Wall clock time and date at job start Mon Mar 30 2020 03:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47293 * 2 1 4 4 N 1.46900 * 109.47372 * 179.97438 * 3 2 1 5 5 C 1.48538 * 110.99894 * 287.39462 * 4 3 2 6 6 C 1.54934 * 103.22672 * 200.27612 * 5 4 3 7 7 C 1.54604 * 102.92191 * 37.41555 * 6 5 4 8 8 H 1.09001 * 110.38739 * 97.00138 * 7 6 5 9 9 N 1.46903 * 110.30671 * 219.12384 * 7 6 5 10 10 C 1.46890 * 111.00093 * 271.88236 * 9 7 6 11 11 H 1.09006 * 109.47528 * 34.47107 * 10 9 7 12 12 C 1.50705 * 109.47165 * 274.47594 * 10 9 7 13 13 H 1.07995 * 119.99793 * 359.97438 * 12 10 9 14 14 C 1.37881 * 120.00059 * 180.02562 * 12 10 9 15 15 N 1.31510 * 119.99856 * 179.97438 * 14 12 10 16 16 Si 1.86795 * 120.00037 * 359.97438 * 14 12 10 17 17 H 1.48508 * 109.47022 * 89.99954 * 16 14 12 18 18 H 1.48497 * 109.47413 * 210.00007 * 16 14 12 19 19 H 1.48500 * 109.47331 * 330.00253 * 16 14 12 20 20 C 1.52993 * 109.47354 * 154.47482 * 10 9 7 21 21 C 1.53001 * 109.47299 * 295.14217 * 20 10 9 22 22 C 1.47898 * 111.00195 * 169.99781 * 4 3 2 23 23 H 1.09003 * 109.46934 * 60.00416 * 1 2 3 24 24 H 1.08998 * 109.47484 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47557 * 300.00308 * 1 2 3 26 26 H 1.08997 * 109.47557 * 239.99692 * 2 1 3 27 27 H 1.09003 * 109.46934 * 119.99584 * 2 1 3 28 28 H 1.09006 * 109.47440 * 59.99879 * 3 2 1 29 29 H 1.09004 * 109.47212 * 300.00005 * 3 2 1 30 30 H 1.08992 * 110.66461 * 318.71242 * 5 4 3 31 31 H 1.09001 * 110.66622 * 81.84419 * 5 4 3 32 32 H 1.09000 * 110.72520 * 279.05721 * 6 5 4 33 33 H 1.08997 * 110.72524 * 155.77151 * 6 5 4 34 34 H 1.00899 * 110.99779 * 147.92487 * 9 7 6 35 35 H 0.96994 * 120.00070 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.47745 * 175.13816 * 20 10 9 37 37 H 1.09000 * 109.47474 * 55.13757 * 20 10 9 38 38 H 1.09008 * 109.46906 * 296.03590 * 21 20 10 39 39 H 1.08993 * 109.47359 * 56.03320 * 21 20 10 40 40 H 1.09002 * 109.47505 * 176.04068 * 21 20 10 41 41 H 1.09003 * 109.91972 * 26.49331 * 22 4 3 42 42 H 1.08995 * 110.08607 * 265.28639 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0407 1.0281 1.3242 6 6 5.4886 1.5795 1.3130 7 6 5.3380 2.9313 0.5779 8 1 5.2538 3.7468 1.2962 9 7 6.4823 3.1560 -0.3155 10 6 7.5809 3.8248 0.3942 11 1 7.6075 3.4818 1.4285 12 6 7.3636 5.3158 0.3650 13 1 6.4964 5.7255 -0.1314 14 6 8.2725 6.1570 0.9713 15 7 8.0831 7.4581 0.9454 16 14 9.7728 5.4484 1.8293 17 1 10.8931 5.3420 0.8602 18 1 10.1698 6.3395 2.9488 19 1 9.4485 4.1002 2.3608 20 6 8.9082 3.4895 -0.2888 21 6 9.1874 1.9913 -0.1530 22 6 4.0391 2.8022 -0.2392 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.4628 1.4809 2.1298 31 1 4.0435 -0.0582 1.4148 32 1 6.1512 0.9123 0.7617 33 1 5.8513 1.7316 2.3296 34 1 6.2062 3.6811 -1.1316 35 1 8.7223 8.0498 1.3721 36 1 9.7127 4.0533 0.1837 37 1 8.8506 3.7540 -1.3446 38 1 9.3149 1.7394 0.8999 39 1 8.3498 1.4270 -0.5627 40 1 10.0966 1.7401 -0.6993 41 1 3.3158 3.5468 0.0933 42 1 4.2523 2.9393 -1.2993 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328367586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:34 Heat of formation + Delta-G solvation = -5.828270 kcal Electronic energy + Delta-G solvation = -18021.874817 eV Core-core repulsion = 15422.233920 eV Total energy + Delta-G solvation = -2599.640896 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.96730 -36.25987 -34.24641 -32.14621 -31.48719 -29.73139 -27.95813 -26.25827 -24.75255 -22.45440 -21.91029 -20.55071 -19.94828 -19.59235 -16.90188 -15.80053 -15.65605 -15.17751 -14.84541 -14.24870 -13.66482 -13.46649 -13.36313 -13.10775 -12.71940 -12.37690 -12.28249 -11.86824 -11.74933 -11.73238 -11.32019 -11.22135 -11.06112 -10.86700 -10.73350 -10.63964 -10.50655 -10.32153 -10.08331 -9.72729 -9.43613 -9.19215 -8.57972 -8.25034 -7.33161 -6.13530 -4.14412 3.25894 3.36184 3.38779 4.11637 4.36703 4.81486 4.95238 5.00019 5.09982 5.20046 5.23374 5.30861 5.45478 5.53237 5.64380 5.68030 5.73175 5.88921 5.97749 6.02917 6.07139 6.09498 6.10690 6.18307 6.22811 6.28337 6.34351 6.46544 6.63420 6.72392 6.76828 7.01312 7.12621 7.14660 7.23471 7.32441 7.57717 8.07937 8.39670 8.50571 8.89173 9.50382 10.99432 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036997 B = 0.005385 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.642529 B = 5198.263595 C = 5554.846430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.045 3.955 4 N -0.513 5.513 5 C 0.036 3.964 6 C -0.112 4.112 7 C 0.084 3.916 8 H 0.055 0.945 9 N -0.668 5.668 10 C 0.183 3.817 11 H 0.031 0.969 12 C -0.546 4.546 13 H 0.071 0.929 14 C 0.073 3.927 15 N -0.899 5.899 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.299 1.299 19 H -0.265 1.265 20 C -0.115 4.115 21 C -0.144 4.144 22 C 0.039 3.961 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.335 0.665 35 H 0.264 0.736 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.039 0.961 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.465 -13.259 -0.279 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.084 4.084 4 N -0.237 5.237 5 C -0.092 4.092 6 C -0.151 4.151 7 C -0.028 4.028 8 H 0.073 0.927 9 N -0.299 5.299 10 C 0.074 3.926 11 H 0.049 0.951 12 C -0.585 4.585 13 H 0.090 0.910 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.227 1.227 19 H -0.190 1.190 20 C -0.153 4.153 21 C -0.201 4.201 22 C -0.089 4.089 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.152 0.848 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.984 -14.064 -0.550 16.697 hybrid contribution 0.229 1.465 1.212 1.915 sum -8.755 -12.599 0.662 15.356 Atomic orbital electron populations 1.21748 0.95976 1.01507 1.01673 1.21460 0.94938 0.96581 1.02568 1.22325 0.88473 0.96988 1.00583 1.64716 1.06844 1.23305 1.28868 1.23241 0.95872 1.00311 0.89769 1.22574 0.95353 0.97280 0.99906 1.22192 0.89628 0.96378 0.94568 0.92681 1.60872 1.07433 1.53018 1.08531 1.19594 0.87555 0.92442 0.93035 0.95069 1.21769 1.10087 0.90107 1.36509 0.91048 1.25010 0.97942 0.94659 0.95408 1.69916 1.36793 1.02627 1.44317 0.86806 0.83425 0.78920 0.78792 1.20436 1.22684 1.18951 1.21798 0.98335 0.94043 1.01114 1.21745 1.00184 0.98252 0.99930 1.23033 0.95840 0.88742 1.01314 0.92745 0.92723 0.92987 0.91226 0.92198 0.94977 0.91134 0.94346 0.90582 0.89856 0.91986 0.84750 0.92661 0.93882 0.92453 0.94409 0.91599 0.94901 0.94236 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.19 6.02 -26.74 -0.16 -1.35 16 3 C 0.04 0.53 4.71 -3.83 -0.02 0.52 16 4 N -0.51 -7.27 5.24 -230.46 -1.21 -8.48 16 5 C 0.04 0.49 5.91 -1.90 -0.01 0.48 16 6 C -0.11 -1.79 6.67 -24.87 -0.17 -1.95 16 7 C 0.08 1.51 3.09 -66.35 -0.20 1.30 16 8 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 9 N -0.67 -13.23 5.41 -99.53 -0.54 -13.77 16 10 C 0.18 4.22 1.42 -68.87 -0.10 4.12 16 11 H 0.03 0.76 6.85 -51.93 -0.36 0.41 16 12 C -0.55 -14.93 8.90 -34.44 -0.31 -15.23 16 13 H 0.07 2.12 7.98 -52.49 -0.42 1.70 16 14 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 15 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 16 Si 0.89 22.04 24.41 -169.99 -4.15 17.89 16 17 H -0.28 -6.73 6.83 56.52 0.39 -6.34 16 18 H -0.30 -7.44 7.11 56.52 0.40 -7.03 16 19 H -0.26 -6.30 6.53 56.52 0.37 -5.94 16 20 C -0.11 -2.51 5.11 -26.73 -0.14 -2.65 16 21 C -0.14 -2.66 9.85 37.16 0.37 -2.30 16 22 C 0.04 0.61 6.36 -2.75 -0.02 0.59 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.61 7.37 -51.93 -0.38 0.22 16 28 H 0.03 0.38 7.83 -51.93 -0.41 -0.02 16 29 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.04 0.51 7.81 -51.93 -0.41 0.10 16 31 H 0.08 0.94 7.80 -51.93 -0.41 0.53 16 32 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.33 6.70 7.72 -39.29 -0.30 6.40 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.04 1.00 3.21 -51.93 -0.17 0.84 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.06 1.18 7.64 -51.93 -0.40 0.79 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.04 0.61 7.77 -51.93 -0.40 0.21 16 42 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -28.69 319.65 -8.63 -37.32 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.84 Total: 4.14 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.48 Total: -15.40 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.97 Total: -48.77 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.15 Total: 17.89 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.69 -8.63 -37.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328367586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.489 kcal (2) G-P(sol) polarization free energy of solvation -28.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds