Wall clock time and date at job start Mon Mar 30 2020 03:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46856 * 2 1 4 4 N 1.46907 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.48531 * 110.99658 * 287.39486 * 4 3 2 6 6 C 1.55103 * 103.28628 * 200.33328 * 5 4 3 7 7 C 1.54599 * 102.84344 * 37.30452 * 6 5 4 8 8 H 1.08998 * 110.30469 * 97.11597 * 7 6 5 9 9 N 1.46897 * 110.30797 * 219.18696 * 7 6 5 10 10 C 1.46895 * 111.00078 * 272.96888 * 9 7 6 11 11 H 1.08997 * 109.46892 * 34.25177 * 10 9 7 12 12 C 1.50702 * 109.47017 * 154.24404 * 10 9 7 13 13 H 1.08010 * 120.00105 * 5.03849 * 12 10 9 14 14 C 1.37874 * 120.00219 * 185.04128 * 12 10 9 15 15 N 1.31520 * 119.99958 * 9.75587 * 14 12 10 16 16 Si 1.86800 * 120.00163 * 189.74996 * 14 12 10 17 17 H 1.48501 * 109.47346 * 270.00200 * 16 14 12 18 18 H 1.48501 * 109.46805 * 30.00368 * 16 14 12 19 19 H 1.48499 * 109.47154 * 150.00227 * 16 14 12 20 20 C 1.52993 * 109.47599 * 274.24520 * 10 9 7 21 21 C 1.53008 * 109.47158 * 302.14061 * 20 10 9 22 22 C 1.47900 * 110.99909 * 170.00168 * 4 3 2 23 23 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47645 * 300.00143 * 1 2 3 25 25 H 1.09002 * 109.46896 * 60.00627 * 1 2 3 26 26 H 1.08997 * 109.47645 * 239.99857 * 2 1 3 27 27 H 1.09002 * 109.46896 * 119.99373 * 2 1 3 28 28 H 1.08994 * 109.47284 * 60.00021 * 3 2 1 29 29 H 1.08997 * 109.47174 * 299.99723 * 3 2 1 30 30 H 1.09004 * 110.67267 * 318.71400 * 5 4 3 31 31 H 1.09004 * 110.67047 * 81.83981 * 5 4 3 32 32 H 1.09003 * 110.70969 * 279.00058 * 6 5 4 33 33 H 1.08993 * 110.81224 * 155.66166 * 6 5 4 34 34 H 1.00901 * 111.00147 * 36.93383 * 9 7 6 35 35 H 0.96994 * 119.99627 * 357.18027 * 15 14 12 36 36 H 1.08998 * 109.46895 * 62.13761 * 20 10 9 37 37 H 1.09000 * 109.47146 * 182.14084 * 20 10 9 38 38 H 1.09001 * 109.46844 * 304.44324 * 21 20 10 39 39 H 1.09002 * 109.47066 * 64.44169 * 21 20 10 40 40 H 1.09000 * 109.46803 * 184.44395 * 21 20 10 41 41 H 1.08996 * 109.91780 * 26.48581 * 22 4 3 42 42 H 1.09000 * 110.07631 * 265.28406 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0418 1.0279 1.3224 6 6 5.4910 1.5806 1.3122 7 6 5.3384 2.9313 0.5757 8 1 5.2546 3.7466 1.2943 9 7 6.4819 3.1563 -0.3185 10 6 7.5897 3.8041 0.3963 11 1 7.6139 3.4496 1.4267 12 6 8.8919 3.4648 -0.2822 13 1 8.8902 2.8995 -1.2025 14 6 10.0856 3.8760 0.2719 15 7 10.1058 4.3930 1.4811 16 14 11.6742 3.6987 -0.6947 17 1 12.2830 2.3749 -0.4080 18 1 11.3844 3.8063 -2.1472 19 1 12.6181 4.7741 -0.2973 20 6 7.3879 5.3206 0.3832 21 6 7.3007 5.8110 -1.0635 22 6 4.0389 2.8025 -0.2404 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 3.4645 1.4804 2.1287 31 1 4.0446 -0.0584 1.4127 32 1 6.1541 0.9136 0.7613 33 1 5.8539 1.7342 2.3284 34 1 6.7826 2.2929 -0.7454 35 1 9.2764 4.5227 1.9669 36 1 6.4649 5.5687 0.9072 37 1 8.2291 5.8034 0.8804 38 1 8.1896 5.4940 -1.6088 39 1 6.4141 5.3894 -1.5373 40 1 7.2361 6.8991 -1.0750 41 1 3.3157 3.5468 0.0929 42 1 4.2511 2.9398 -1.3007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328367591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:40 Heat of formation + Delta-G solvation = -15.437497 kcal Electronic energy + Delta-G solvation = -17985.412148 eV Core-core repulsion = 15385.354565 eV Total energy + Delta-G solvation = -2600.057584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.06362 -36.32299 -34.36025 -32.23577 -30.84195 -29.47028 -27.88054 -25.56507 -24.40695 -23.42166 -21.92233 -20.53314 -20.28827 -19.12332 -17.04296 -15.80952 -15.55415 -15.13697 -14.18411 -14.01656 -13.71415 -13.48283 -13.42923 -13.12380 -12.71697 -12.30278 -12.10546 -12.02774 -11.75333 -11.53389 -11.27405 -11.11583 -10.92965 -10.78591 -10.73780 -10.62422 -10.43767 -10.12257 -10.08232 -9.85321 -9.70124 -8.55718 -8.29344 -8.22292 -7.31072 -6.35158 -4.04596 3.43534 3.48425 3.63551 4.07220 4.52276 4.76167 4.91685 4.94874 5.07990 5.17922 5.25610 5.38545 5.42209 5.46646 5.57866 5.64050 5.65426 5.83318 5.87786 5.90725 6.04948 6.11034 6.18611 6.22483 6.32206 6.39100 6.44560 6.46250 6.64059 6.99230 7.04542 7.10355 7.18227 7.27015 7.51217 7.55377 7.91802 8.15244 8.55635 8.62782 8.89393 9.66121 11.02432 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041805 B = 0.004856 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.615101 B = 5764.441153 C = 5978.566762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.047 3.953 4 N -0.518 5.518 5 C 0.038 3.962 6 C -0.150 4.150 7 C 0.081 3.919 8 H 0.072 0.928 9 N -0.669 5.669 10 C 0.204 3.796 11 H -0.007 1.007 12 C -0.594 4.594 13 H 0.053 0.947 14 C 0.023 3.977 15 N -0.911 5.911 16 Si 1.067 2.933 17 H -0.290 1.290 18 H -0.287 1.287 19 H -0.285 1.285 20 C -0.106 4.106 21 C -0.119 4.119 22 C 0.046 3.954 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.338 0.662 35 H 0.270 0.730 36 H 0.016 0.984 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.037 0.963 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.763 -5.493 -1.334 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.082 4.082 4 N -0.243 5.243 5 C -0.090 4.090 6 C -0.190 4.190 7 C -0.031 4.031 8 H 0.090 0.910 9 N -0.300 5.300 10 C 0.096 3.904 11 H 0.010 0.990 12 C -0.633 4.633 13 H 0.072 0.928 14 C -0.182 4.182 15 N -0.547 5.547 16 Si 0.896 3.104 17 H -0.217 1.217 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.145 4.145 21 C -0.177 4.177 22 C -0.083 4.083 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.196 -4.993 -1.929 14.240 hybrid contribution -1.674 -0.358 1.227 2.106 sum -14.869 -5.351 -0.703 15.818 Atomic orbital electron populations 1.21745 0.95929 1.01555 1.01640 1.21473 0.94983 0.96590 1.02605 1.22304 0.88356 0.96999 1.00522 1.64758 1.07006 1.23814 1.28672 1.23209 0.95510 1.00351 0.89949 1.23282 0.95861 0.98511 1.01333 1.22350 0.92312 0.95101 0.93339 0.90993 1.60626 1.07957 1.29384 1.31986 1.19215 0.88532 0.90455 0.92185 0.98990 1.21972 0.91342 1.38770 1.11180 0.92838 1.25693 1.02126 0.94131 0.96200 1.70775 1.31129 1.42704 1.10081 0.83574 0.75203 0.76565 0.75073 1.21669 1.21349 1.21071 1.21508 0.97817 0.98839 0.96301 1.21423 1.02056 0.96350 0.97849 1.22938 0.95133 0.87988 1.02196 0.92684 0.93014 0.92726 0.91186 0.92221 0.95052 0.91073 0.94314 0.90629 0.90549 0.91577 0.84299 0.91860 0.96500 0.92389 0.92157 0.93373 0.96449 0.94500 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.20 6.02 -26.73 -0.16 -1.36 16 3 C 0.05 0.55 4.71 -3.82 -0.02 0.53 16 4 N -0.52 -7.33 5.25 -230.34 -1.21 -8.54 16 5 C 0.04 0.52 5.91 -1.81 -0.01 0.51 16 6 C -0.15 -2.45 6.60 -24.78 -0.16 -2.62 16 7 C 0.08 1.44 3.08 -66.35 -0.20 1.23 16 8 H 0.07 1.35 7.26 -51.93 -0.38 0.97 16 9 N -0.67 -13.86 5.22 -99.54 -0.52 -14.38 16 10 C 0.20 4.97 1.77 -68.87 -0.12 4.85 16 11 H -0.01 -0.20 7.10 -51.93 -0.37 -0.57 16 12 C -0.59 -16.02 7.26 -34.44 -0.25 -16.27 16 13 H 0.05 1.46 7.68 -52.48 -0.40 1.05 16 14 C 0.02 0.64 5.18 -17.82 -0.09 0.55 16 15 N -0.91 -26.83 13.04 55.43 0.72 -26.10 16 16 Si 1.07 24.97 29.91 -169.99 -5.09 19.89 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.11 -2.49 5.47 -26.73 -0.15 -2.64 16 21 C -0.12 -2.61 9.52 37.16 0.35 -2.26 16 22 C 0.05 0.71 6.46 -2.75 -0.02 0.69 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.61 7.37 -51.93 -0.38 0.23 16 28 H 0.03 0.36 7.83 -51.93 -0.41 -0.04 16 29 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 30 H 0.04 0.51 7.81 -51.93 -0.41 0.10 16 31 H 0.08 0.97 7.80 -51.93 -0.41 0.57 16 32 H 0.08 1.34 7.60 -51.93 -0.39 0.94 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.34 7.18 7.65 -39.29 -0.30 6.88 16 35 H 0.27 7.95 6.04 -40.82 -0.25 7.70 16 36 H 0.02 0.36 7.54 -51.93 -0.39 -0.03 16 37 H 0.06 1.50 6.38 -51.93 -0.33 1.17 16 38 H 0.06 1.42 7.14 -51.93 -0.37 1.05 16 39 H 0.05 1.00 7.69 -51.93 -0.40 0.60 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.04 0.54 7.77 -51.93 -0.40 0.13 16 42 H 0.09 1.48 7.93 -51.93 -0.41 1.07 16 LS Contribution 322.17 15.07 4.85 4.85 Total: -1.00 -27.91 322.17 -9.45 -37.36 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.75 Total: 4.58 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -0.46 Total: -17.65 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -1.01 Total: -49.03 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.09 Total: 19.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.91 -9.45 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328367591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.919 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds