Wall clock time and date at job start Mon Mar 30 2020 03:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47298 * 2 1 4 4 N 1.46895 * 109.47364 * 180.02562 * 3 2 1 5 5 C 1.47850 * 110.99879 * 49.15702 * 4 3 2 6 6 C 1.54910 * 104.79553 * 146.36527 * 5 4 3 7 7 C 1.55148 * 101.65220 * 322.93136 * 6 5 4 8 8 H 1.09003 * 110.70029 * 277.26821 * 7 6 5 9 9 N 1.46892 * 110.70567 * 154.03966 * 7 6 5 10 10 C 1.46900 * 111.00220 * 91.53663 * 9 7 6 11 11 H 1.08997 * 109.47456 * 347.77922 * 10 9 7 12 12 C 1.50707 * 109.47055 * 227.77764 * 10 9 7 13 13 H 1.08000 * 119.99888 * 0.02562 * 12 10 9 14 14 C 1.37871 * 119.99940 * 179.97438 * 12 10 9 15 15 N 1.31518 * 120.00195 * 179.97438 * 14 12 10 16 16 Si 1.86800 * 120.00143 * 0.02562 * 14 12 10 17 17 H 1.48497 * 109.47229 * 89.99554 * 16 14 12 18 18 H 1.48503 * 109.46981 * 209.99990 * 16 14 12 19 19 H 1.48504 * 109.46861 * 329.99548 * 16 14 12 20 20 C 1.53005 * 109.47106 * 107.78151 * 10 9 7 21 21 C 1.53001 * 109.46812 * 294.69631 * 20 10 9 22 22 C 1.47446 * 110.99956 * 170.00005 * 4 3 2 23 23 H 1.08996 * 109.47053 * 60.00337 * 1 2 3 24 24 H 1.09005 * 109.46928 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47051 * 299.99965 * 1 2 3 26 26 H 1.09008 * 109.47082 * 240.00092 * 2 1 3 27 27 H 1.09003 * 109.47209 * 120.00513 * 2 1 3 28 28 H 1.08998 * 109.47041 * 60.00029 * 3 2 1 29 29 H 1.09004 * 109.46731 * 300.00075 * 3 2 1 30 30 H 1.08999 * 110.37333 * 265.19093 * 5 4 3 31 31 H 1.08990 * 110.37476 * 27.42683 * 5 4 3 32 32 H 1.09004 * 110.99022 * 81.01727 * 6 5 4 33 33 H 1.08996 * 110.99138 * 204.79896 * 6 5 4 34 34 H 1.00899 * 111.00376 * 327.58009 * 9 7 6 35 35 H 0.96995 * 120.00279 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47050 * 54.69962 * 20 10 9 37 37 H 1.08999 * 109.47070 * 174.69853 * 20 10 9 38 38 H 1.09004 * 109.46952 * 181.15484 * 21 20 10 39 39 H 1.08996 * 109.47157 * 301.15717 * 21 20 10 40 40 H 1.09006 * 109.46848 * 61.15898 * 21 20 10 41 41 H 1.08991 * 109.88776 * 356.14554 * 22 4 3 42 42 H 1.08997 * 109.89050 * 117.33970 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0384 0.5399 -1.0452 6 6 5.3441 1.2183 -1.5295 7 6 4.9552 2.7194 -1.4776 8 1 4.4134 3.0084 -2.3782 9 7 6.1469 3.5586 -1.2949 10 6 6.7013 3.9749 -2.5900 11 1 6.2367 3.3950 -3.3875 12 6 8.1897 3.7387 -2.5987 13 1 8.6751 3.3207 -1.7292 14 6 8.9314 4.0552 -3.7169 15 7 10.2304 3.8496 -3.7243 16 14 8.0917 4.7776 -5.2210 17 1 8.0772 6.2588 -5.1164 18 1 8.8330 4.3748 -6.4431 19 1 6.6971 4.2732 -5.2994 20 6 6.4197 5.4626 -2.8108 21 6 4.9108 5.6832 -2.9340 22 6 4.0372 2.7981 -0.2397 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 4.2545 -0.4420 -0.6243 31 1 3.3274 0.4519 -1.8665 32 1 6.1698 1.0053 -0.8506 33 1 5.5888 0.9127 -2.5467 34 1 6.8425 3.0830 -0.7399 35 1 10.7523 4.0726 -4.5109 36 1 6.8027 6.0342 -1.9654 37 1 6.9112 5.7935 -3.7257 38 1 4.7114 6.7400 -3.1118 39 1 4.5245 5.0955 -3.7667 40 1 4.4214 5.3713 -2.0113 41 1 3.2154 3.4879 -0.4308 42 1 4.6100 3.1309 0.6259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328367589.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:37 Heat of formation + Delta-G solvation = -24.307616 kcal Electronic energy + Delta-G solvation = -18112.152616 eV Core-core repulsion = 15511.710395 eV Total energy + Delta-G solvation = -2600.442221 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.38989 -37.93321 -35.40621 -34.14956 -32.79897 -30.82041 -29.83265 -27.87655 -25.78818 -24.27934 -23.12509 -21.65899 -21.61119 -21.10987 -18.92668 -17.42202 -16.85385 -16.83821 -16.02842 -15.52139 -15.11303 -14.90586 -14.49740 -14.32905 -14.26084 -14.06940 -13.68117 -13.34783 -13.17076 -13.10389 -12.80329 -12.68091 -12.46816 -12.26366 -12.19725 -12.08997 -11.78908 -11.63904 -11.57797 -11.52866 -11.20061 -11.04653 -10.72507 -9.24953 -9.05293 -8.33503 -6.37901 1.28752 1.32419 1.42990 2.28333 2.99580 3.02859 3.42669 3.80682 3.87076 4.05833 4.13420 4.23781 4.36948 4.38535 4.44363 4.44949 4.52477 4.60505 4.62648 4.75301 4.82512 4.86539 4.90194 4.93217 5.06430 5.11145 5.14519 5.16828 5.20774 5.27125 5.33729 5.36231 5.42207 5.53044 5.68122 5.98779 6.03725 6.19649 6.47089 6.64012 6.84144 7.29417 8.82572 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037366 B = 0.005447 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.154480 B = 5139.181014 C = 5388.114647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.049 3.951 4 N -0.538 5.538 5 C 0.054 3.946 6 C -0.158 4.158 7 C 0.071 3.929 8 H 0.072 0.928 9 N -0.665 5.665 10 C 0.196 3.804 11 H 0.004 0.996 12 C -0.531 4.531 13 H 0.040 0.960 14 C 0.017 3.983 15 N -0.945 5.945 16 Si 0.949 3.051 17 H -0.267 1.267 18 H -0.299 1.299 19 H -0.250 1.250 20 C -0.117 4.117 21 C -0.138 4.138 22 C 0.061 3.939 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.337 0.663 35 H 0.266 0.734 36 H 0.055 0.945 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.379 -4.715 4.389 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.078 4.078 4 N -0.263 5.263 5 C -0.073 4.073 6 C -0.198 4.198 7 C -0.040 4.040 8 H 0.090 0.910 9 N -0.295 5.295 10 C 0.086 3.914 11 H 0.022 0.978 12 C -0.570 4.570 13 H 0.058 0.942 14 C -0.181 4.181 15 N -0.585 5.585 16 Si 0.776 3.224 17 H -0.193 1.193 18 H -0.227 1.227 19 H -0.174 1.174 20 C -0.155 4.155 21 C -0.195 4.195 22 C -0.067 4.067 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.156 0.844 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.441 -4.278 4.887 20.497 hybrid contribution 0.769 -0.205 -1.851 2.015 sum -18.672 -4.483 3.036 19.441 Atomic orbital electron populations 1.21709 0.94394 1.02315 1.02081 1.21600 0.96608 0.95467 1.02403 1.22428 0.86514 0.98033 1.00857 1.63725 1.08524 1.07561 1.46508 1.22905 0.94343 0.97098 0.92997 1.23373 0.98382 0.97027 1.00996 1.22882 0.92672 0.90577 0.97903 0.91013 1.60518 1.08629 1.43495 1.16847 1.19382 0.91787 0.92406 0.87805 0.97808 1.21693 0.92936 1.41818 1.00528 0.94159 1.25778 0.95106 0.95566 1.01647 1.70040 1.07356 1.50121 1.30988 0.85841 0.79275 0.79137 0.78101 1.19277 1.22715 1.17437 1.21806 0.96332 0.98232 0.99138 1.21709 0.95416 1.00920 1.01469 1.22700 0.97228 0.89573 0.97240 0.92742 0.91806 0.92182 0.92065 0.91540 0.90352 0.94921 0.89754 0.92876 0.91651 0.91993 0.84449 0.92500 0.92640 0.95175 0.92298 0.94014 0.91492 0.92029 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -2.09 5.60 30.59 0.17 -1.92 16 3 C 0.05 1.00 4.82 86.30 0.42 1.41 16 4 N -0.54 -13.53 5.31 -885.57 -4.71 -18.23 16 5 C 0.05 1.36 5.31 86.77 0.46 1.82 16 6 C -0.16 -4.91 6.66 31.98 0.21 -4.70 16 7 C 0.07 2.32 2.39 46.10 0.11 2.43 16 8 H 0.07 2.38 7.13 -2.39 -0.02 2.37 16 9 N -0.67 -26.08 5.80 -467.26 -2.71 -28.79 16 10 C 0.20 8.96 1.69 44.17 0.07 9.03 16 11 H 0.00 0.20 6.43 -2.39 -0.02 0.18 16 12 C -0.53 -29.82 9.19 25.60 0.24 -29.59 16 13 H 0.04 2.49 7.60 -2.91 -0.02 2.47 16 14 C 0.02 0.99 5.45 84.65 0.46 1.45 16 15 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 16 Si 0.95 45.17 24.41 68.60 1.67 46.84 16 17 H -0.27 -12.17 6.83 99.48 0.68 -11.49 16 18 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 19 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 20 C -0.12 -4.96 5.11 30.60 0.16 -4.80 16 21 C -0.14 -4.62 9.15 71.98 0.66 -3.97 16 22 C 0.06 1.69 6.63 86.65 0.57 2.27 16 23 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 1.06 6.47 -2.38 -0.02 1.05 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 0.66 7.96 -2.38 -0.02 0.64 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.22 7.02 -2.39 -0.02 1.21 16 32 H 0.06 2.18 7.77 -2.39 -0.02 2.16 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.34 14.08 7.30 -89.69 -0.66 13.42 16 35 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.03 1.35 3.22 -2.39 -0.01 1.34 16 38 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 2.12 7.30 -2.38 -0.02 2.10 16 41 H 0.06 1.57 7.49 -2.39 -0.02 1.55 16 42 H 0.08 2.25 8.03 -2.39 -0.02 2.23 16 Total: -1.00 -61.31 315.28 -0.97 -62.28 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.23 Total: 24.21 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 4.25 Total: -27.82 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -7.11 Total: -105.52 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -61.31 -0.97 -62.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328367589.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.972 kcal (2) G-P(sol) polarization free energy of solvation -61.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds