Wall clock time and date at job start Mon Mar 30 2020 03:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 N 1.46902 * 109.46904 * 180.86928 * 3 2 1 5 5 C 1.47441 * 111.00039 * 175.41203 * 4 3 2 6 6 C 1.54318 * 107.37627 * 236.66322 * 5 4 3 7 7 C 1.55401 * 102.89551 * 337.89145 * 6 5 4 8 8 H 1.08996 * 110.90989 * 277.37786 * 7 6 5 9 9 N 1.46902 * 111.02614 * 153.63371 * 7 6 5 10 10 C 1.46905 * 110.99774 * 92.81739 * 9 7 6 11 11 H 1.08999 * 109.46871 * 325.74022 * 10 9 7 12 12 C 1.50699 * 109.46601 * 85.73848 * 10 9 7 13 13 H 1.07999 * 120.00150 * 359.97438 * 12 10 9 14 14 C 1.37879 * 119.99752 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00047 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 119.99996 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47344 * 90.00173 * 16 14 12 18 18 H 1.48496 * 109.47161 * 210.00197 * 16 14 12 19 19 H 1.48502 * 109.46973 * 330.00135 * 16 14 12 20 20 C 1.53001 * 109.46936 * 205.73915 * 10 9 7 21 21 C 1.52992 * 109.47296 * 64.84304 * 20 10 9 22 22 C 1.47849 * 111.00017 * 54.57100 * 4 3 2 23 23 H 1.08991 * 109.47490 * 300.00149 * 1 2 3 24 24 H 1.08997 * 109.47083 * 60.00794 * 1 2 3 25 25 H 1.09007 * 109.46760 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47879 * 239.99549 * 2 1 3 27 27 H 1.09004 * 109.47423 * 119.99418 * 2 1 3 28 28 H 1.08998 * 109.47682 * 60.87048 * 3 2 1 29 29 H 1.09002 * 109.46771 * 300.86504 * 3 2 1 30 30 H 1.09004 * 109.88762 * 356.15232 * 5 4 3 31 31 H 1.09001 * 109.89362 * 117.17003 * 5 4 3 32 32 H 1.09002 * 110.70784 * 96.17805 * 6 5 4 33 33 H 1.08996 * 110.70702 * 219.41957 * 6 5 4 34 34 H 1.00901 * 111.00111 * 216.77740 * 9 7 6 35 35 H 0.96994 * 120.00546 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.46679 * 184.85063 * 20 10 9 37 37 H 1.09010 * 109.47035 * 304.84274 * 20 10 9 38 38 H 1.08996 * 109.47077 * 64.29826 * 21 20 10 39 39 H 1.08997 * 109.46893 * 184.29370 * 21 20 10 40 40 H 1.09002 * 109.47234 * 304.29487 * 21 20 10 41 41 H 1.08997 * 110.37484 * 265.18751 * 22 4 3 42 42 H 1.08997 * 110.37586 * 27.42219 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5088 1.4426 -0.0210 5 6 4.0356 2.8153 -0.1317 6 6 4.9385 2.8629 -1.3822 7 6 5.3223 1.3714 -1.5899 8 1 6.1572 1.0915 -0.9476 9 7 5.6321 1.0982 -2.9997 10 6 7.0707 1.2423 -3.2601 11 1 7.4751 2.0383 -2.6348 12 6 7.7712 -0.0530 -2.9400 13 1 7.2045 -0.8985 -2.5788 14 6 9.1356 -0.1587 -3.1082 15 7 9.8257 0.8711 -3.5475 16 14 10.0039 -1.7645 -2.7121 17 1 10.0382 -2.6209 -3.9247 18 1 11.3919 -1.4801 -2.2675 19 1 9.2717 -2.4690 -1.6291 20 6 7.2898 1.5901 -4.7338 21 6 6.6820 2.9626 -5.0298 22 6 4.0225 0.6482 -1.1572 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 1.6894 1.9519 0.8976 29 1 1.6639 1.9608 -0.8822 30 1 3.2120 3.5208 -0.2420 31 1 4.6182 3.0617 0.7560 32 1 4.3862 3.2416 -2.2423 33 1 5.8249 3.4689 -1.1947 34 1 5.3053 0.1829 -3.2709 35 1 10.7856 0.7969 -3.6655 36 1 8.3586 1.6123 -4.9467 37 1 6.8102 0.8376 -5.3599 38 1 7.2129 3.7254 -4.4603 39 1 6.7705 3.1770 -6.0948 40 1 5.6298 2.9630 -4.7452 41 1 4.2431 -0.3706 -0.8389 42 1 3.3000 0.6420 -1.9733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328367584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:32 Heat of formation + Delta-G solvation = -31.761174 kcal Electronic energy + Delta-G solvation = -18047.453809 eV Core-core repulsion = 15446.688378 eV Total energy + Delta-G solvation = -2600.765431 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24954 -37.68383 -35.35679 -33.96184 -32.71771 -30.68061 -29.41320 -27.63542 -25.97571 -24.56374 -22.68986 -21.82138 -21.18692 -20.99647 -18.60362 -17.17497 -16.90606 -16.65237 -16.08312 -15.31274 -15.26803 -14.77719 -14.50815 -14.33926 -14.16918 -13.57467 -13.47275 -13.31924 -13.10153 -12.92947 -12.68270 -12.65590 -12.37835 -12.25047 -12.14987 -11.89370 -11.77154 -11.56796 -11.50807 -11.47267 -11.29337 -10.96460 -10.45716 -9.26328 -9.08480 -8.06108 -6.28057 1.37720 1.39308 1.48173 2.39805 2.96321 3.14458 3.67722 3.78376 3.86390 4.13207 4.17013 4.33016 4.37946 4.50129 4.60559 4.63405 4.69248 4.74899 4.76921 4.82331 4.90647 4.94129 4.95813 5.03240 5.16851 5.19701 5.21571 5.29906 5.34121 5.42195 5.42880 5.53400 5.64669 5.77963 5.97060 6.11581 6.17307 6.22818 6.39460 6.81354 7.00870 7.43520 8.90736 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.005920 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.300557 B = 4728.747709 C = 5317.030139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.053 3.947 4 N -0.540 5.540 5 C 0.049 3.951 6 C -0.123 4.123 7 C 0.081 3.919 8 H 0.025 0.975 9 N -0.668 5.668 10 C 0.226 3.774 11 H -0.003 1.003 12 C -0.559 4.559 13 H 0.049 0.951 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 0.950 3.050 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.102 4.102 21 C -0.125 4.125 22 C 0.057 3.943 23 H 0.062 0.938 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.330 0.670 35 H 0.262 0.738 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.122 1.560 5.155 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.075 4.075 4 N -0.265 5.265 5 C -0.079 4.079 6 C -0.162 4.162 7 C -0.031 4.031 8 H 0.044 0.956 9 N -0.297 5.297 10 C 0.117 3.883 11 H 0.015 0.985 12 C -0.599 4.599 13 H 0.067 0.933 14 C -0.179 4.179 15 N -0.550 5.550 16 Si 0.776 3.224 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.141 4.141 21 C -0.182 4.182 22 C -0.071 4.071 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.147 0.853 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.938 2.053 5.380 16.009 hybrid contribution 1.211 -1.249 -0.187 1.750 sum -13.726 0.804 5.194 14.698 Atomic orbital electron populations 1.21692 0.94085 1.02283 1.02209 1.21570 0.96772 0.95776 1.02052 1.22411 0.86189 0.97823 1.01084 1.63604 1.09229 1.11396 1.42251 1.22760 0.98048 0.89618 0.97434 1.22733 0.99248 0.96172 0.98025 1.22518 0.95430 0.95526 0.89607 0.95642 1.60865 1.17513 1.34103 1.17249 1.18902 0.83091 0.93389 0.92908 0.98488 1.22175 0.93668 0.99491 1.44529 0.93294 1.25650 0.98297 0.99212 0.94774 1.70003 1.07406 1.31235 1.46343 0.85693 0.77785 0.80458 0.78504 1.19970 1.20943 1.19831 1.21358 1.00589 0.95095 0.97086 1.21561 1.00685 0.96750 0.99224 1.22975 0.94917 0.97234 0.92014 0.91879 0.92607 0.92004 0.92740 0.91872 0.89800 0.94709 0.91014 0.90718 0.90963 0.92612 0.85339 0.92899 0.92151 0.95280 0.95240 0.93604 0.92278 0.91426 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 71.98 0.71 -1.52 16 2 C -0.12 -2.50 5.74 30.60 0.18 -2.32 16 3 C 0.05 1.15 4.62 86.30 0.40 1.55 16 4 N -0.54 -15.03 5.27 -885.51 -4.67 -19.70 16 5 C 0.05 1.33 6.89 86.65 0.60 1.93 16 6 C -0.12 -4.02 6.67 31.87 0.21 -3.81 16 7 C 0.08 3.05 3.12 46.40 0.14 3.20 16 8 H 0.03 1.16 7.74 -2.39 -0.02 1.14 16 9 N -0.67 -27.71 5.54 -465.75 -2.58 -30.29 16 10 C 0.23 11.32 1.84 44.17 0.08 11.40 16 11 H 0.00 -0.16 7.85 -2.39 -0.02 -0.18 16 12 C -0.56 -30.54 8.37 25.60 0.21 -30.33 16 13 H 0.05 2.65 7.73 -2.91 -0.02 2.63 16 14 C 0.02 1.14 5.29 84.65 0.45 1.59 16 15 N -0.91 -52.43 11.29 21.45 0.24 -52.19 16 16 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 C -0.10 -4.95 5.45 30.59 0.17 -4.79 16 21 C -0.12 -5.05 9.85 71.98 0.71 -4.35 16 22 C 0.06 1.77 4.72 86.78 0.41 2.18 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 26 H 0.05 1.20 6.73 -2.39 -0.02 1.19 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.03 0.75 8.11 -2.39 -0.02 0.74 16 30 H 0.07 1.62 7.56 -2.39 -0.02 1.60 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.33 13.46 8.11 -89.69 -0.73 12.74 16 35 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.06 3.29 5.95 -2.39 -0.01 3.28 16 37 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 2.26 7.63 -2.39 -0.02 2.24 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.06 1.71 7.35 -2.39 -0.02 1.70 16 Total: -1.00 -58.04 326.20 -0.48 -58.52 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.23 Total: 23.13 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.27 Total: -25.27 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -7.01 Total: -102.18 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -58.04 -0.48 -58.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328367584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.763 kcal (2) G-P(sol) polarization free energy of solvation -58.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds