Wall clock time and date at job start Mon Mar 30 2020 03:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47134 * 2 1 4 4 H 1.08994 * 109.46611 * 57.62324 * 3 2 1 5 5 C 1.52992 * 109.47027 * 177.62452 * 3 2 1 6 6 N 1.46902 * 109.47162 * 174.99887 * 5 3 2 7 7 C 1.46893 * 111.00420 * 180.02562 * 6 5 3 8 8 H 1.08998 * 109.47100 * 35.00031 * 7 6 5 9 9 C 1.53006 * 109.47191 * 275.00131 * 7 6 5 10 10 C 1.50699 * 109.47531 * 155.00243 * 7 6 5 11 11 H 1.08005 * 119.99820 * 5.42172 * 10 7 6 12 12 C 1.37874 * 120.00550 * 185.42547 * 10 7 6 13 13 N 1.31517 * 120.00141 * 198.36075 * 12 10 7 14 14 Si 1.86799 * 119.99819 * 18.62871 * 12 10 7 15 15 H 1.48503 * 109.46974 * 179.72786 * 14 12 10 16 16 H 1.48498 * 109.47214 * 299.72677 * 14 12 10 17 17 H 1.48493 * 109.47166 * 59.73005 * 14 12 10 18 18 N 1.46900 * 109.46689 * 297.62479 * 3 2 1 19 19 C 1.48533 * 111.00456 * 324.22201 * 18 3 2 20 20 C 1.54938 * 103.22617 * 159.72338 * 19 18 3 21 21 C 1.54599 * 102.92318 * 322.58701 * 20 19 18 22 22 C 1.47899 * 110.99969 * 81.62453 * 18 3 2 23 23 H 1.08995 * 109.47311 * 68.73883 * 1 2 3 24 24 H 1.09009 * 109.47140 * 188.73709 * 1 2 3 25 25 H 1.08994 * 109.47111 * 308.73497 * 1 2 3 26 26 H 1.09008 * 109.47402 * 240.00140 * 2 1 3 27 27 H 1.08997 * 109.47596 * 120.00217 * 2 1 3 28 28 H 1.09004 * 109.47519 * 55.00624 * 5 3 2 29 29 H 1.08998 * 109.47524 * 294.99609 * 5 3 2 30 30 H 1.00904 * 110.99915 * 303.96032 * 6 5 3 31 31 H 1.08999 * 109.46851 * 295.44726 * 9 7 6 32 32 H 1.08997 * 109.46649 * 55.44963 * 9 7 6 33 33 H 1.09006 * 109.46717 * 175.44779 * 9 7 6 34 34 H 0.97001 * 119.99775 * 355.22390 * 13 12 10 35 35 H 1.09001 * 110.66885 * 278.15984 * 19 18 3 36 36 H 1.08998 * 110.66549 * 41.28896 * 19 18 3 37 37 H 1.08998 * 110.72020 * 204.23241 * 20 19 18 38 38 H 1.08996 * 110.72586 * 80.94157 * 20 19 18 39 39 H 1.09008 * 110.30736 * 263.04513 * 21 20 19 40 40 H 1.08995 * 110.31160 * 140.87064 * 21 20 19 41 41 H 1.09000 * 109.91741 * 333.50465 * 22 18 3 42 42 H 1.09004 * 109.92094 * 94.79613 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6422 1.9684 0.8679 5 6 3.5687 1.4429 0.0598 6 7 4.0632 2.8210 -0.0608 7 6 5.5306 2.8604 -0.0080 8 1 5.9356 1.9735 -0.4953 9 6 5.9877 2.8938 1.4518 10 6 6.0260 4.0940 -0.7178 11 1 5.3211 4.8243 -1.0869 12 6 7.3790 4.2904 -0.8961 13 7 7.8381 5.4908 -1.1749 14 14 8.5591 2.8499 -0.7490 15 1 9.9470 3.3206 -0.9892 16 1 8.4627 2.2681 0.6139 17 1 8.2061 1.8160 -1.7547 18 7 1.5977 2.1182 -1.2271 19 6 1.5971 1.1816 -2.3800 20 6 0.6461 1.8669 -3.3931 21 6 -0.4489 2.4718 -2.4847 22 6 0.2045 2.5970 -1.0959 23 1 -0.3634 0.3726 -0.9577 24 1 -0.3634 -1.0158 0.1561 25 1 -0.3633 0.6430 0.8016 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9646 0.8421 -0.7590 29 1 3.8953 1.0217 1.0106 30 1 3.7201 3.2557 -0.9043 31 1 5.6506 3.8201 1.9169 32 1 5.5625 2.0436 1.9852 33 1 7.0757 2.8414 1.4931 34 1 7.2204 6.2239 -1.3235 35 1 2.5993 1.0850 -2.7977 36 1 1.2070 0.2077 -2.0842 37 1 0.2184 1.1340 -4.0771 38 1 1.1677 2.6506 -3.9424 39 1 -1.3117 1.8071 -2.4384 40 1 -0.7461 3.4537 -2.8528 41 1 -0.3335 1.9809 -0.3754 42 1 0.1985 3.6388 -0.7752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380311949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:09 Heat of formation + Delta-G solvation = -10.550548 kcal Electronic energy + Delta-G solvation = -18404.508239 eV Core-core repulsion = 15804.662570 eV Total energy + Delta-G solvation = -2599.845670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90798 -37.73571 -35.52016 -34.22323 -31.86799 -30.68441 -29.89226 -27.96231 -26.65894 -23.75520 -23.11538 -21.70194 -21.35148 -20.59898 -19.59151 -17.38948 -17.19333 -16.36488 -16.21054 -15.50208 -15.29995 -15.03769 -14.73533 -14.22675 -14.00761 -13.76140 -13.53552 -13.24938 -13.10301 -12.98264 -12.76626 -12.42321 -12.27687 -12.23585 -12.08686 -11.91274 -11.77996 -11.65337 -11.56869 -11.42447 -11.26607 -10.96348 -10.38303 -9.13666 -8.98110 -8.70416 -6.35381 1.43271 1.50799 1.70975 2.47459 3.05545 3.10788 3.50591 3.76956 3.88178 4.03173 4.12248 4.18313 4.21648 4.41090 4.44691 4.57204 4.61747 4.64891 4.72132 4.79088 4.85207 4.88389 4.92400 4.96056 4.99755 5.03291 5.04769 5.12660 5.16028 5.18766 5.25552 5.32686 5.42110 5.64409 5.84414 6.03627 6.13375 6.22822 6.39788 6.77803 6.93549 7.42867 8.63227 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030684 B = 0.006087 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.302012 B = 4599.215350 C = 4979.122140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.152 4.152 3 C 0.086 3.914 4 H 0.075 0.925 5 C 0.073 3.927 6 N -0.679 5.679 7 C 0.189 3.811 8 H -0.011 1.011 9 C -0.131 4.131 10 C -0.604 4.604 11 H 0.018 0.982 12 C -0.020 4.020 13 N -0.937 5.937 14 Si 1.087 2.913 15 H -0.287 1.287 16 H -0.241 1.241 17 H -0.270 1.270 18 N -0.527 5.527 19 C 0.019 3.981 20 C -0.122 4.122 21 C -0.123 4.123 22 C 0.018 3.982 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.010 0.990 29 H 0.068 0.932 30 H 0.340 0.660 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.251 0.749 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 -14.358 0.255 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.191 4.191 3 C -0.024 4.024 4 H 0.093 0.907 5 C -0.058 4.058 6 N -0.310 5.310 7 C 0.079 3.921 8 H 0.007 0.993 9 C -0.189 4.189 10 C -0.642 4.642 11 H 0.036 0.964 12 C -0.218 4.218 13 N -0.573 5.573 14 Si 0.908 3.092 15 H -0.213 1.213 16 H -0.166 1.166 17 H -0.195 1.195 18 N -0.252 5.252 19 C -0.108 4.108 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.109 4.109 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.269 -14.156 0.831 20.838 hybrid contribution -1.637 0.350 -0.879 1.891 sum -16.906 -13.806 -0.049 21.827 Atomic orbital electron populations 1.22070 0.94480 1.02434 1.02234 1.22146 0.97297 0.96534 1.03112 1.21798 0.93920 0.93703 0.92952 0.90685 1.21974 0.94593 0.89905 0.99286 1.60429 1.09031 1.16848 1.44730 1.19285 0.86058 0.93655 0.93114 0.99311 1.22003 0.99629 0.99703 0.97532 1.22313 0.93864 1.07457 1.40600 0.96405 1.27191 0.99517 1.02095 0.93024 1.70987 1.37782 1.00627 1.47914 0.83544 0.73789 0.72596 0.79262 1.21264 1.16593 1.19537 1.64727 1.22330 1.34274 1.03830 1.23527 0.99557 0.96165 0.91547 1.22462 0.96229 0.99932 0.97359 1.22359 0.98046 1.01774 0.93935 1.23252 0.88433 1.00622 0.98590 0.91652 0.91422 0.92303 0.90919 0.90731 0.97186 0.91327 0.84150 0.94797 0.93148 0.93544 0.94039 0.92700 0.90457 0.89319 0.92612 0.89674 0.91223 0.90555 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 7.93 71.98 0.57 -1.92 16 2 C -0.15 -3.08 4.87 30.59 0.15 -2.94 16 3 C 0.09 2.34 2.25 44.91 0.10 2.45 16 4 H 0.07 2.17 7.91 -2.39 -0.02 2.15 16 5 C 0.07 2.50 5.10 86.30 0.44 2.94 16 6 N -0.68 -29.93 6.29 -495.47 -3.12 -33.05 16 7 C 0.19 9.38 2.19 44.17 0.10 9.48 16 8 H -0.01 -0.52 6.45 -2.39 -0.02 -0.54 16 9 C -0.13 -5.97 9.11 71.98 0.66 -5.31 16 10 C -0.60 -36.09 8.82 25.60 0.23 -35.86 16 11 H 0.02 1.18 7.92 -2.91 -0.02 1.15 16 12 C -0.02 -1.21 5.33 84.65 0.45 -0.76 16 13 N -0.94 -60.59 13.70 21.45 0.29 -60.29 16 14 Si 1.09 51.49 26.44 68.60 1.81 53.31 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.24 -10.16 5.55 99.48 0.55 -9.61 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 N -0.53 -14.73 4.23 -857.86 -3.63 -18.35 16 19 C 0.02 0.47 5.45 86.65 0.47 0.94 16 20 C -0.12 -2.52 7.06 31.80 0.22 -2.30 16 21 C -0.12 -2.30 6.43 31.48 0.20 -2.09 16 22 C 0.02 0.42 5.69 86.45 0.49 0.91 16 23 H 0.06 1.03 4.39 -2.39 -0.01 1.02 16 24 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.06 0.95 7.26 -2.39 -0.02 0.93 16 26 H 0.07 1.48 5.93 -2.38 -0.01 1.47 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.01 0.36 8.04 -2.39 -0.02 0.34 16 29 H 0.07 2.25 7.37 -2.39 -0.02 2.24 16 30 H 0.34 16.10 7.40 -89.69 -0.66 15.44 16 31 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.96 7.36 -2.39 -0.02 1.94 16 33 H 0.05 2.10 4.87 -2.38 -0.01 2.09 16 34 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.58 4.16 -2.39 -0.01 1.57 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.21 7.91 -2.38 -0.02 1.19 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.49 4.15 -2.39 -0.01 1.48 16 42 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -67.11 305.65 -0.42 -67.53 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.13 Total: 25.33 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 4.08 Total: -34.46 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -6.45 Total: -111.70 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 1.81 Total: 53.31 kcal Total: -67.11 -0.42 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380311949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.981 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds