Wall clock time and date at job start Mon Mar 30 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 H 1.08994 * 109.46611 * 57.62324 * 3 2 1 5 5 C 1.52992 * 109.47027 * 177.62452 * 3 2 1 6 6 N 1.46902 * 109.47162 * 174.99887 * 5 3 2 7 7 C 1.46893 * 111.00420 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.47100 * 35.00031 * 7 6 5 9 9 C 1.53006 * 109.47191 * 275.00131 * 7 6 5 10 10 C 1.50699 * 109.47531 * 155.00243 * 7 6 5 11 11 H 1.08005 * 119.99820 * 5.42172 * 10 7 6 12 12 C 1.37874 * 120.00550 * 185.42547 * 10 7 6 13 13 N 1.31517 * 120.00141 * 198.36075 * 12 10 7 14 14 Si 1.86799 * 119.99819 * 18.62871 * 12 10 7 15 15 H 1.48503 * 109.46974 * 179.72786 * 14 12 10 16 16 H 1.48498 * 109.47214 * 299.72677 * 14 12 10 17 17 H 1.48493 * 109.47166 * 59.73005 * 14 12 10 18 18 N 1.46900 * 109.46689 * 297.62479 * 3 2 1 19 19 C 1.48533 * 111.00456 * 324.22201 * 18 3 2 20 20 C 1.54938 * 103.22617 * 159.72338 * 19 18 3 21 21 C 1.54599 * 102.92318 * 322.58701 * 20 19 18 22 22 C 1.47899 * 110.99969 * 81.62453 * 18 3 2 23 23 H 1.08995 * 109.47311 * 68.73883 * 1 2 3 24 24 H 1.09009 * 109.47140 * 188.73709 * 1 2 3 25 25 H 1.08994 * 109.47111 * 308.73497 * 1 2 3 26 26 H 1.09008 * 109.47402 * 240.00140 * 2 1 3 27 27 H 1.08997 * 109.47596 * 120.00217 * 2 1 3 28 28 H 1.09004 * 109.47519 * 55.00624 * 5 3 2 29 29 H 1.08998 * 109.47524 * 294.99609 * 5 3 2 30 30 H 1.00904 * 110.99915 * 303.96032 * 6 5 3 31 31 H 1.08999 * 109.46851 * 295.44726 * 9 7 6 32 32 H 1.08997 * 109.46649 * 55.44963 * 9 7 6 33 33 H 1.09006 * 109.46717 * 175.44779 * 9 7 6 34 34 H 0.97001 * 119.99775 * 355.22390 * 13 12 10 35 35 H 1.09001 * 110.66885 * 278.15984 * 19 18 3 36 36 H 1.08998 * 110.66549 * 41.28896 * 19 18 3 37 37 H 1.08998 * 110.72020 * 204.23241 * 20 19 18 38 38 H 1.08996 * 110.72586 * 80.94157 * 20 19 18 39 39 H 1.09008 * 110.30736 * 263.04513 * 21 20 19 40 40 H 1.08995 * 110.31160 * 140.87064 * 21 20 19 41 41 H 1.09000 * 109.91741 * 333.50465 * 22 18 3 42 42 H 1.09004 * 109.92094 * 94.79613 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6422 1.9684 0.8679 5 6 3.5687 1.4429 0.0598 6 7 4.0632 2.8210 -0.0608 7 6 5.5306 2.8604 -0.0080 8 1 5.9356 1.9735 -0.4953 9 6 5.9877 2.8938 1.4518 10 6 6.0260 4.0940 -0.7178 11 1 5.3211 4.8243 -1.0869 12 6 7.3790 4.2904 -0.8961 13 7 7.8381 5.4908 -1.1749 14 14 8.5591 2.8499 -0.7490 15 1 9.9470 3.3206 -0.9892 16 1 8.4627 2.2681 0.6139 17 1 8.2061 1.8160 -1.7547 18 7 1.5977 2.1182 -1.2271 19 6 1.5971 1.1816 -2.3800 20 6 0.6461 1.8669 -3.3931 21 6 -0.4489 2.4718 -2.4847 22 6 0.2045 2.5970 -1.0959 23 1 -0.3634 0.3726 -0.9577 24 1 -0.3634 -1.0158 0.1561 25 1 -0.3633 0.6430 0.8016 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9646 0.8421 -0.7590 29 1 3.8953 1.0217 1.0106 30 1 3.7201 3.2557 -0.9043 31 1 5.6506 3.8201 1.9169 32 1 5.5625 2.0436 1.9852 33 1 7.0757 2.8414 1.4931 34 1 7.2204 6.2239 -1.3235 35 1 2.5993 1.0850 -2.7977 36 1 1.2070 0.2077 -2.0842 37 1 0.2184 1.1340 -4.0771 38 1 1.1677 2.6506 -3.9424 39 1 -1.3117 1.8071 -2.4384 40 1 -0.7461 3.4537 -2.8528 41 1 -0.3335 1.9809 -0.3754 42 1 0.1985 3.6388 -0.7752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380311949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:09 Heat of formation + Delta-G solvation = 11.006742 kcal Electronic energy + Delta-G solvation = -18403.573445 eV Core-core repulsion = 15804.662570 eV Total energy + Delta-G solvation = -2598.910875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.87632 -36.01897 -34.23715 -32.26251 -30.60121 -29.30092 -28.86423 -26.58118 -24.57761 -22.45605 -22.09870 -20.78238 -19.48501 -19.38609 -17.41793 -16.39315 -16.02248 -14.87491 -14.61674 -14.23731 -14.05185 -13.51997 -13.33707 -12.67495 -12.58255 -12.44777 -12.20181 -11.91802 -11.79991 -11.57354 -11.30401 -11.29466 -11.11528 -10.92856 -10.88819 -10.57680 -10.38257 -10.33001 -10.20539 -9.81547 -9.59401 -8.78518 -8.14266 -8.00743 -7.23320 -6.37087 -3.96333 3.42883 3.46386 3.65020 4.13760 4.54989 4.65948 4.71159 4.85942 4.95494 5.02273 5.09462 5.33583 5.34962 5.45483 5.53378 5.55894 5.64292 5.78450 5.83680 5.83833 5.86177 5.88530 5.96696 6.08494 6.12018 6.15498 6.23001 6.32156 6.41777 6.60687 6.79763 6.94445 7.03835 7.14484 7.29798 7.61721 7.93960 8.36072 8.51901 8.77827 9.08974 9.71686 11.02449 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.006087 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.302012 B = 4599.215350 C = 4979.122140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.159 4.159 3 C 0.079 3.921 4 H 0.083 0.917 5 C 0.073 3.927 6 N -0.674 5.674 7 C 0.187 3.813 8 H -0.012 1.012 9 C -0.137 4.137 10 C -0.599 4.599 11 H 0.060 0.940 12 C 0.030 3.970 13 N -0.908 5.908 14 Si 1.047 2.953 15 H -0.287 1.287 16 H -0.274 1.274 17 H -0.287 1.287 18 N -0.499 5.499 19 C 0.018 3.982 20 C -0.124 4.124 21 C -0.130 4.130 22 C 0.019 3.981 23 H 0.063 0.937 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.350 0.650 31 H 0.049 0.951 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.267 0.733 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 -11.496 -0.390 19.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.198 4.198 3 C -0.031 4.031 4 H 0.101 0.899 5 C -0.058 4.058 6 N -0.307 5.307 7 C 0.078 3.922 8 H 0.005 0.995 9 C -0.195 4.195 10 C -0.637 4.637 11 H 0.078 0.922 12 C -0.175 4.175 13 N -0.543 5.543 14 Si 0.876 3.124 15 H -0.213 1.213 16 H -0.200 1.200 17 H -0.214 1.214 18 N -0.222 5.222 19 C -0.109 4.109 20 C -0.162 4.162 21 C -0.168 4.168 22 C -0.109 4.109 23 H 0.082 0.918 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.170 0.830 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.014 -11.292 0.174 17.998 hybrid contribution -1.940 -0.610 -0.650 2.135 sum -15.954 -11.902 -0.476 19.910 Atomic orbital electron populations 1.22124 0.96193 1.01294 1.02078 1.22228 0.95893 0.98956 1.02731 1.21956 0.96478 0.91598 0.93032 0.89910 1.21851 0.92032 0.92641 0.99263 1.60448 1.10902 1.13971 1.45336 1.19385 0.84153 0.95941 0.92706 0.99476 1.22128 0.99654 0.99115 0.98633 1.22102 0.94244 1.06770 1.40622 0.92221 1.25687 0.97182 1.00613 0.94003 1.70851 1.38059 0.99944 1.45420 0.84016 0.76028 0.75285 0.77036 1.21253 1.20047 1.21360 1.64841 1.20631 1.33300 1.03442 1.23534 1.00297 0.95356 0.91714 1.22468 0.96391 0.99964 0.97357 1.22375 0.97790 1.01134 0.95478 1.23228 0.89247 1.01434 0.96951 0.91823 0.93096 0.92422 0.90983 0.91439 0.96737 0.92049 0.83021 0.93220 0.96344 0.93414 0.92286 0.90366 0.92307 0.91646 0.90762 0.92092 0.91290 0.92189 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 7.93 37.16 0.29 -1.26 16 2 C -0.16 -1.83 4.87 -26.73 -0.13 -1.96 16 3 C 0.08 1.13 2.25 -67.71 -0.15 0.98 16 4 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 5 C 0.07 1.30 5.10 -3.83 -0.02 1.28 16 6 N -0.67 -14.84 6.29 -107.96 -0.68 -15.52 16 7 C 0.19 4.70 2.19 -68.87 -0.15 4.55 16 8 H -0.01 -0.31 6.45 -51.93 -0.33 -0.65 16 9 C -0.14 -3.25 9.11 37.16 0.34 -2.91 16 10 C -0.60 -17.44 8.82 -34.44 -0.30 -17.74 16 11 H 0.06 1.88 7.92 -52.48 -0.42 1.46 16 12 C 0.03 0.89 5.33 -17.82 -0.10 0.80 16 13 N -0.91 -28.55 13.70 55.43 0.76 -27.79 16 14 Si 1.05 26.02 26.44 -169.99 -4.50 21.52 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 16 H -0.27 -6.33 5.55 56.52 0.31 -6.02 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 18 N -0.50 -7.13 4.23 -222.50 -0.94 -8.07 16 19 C 0.02 0.23 5.45 -1.90 -0.01 0.22 16 20 C -0.12 -1.37 7.06 -24.87 -0.18 -1.55 16 21 C -0.13 -1.34 6.43 -25.37 -0.16 -1.51 16 22 C 0.02 0.23 5.69 -2.75 -0.02 0.22 16 23 H 0.06 0.62 4.39 -51.93 -0.23 0.39 16 24 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.06 0.56 7.26 -51.93 -0.38 0.18 16 26 H 0.07 0.84 5.93 -51.92 -0.31 0.53 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 29 H 0.06 1.08 7.37 -51.93 -0.38 0.70 16 30 H 0.35 8.05 7.40 -39.29 -0.29 7.76 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.37 7.36 -51.93 -0.38 -0.01 16 33 H 0.05 1.14 4.87 -51.93 -0.25 0.89 16 34 H 0.27 8.39 8.73 -40.82 -0.36 8.03 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.67 4.16 -51.93 -0.22 0.46 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.54 7.91 -51.92 -0.41 0.13 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.66 4.15 -51.93 -0.22 0.44 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -30.40 305.65 -8.60 -39.00 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.26 Total: 5.14 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.58 Total: -18.89 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.86 Total: -51.38 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -4.50 Total: 21.52 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.40 -8.60 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380311949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.002 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds