -16.54445 -15.79678 -15.67392 -15.10605 -14.63374 -13.87302 -13.60123 -13.40327 -13.09966 -12.99537 -12.78293 -12.42808 -12.11648 -11.76992 -11.46332 -11.34676 -11.15136 -11.09426 -10.97097 -10.76390 -10.67540 -10.65285 -10.46905 -10.17340 -10.04186 -9.57630 -9.45069 -9.03583 -8.36708 -8.09571 -7.28492 -5.99078 -4.12005 3.27643 3.34917 3.37786 4.13402 4.40387 4.85486 4.98942 5.08982 5.21531 5.25679 5.28590 5.39828 5.51175 5.60528 5.68051 5.73150 5.80249 5.92397 5.96456 6.11636 6.15699 6.25038 6.28900 6.39737 6.42570 6.52383 6.57159 6.71910 6.81025 7.13177 7.15492 7.19886 7.30066 7.46588 7.60751 7.78625 8.09427 8.15862 8.34575 8.66447 9.00635 9.55785 11.01133 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.005920 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.300557 B = 4728.747709 C = 5317.030139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.053 3.947 4 N -0.530 5.530 5 C 0.043 3.957 6 C -0.129 4.129 7 C 0.086 3.914 8 H 0.063 0.937 9 N -0.680 5.680 10 C 0.216 3.784 11 H 0.032 0.968 12 C -0.545 4.545 13 H 0.053 0.947 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.106 4.106 21 C -0.137 4.137 22 C 0.042 3.958 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.328 0.672 35 H 0.261 0.739 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.035 0.965 39 H 0.024 0.976 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.376 1.736 4.834 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.075 4.075 4 N -0.255 5.255 5 C -0.085 4.085 6 C -0.168 4.168 7 C -0.025 4.025 8 H 0.081 0.919 9 N -0.310 5.310 10 C 0.108 3.892 11 H 0.050 0.950 12 C -0.584 4.584 13 H 0.071 0.929 14 C -0.135 4.135 15 N -0.523 5.523 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.145 4.145 21 C -0.195 4.195 22 C -0.086 4.086 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.172 2.228 5.055 14.283 hybrid contribution 0.682 -1.318 -0.115 1.488 sum -12.489 0.910 4.940 13.462 Atomic orbital electron populations 1.21730 0.95867 1.01573 1.01577 1.21591 0.95247 0.96670 1.02844 1.22310 0.88070 0.96901 1.00259 1.63596 1.07351 1.11440 1.43098 1.22788 0.97765 0.89176 0.98745 1.22812 0.99182 0.98185 0.96607 1.22511 0.95199 0.93297 0.91503 0.91930 1.60911 1.20092 1.34136 1.15857 1.19165 0.81330 0.95478 0.93180 0.94983 1.21870 0.93124 0.98756 1.44645 0.92872 1.24926 0.97531 0.96225 0.94794 1.69875 1.07257 1.29571 1.45642 0.86659 0.78987 0.84102 0.78631 1.20671 1.21212 1.20045 1.21495 1.02242 0.93073 0.97650 1.21708 1.00683 0.99173 0.97934 1.23191 0.96437 0.97691 0.91325 0.92844 0.92924 0.92684 0.91696 0.91296 0.91254 0.95072 0.93375 0.90947 0.91217 0.91372 0.85503 0.92899 0.89183 0.95182 0.94590 0.95722 0.93233 0.90845 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.13 -1.40 5.74 -26.73 -0.15 -1.55 16 3 C 0.05 0.65 4.62 -3.82 -0.02 0.63 16 4 N -0.53 -7.82 5.27 -231.24 -1.22 -9.04 16 5 C 0.04 0.62 6.89 -2.84 -0.02 0.60 16 6 C -0.13 -2.14 6.67 -24.77 -0.17 -2.31 16 7 C 0.09 1.62 3.12 -65.43 -0.20 1.41 16 8 H 0.06 1.36 7.74 -51.93 -0.40 0.96 16 9 N -0.68 -14.01 5.54 -98.57 -0.55 -14.55 16 10 C 0.22 5.29 1.84 -68.86 -0.13 5.16 16 11 H 0.03 0.88 7.85 -51.93 -0.41 0.47 16 12 C -0.54 -14.57 8.37 -34.44 -0.29 -14.86 16 13 H 0.05 1.42 7.73 -52.49 -0.41 1.01 16 14 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 15 N -0.89 -24.96 11.29 55.43 0.63 -24.33 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 21 C -0.14 -2.84 9.85 37.15 0.37 -2.47 16 22 C 0.04 0.66 4.72 -2.29 -0.01 0.65 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.77 6.73 -51.93 -0.35 0.42 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.05 0.62 7.56 -51.93 -0.39 0.22 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.33 6.70 8.11 -39.29 -0.32 6.38 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 37 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.98 7.63 -51.93 -0.40 0.59 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.05 0.78 7.35 -51.93 -0.38 0.40 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -27.02 326.20 -9.73 -36.75 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.99 Total: 4.78 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.49 Total: -14.63 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -1.14 Total: -47.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.02 -9.73 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328367584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.860 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds