Wall clock time and date at job start Mon Mar 30 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46856 * 2 1 4 4 N 1.46907 * 109.47088 * 180.02562 * 3 2 1 5 5 C 1.48531 * 110.99658 * 287.39486 * 4 3 2 6 6 C 1.55103 * 103.28628 * 200.33328 * 5 4 3 7 7 C 1.54599 * 102.84344 * 37.30452 * 6 5 4 8 8 H 1.08998 * 110.30469 * 97.11597 * 7 6 5 9 9 N 1.46897 * 110.30797 * 219.18696 * 7 6 5 10 10 C 1.46895 * 111.00078 * 272.96888 * 9 7 6 11 11 H 1.08997 * 109.46892 * 34.25177 * 10 9 7 12 12 C 1.50702 * 109.47017 * 154.24404 * 10 9 7 13 13 H 1.08010 * 120.00105 * 5.03849 * 12 10 9 14 14 C 1.37874 * 120.00219 * 185.04128 * 12 10 9 15 15 N 1.31520 * 119.99958 * 9.75587 * 14 12 10 16 16 Si 1.86800 * 120.00163 * 189.74996 * 14 12 10 17 17 H 1.48501 * 109.47346 * 270.00200 * 16 14 12 18 18 H 1.48501 * 109.46805 * 30.00368 * 16 14 12 19 19 H 1.48499 * 109.47154 * 150.00227 * 16 14 12 20 20 C 1.52993 * 109.47599 * 274.24520 * 10 9 7 21 21 C 1.53008 * 109.47158 * 302.14061 * 20 10 9 22 22 C 1.47900 * 110.99909 * 170.00168 * 4 3 2 23 23 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47645 * 300.00143 * 1 2 3 25 25 H 1.09002 * 109.46896 * 60.00627 * 1 2 3 26 26 H 1.08997 * 109.47645 * 239.99857 * 2 1 3 27 27 H 1.09002 * 109.46896 * 119.99373 * 2 1 3 28 28 H 1.08994 * 109.47284 * 60.00021 * 3 2 1 29 29 H 1.08997 * 109.47174 * 299.99723 * 3 2 1 30 30 H 1.09004 * 110.67267 * 318.71400 * 5 4 3 31 31 H 1.09004 * 110.67047 * 81.83981 * 5 4 3 32 32 H 1.09003 * 110.70969 * 279.00058 * 6 5 4 33 33 H 1.08993 * 110.81224 * 155.66166 * 6 5 4 34 34 H 1.00901 * 111.00147 * 36.93383 * 9 7 6 35 35 H 0.96994 * 119.99627 * 357.18027 * 15 14 12 36 36 H 1.08998 * 109.46895 * 62.13761 * 20 10 9 37 37 H 1.09000 * 109.47146 * 182.14084 * 20 10 9 38 38 H 1.09001 * 109.46844 * 304.44324 * 21 20 10 39 39 H 1.09002 * 109.47066 * 64.44169 * 21 20 10 40 40 H 1.09000 * 109.46803 * 184.44395 * 21 20 10 41 41 H 1.08996 * 109.91780 * 26.48581 * 22 4 3 42 42 H 1.09000 * 110.07631 * 265.28406 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0418 1.0279 1.3224 6 6 5.4910 1.5806 1.3122 7 6 5.3384 2.9313 0.5757 8 1 5.2546 3.7466 1.2943 9 7 6.4819 3.1563 -0.3185 10 6 7.5897 3.8041 0.3963 11 1 7.6139 3.4496 1.4267 12 6 8.8919 3.4648 -0.2822 13 1 8.8902 2.8995 -1.2025 14 6 10.0856 3.8760 0.2719 15 7 10.1058 4.3930 1.4811 16 14 11.6742 3.6987 -0.6947 17 1 12.2830 2.3749 -0.4080 18 1 11.3844 3.8063 -2.1472 19 1 12.6181 4.7741 -0.2973 20 6 7.3879 5.3206 0.3832 21 6 7.3007 5.8110 -1.0635 22 6 4.0389 2.8025 -0.2404 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6766 1.9564 -0.8900 30 1 3.4645 1.4804 2.1287 31 1 4.0446 -0.0584 1.4127 32 1 6.1541 0.9136 0.7613 33 1 5.8539 1.7342 2.3284 34 1 6.7826 2.2929 -0.7454 35 1 9.2764 4.5227 1.9669 36 1 6.4649 5.5687 0.9072 37 1 8.2291 5.8034 0.8804 38 1 8.1896 5.4940 -1.6088 39 1 6.4141 5.3894 -1.5373 40 1 7.2361 6.8991 -1.0750 41 1 3.3157 3.5468 0.0929 42 1 4.2511 2.9398 -1.3007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328367591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:39 Heat of formation + Delta-G solvation = -32.913066 kcal Electronic energy + Delta-G solvation = -17986.169946 eV Core-core repulsion = 15385.354565 eV Total energy + Delta-G solvation = -2600.815381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35059 -37.99350 -35.61084 -33.88173 -32.52695 -30.77096 -29.31719 -27.14314 -25.78387 -25.32850 -22.92921 -21.89238 -21.54354 -20.87084 -18.99912 -17.06928 -16.84465 -16.19539 -15.80126 -15.65812 -15.50561 -15.07636 -14.50153 -14.34967 -14.23997 -13.83107 -13.37523 -13.32510 -13.13602 -12.92751 -12.68516 -12.63570 -12.33160 -12.19973 -12.02285 -11.93299 -11.88583 -11.77519 -11.63880 -11.50572 -11.46175 -10.62044 -10.32031 -9.40190 -9.05111 -8.56889 -6.26428 1.54316 1.62569 1.80017 2.57998 2.98315 3.23343 3.43646 3.70835 3.79928 4.05232 4.13331 4.23548 4.28701 4.39875 4.47689 4.51885 4.55455 4.60489 4.66772 4.74929 4.78156 4.81541 4.87537 4.96542 5.00905 5.10316 5.14361 5.19504 5.25520 5.29688 5.39543 5.42303 5.57084 5.70287 5.87870 5.93494 6.11419 6.14769 6.53193 6.65138 6.85726 7.52436 8.80887 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041805 B = 0.004856 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.615101 B = 5764.441153 C = 5978.566762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.046 3.954 4 N -0.527 5.527 5 C 0.049 3.951 6 C -0.148 4.148 7 C 0.078 3.922 8 H 0.060 0.940 9 N -0.663 5.663 10 C 0.211 3.789 11 H -0.040 1.040 12 C -0.598 4.598 13 H 0.048 0.952 14 C -0.024 4.024 15 N -0.935 5.935 16 Si 1.110 2.890 17 H -0.278 1.278 18 H -0.272 1.272 19 H -0.286 1.286 20 C -0.101 4.101 21 C -0.109 4.109 22 C 0.057 3.943 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.334 0.666 35 H 0.258 0.742 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.206 -6.000 -2.175 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.082 4.082 4 N -0.252 5.252 5 C -0.079 4.079 6 C -0.188 4.188 7 C -0.034 4.034 8 H 0.078 0.922 9 N -0.293 5.293 10 C 0.102 3.898 11 H -0.022 1.022 12 C -0.636 4.636 13 H 0.067 0.933 14 C -0.223 4.223 15 N -0.573 5.573 16 Si 0.933 3.067 17 H -0.204 1.204 18 H -0.197 1.197 19 H -0.212 1.212 20 C -0.140 4.140 21 C -0.166 4.166 22 C -0.071 4.071 23 H 0.082 0.918 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.677 -5.513 -2.774 15.922 hybrid contribution -1.296 -0.225 1.508 2.001 sum -15.973 -5.738 -1.266 17.019 Atomic orbital electron populations 1.21713 0.94366 1.02338 1.02061 1.21439 0.96286 0.95313 1.02212 1.22394 0.86547 0.98255 1.01005 1.64768 1.08799 1.22737 1.28850 1.23148 0.93441 1.01096 0.90253 1.23180 0.97648 0.97589 1.00380 1.22412 0.92246 0.95454 0.93284 0.92155 1.60590 1.07374 1.29133 1.32179 1.19019 0.89040 0.91346 0.90432 1.02206 1.22244 0.92602 1.37992 1.10745 0.93330 1.26985 1.05531 0.93537 0.96261 1.70888 1.30486 1.44723 1.11209 0.83010 0.72003 0.76940 0.74706 1.20368 1.19654 1.21217 1.21400 0.97248 0.97854 0.97492 1.21305 1.01415 0.97799 0.96071 1.22744 0.93974 0.89333 1.01095 0.91771 0.92575 0.92332 0.91892 0.92313 0.94479 0.90616 0.93188 0.89288 0.91969 0.92343 0.84753 0.93173 0.95128 0.95175 0.94257 0.92330 0.94224 0.93259 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.11 -2.05 6.02 30.60 0.18 -1.86 16 3 C 0.05 0.96 4.71 86.30 0.41 1.37 16 4 N -0.53 -13.91 5.25 -882.65 -4.63 -18.54 16 5 C 0.05 1.26 5.91 86.71 0.51 1.77 16 6 C -0.15 -4.82 6.60 31.86 0.21 -4.61 16 7 C 0.08 2.73 3.08 45.80 0.14 2.87 16 8 H 0.06 2.26 7.26 -2.39 -0.02 2.24 16 9 N -0.66 -27.55 5.22 -468.84 -2.45 -30.00 16 10 C 0.21 10.45 1.77 44.17 0.08 10.53 16 11 H -0.04 -2.19 7.10 -2.39 -0.02 -2.21 16 12 C -0.60 -32.61 7.26 25.60 0.19 -32.43 16 13 H 0.05 2.65 7.68 -2.91 -0.02 2.63 16 14 C -0.02 -1.36 5.18 84.65 0.44 -0.92 16 15 N -0.94 -56.32 13.04 21.45 0.28 -56.04 16 16 Si 1.11 50.20 29.91 68.60 2.05 52.25 16 17 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 C -0.10 -4.79 5.47 30.59 0.17 -4.63 16 21 C -0.11 -4.64 9.52 71.98 0.69 -3.96 16 22 C 0.06 1.68 6.46 86.45 0.56 2.23 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.06 7.37 -2.39 -0.02 1.04 16 28 H 0.04 0.75 7.83 -2.39 -0.02 0.73 16 29 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 30 H 0.05 1.20 7.81 -2.39 -0.02 1.18 16 31 H 0.09 2.09 7.80 -2.38 -0.02 2.08 16 32 H 0.06 2.19 7.60 -2.39 -0.02 2.17 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.33 14.30 7.65 -89.69 -0.69 13.61 16 35 H 0.26 15.76 6.04 -92.71 -0.56 15.19 16 36 H 0.03 1.33 7.54 -2.39 -0.02 1.31 16 37 H 0.03 1.58 6.38 -2.39 -0.02 1.56 16 38 H 0.04 1.82 7.14 -2.39 -0.02 1.80 16 39 H 0.06 2.35 7.69 -2.39 -0.02 2.34 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.33 7.77 -2.39 -0.02 1.32 16 42 H 0.08 2.55 7.93 -2.39 -0.02 2.54 16 Total: -1.00 -59.68 322.17 0.02 -59.66 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.48 Total: 23.62 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 4.28 Total: -30.96 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -6.80 Total: -104.58 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -59.68 0.02 -59.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328367591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.749 kcal (2) G-P(sol) polarization free energy of solvation -59.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds