Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47209 * 2 1 4 4 H 1.09001 * 109.47286 * 55.30178 * 3 2 1 5 5 C 1.53009 * 109.47115 * 295.30015 * 3 2 1 6 6 N 1.46899 * 109.47409 * 184.99956 * 5 3 2 7 7 C 1.46892 * 110.99840 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.47527 * 325.00297 * 7 6 5 9 9 C 1.53003 * 109.47224 * 85.00176 * 7 6 5 10 10 C 1.50704 * 109.47432 * 205.00184 * 7 6 5 11 11 H 1.08005 * 119.99180 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00462 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99600 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00120 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47570 * 59.99289 * 14 12 10 16 16 H 1.48497 * 109.47325 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46729 * 299.99530 * 14 12 10 18 18 N 1.46895 * 109.47324 * 175.30483 * 3 2 1 19 19 C 1.48532 * 111.00198 * 188.27119 * 18 3 2 20 20 C 1.54942 * 103.22982 * 159.71768 * 19 18 3 21 21 C 1.54597 * 102.92116 * 322.58865 * 20 19 18 22 22 C 1.47907 * 110.99997 * 305.66689 * 18 3 2 23 23 H 1.09004 * 109.47083 * 179.20551 * 1 2 3 24 24 H 1.08996 * 109.46741 * 59.20347 * 1 2 3 25 25 H 1.08997 * 109.46897 * 299.20143 * 1 2 3 26 26 H 1.09002 * 109.46986 * 119.99582 * 2 1 3 27 27 H 1.08996 * 109.47225 * 239.99375 * 2 1 3 28 28 H 1.08996 * 109.46754 * 305.00422 * 5 3 2 29 29 H 1.09006 * 109.46637 * 64.99697 * 5 3 2 30 30 H 1.00902 * 110.99821 * 303.95913 * 6 5 3 31 31 H 1.08995 * 109.47049 * 299.99771 * 9 7 6 32 32 H 1.09000 * 109.46771 * 59.99657 * 9 7 6 33 33 H 1.08999 * 109.47461 * 180.02562 * 9 7 6 34 34 H 0.97001 * 119.99468 * 180.02562 * 13 12 10 35 35 H 1.09002 * 110.66802 * 278.15017 * 19 18 3 36 36 H 1.08999 * 110.66812 * 41.28392 * 19 18 3 37 37 H 1.08999 * 110.72574 * 204.22488 * 20 19 18 38 38 H 1.09004 * 110.87667 * 81.01614 * 20 19 18 39 39 H 1.09003 * 110.30460 * 263.04250 * 21 20 19 40 40 H 1.08991 * 110.31026 * 140.87005 * 21 20 19 41 41 H 1.09000 * 109.91521 * 333.50797 * 22 18 3 42 42 H 1.08999 * 109.91515 * 94.80018 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6096 1.9800 0.8449 5 6 1.6288 2.1288 -1.3042 6 7 2.2189 3.4729 -1.3574 7 6 1.8442 4.1636 -2.5985 8 1 1.7841 3.4412 -3.4125 9 6 0.4839 4.8396 -2.4152 10 6 2.8825 5.2052 -2.9271 11 1 3.7358 5.3402 -2.2788 12 6 2.7433 5.9858 -4.0550 13 7 1.7045 5.8209 -4.8446 14 14 4.0308 7.2764 -4.4626 15 1 5.3507 6.6198 -4.6413 16 1 3.6512 7.9755 -5.7165 17 1 4.1135 8.2603 -3.3534 18 7 3.5046 1.4440 0.1134 19 6 4.0213 2.8217 0.3158 20 6 5.4267 2.5874 0.9248 21 6 5.2054 1.3645 1.8443 22 6 3.9456 0.6703 1.2943 23 1 -0.3633 -1.0276 -0.0143 24 1 -0.3633 0.5261 -0.8827 25 1 -0.3633 0.5014 0.8970 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.9842 1.5420 -2.1512 29 1 0.5423 2.2069 -1.3467 30 1 1.9561 4.0156 -0.5484 31 1 -0.2671 4.0863 -2.1777 32 1 0.5440 5.5620 -1.6012 33 1 0.2055 5.3517 -3.3363 34 1 1.6067 6.3698 -5.6383 35 1 4.0974 3.3478 -0.6358 36 1 3.3876 3.3720 1.0113 37 1 5.7451 3.4536 1.5048 38 1 6.1541 2.3579 0.1461 39 1 5.0406 1.6887 2.8718 40 1 6.0614 0.6918 1.7917 41 1 3.1616 0.6694 2.0515 42 1 4.1832 -0.3521 1.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380311950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = 0.460840 kcal Electronic energy + Delta-G solvation = -18390.831956 eV Core-core repulsion = 15791.463776 eV Total energy + Delta-G solvation = -2599.368180 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.09438 -36.04189 -34.50424 -32.22823 -30.51097 -28.93168 -28.01978 -25.75281 -25.05293 -23.09306 -21.23092 -20.68991 -19.92917 -19.42590 -16.35214 -16.00846 -15.48837 -14.84852 -14.64685 -13.90201 -13.68515 -13.33514 -13.15560 -12.91396 -12.46357 -12.34773 -12.09481 -11.78724 -11.54753 -11.24265 -11.07675 -10.98274 -10.86797 -10.82348 -10.57855 -10.43184 -10.37415 -10.29504 -10.19731 -10.06941 -9.67091 -8.94388 -8.31292 -7.93399 -7.00640 -5.94014 -3.96984 3.37243 3.41130 3.44482 4.35078 4.47518 4.94355 4.98428 5.03784 5.14980 5.26462 5.37735 5.44587 5.55534 5.62601 5.67823 5.78462 5.82968 5.97071 6.00539 6.05230 6.08257 6.15161 6.23163 6.26219 6.32010 6.40802 6.53349 6.65458 6.74282 6.87690 7.02967 7.17726 7.41375 7.47859 7.58673 7.77491 7.92549 8.32877 8.57342 8.66690 9.09604 9.68106 11.13094 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.006936 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.883501 B = 4036.051857 C = 5050.796319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.081 3.919 4 H 0.031 0.969 5 C 0.069 3.931 6 N -0.674 5.674 7 C 0.210 3.790 8 H 0.033 0.967 9 C -0.168 4.168 10 C -0.492 4.492 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.279 1.279 18 N -0.499 5.499 19 C 0.040 3.960 20 C -0.130 4.130 21 C -0.131 4.131 22 C 0.033 3.967 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.320 0.680 31 H 0.003 0.997 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.259 0.741 35 H 0.135 0.865 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -9.238 11.542 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.029 4.029 4 H 0.049 0.951 5 C -0.061 4.061 6 N -0.303 5.303 7 C 0.102 3.898 8 H 0.051 0.949 9 C -0.227 4.227 10 C -0.531 4.531 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.205 1.205 18 N -0.223 5.223 19 C -0.087 4.087 20 C -0.168 4.168 21 C -0.170 4.170 22 C -0.095 4.095 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.136 0.864 31 H 0.022 0.978 32 H 0.045 0.955 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.790 -9.615 10.616 14.434 hybrid contribution -0.772 1.252 0.743 1.648 sum 1.018 -8.363 11.359 14.142 Atomic orbital electron populations 1.21809 0.95882 1.01284 1.02040 1.21590 0.95422 0.96255 1.02277 1.21891 0.88132 0.95309 0.97534 0.95107 1.21960 0.95480 0.92411 0.96289 1.61159 1.61019 1.02159 1.05960 1.19183 0.91427 0.92704 0.86486 0.94910 1.22428 0.98675 0.99006 1.02638 1.21116 1.07139 1.16936 1.07912 0.92027 1.24943 0.95728 0.97545 0.96328 1.69878 1.28702 1.40702 1.14558 0.86592 0.81980 0.81576 0.77396 1.20276 1.21559 1.20466 1.64750 1.09421 1.11621 1.36514 1.23682 0.92123 0.89647 1.03221 1.22595 0.99015 0.96716 0.98481 1.22394 0.97817 0.97969 0.98772 1.22873 0.95883 0.98639 0.92126 0.92943 0.92084 0.93204 0.92297 0.91147 0.91073 0.95884 0.86425 0.97785 0.95521 0.89357 0.93105 0.84728 0.95292 0.91891 0.91093 0.92362 0.91774 0.94753 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.68 37.16 0.36 -1.42 16 2 C -0.12 -1.51 5.28 -26.74 -0.14 -1.65 16 3 C 0.08 1.23 1.71 -67.72 -0.12 1.11 16 4 H 0.03 0.48 7.94 -51.93 -0.41 0.07 16 5 C 0.07 1.24 4.80 -3.82 -0.02 1.22 16 6 N -0.67 -13.89 2.86 -107.95 -0.31 -14.19 16 7 C 0.21 5.21 2.57 -68.87 -0.18 5.04 16 8 H 0.03 0.91 7.80 -51.93 -0.41 0.51 16 9 C -0.17 -4.04 8.94 37.16 0.33 -3.71 16 10 C -0.49 -13.46 8.84 -34.44 -0.30 -13.77 16 11 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 12 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 13 N -0.90 -25.82 11.32 55.43 0.63 -25.20 16 14 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 N -0.50 -7.85 5.11 -222.50 -1.14 -8.98 16 19 C 0.04 0.66 4.85 -1.90 -0.01 0.65 16 20 C -0.13 -1.80 7.06 -24.87 -0.18 -1.97 16 21 C -0.13 -1.59 6.93 -25.37 -0.18 -1.76 16 22 C 0.03 0.43 5.25 -2.75 -0.01 0.42 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.77 6.63 -51.93 -0.34 0.43 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 29 H 0.02 0.42 6.08 -51.93 -0.32 0.10 16 30 H 0.32 6.37 7.72 -39.29 -0.30 6.06 16 31 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 32 H 0.03 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.14 2.64 6.15 -51.93 -0.32 2.32 16 36 H 0.03 0.47 7.56 -51.93 -0.39 0.08 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.43 7.28 -51.93 -0.38 0.06 16 42 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 316.02 15.07 4.76 4.76 Total: -1.00 -27.54 316.02 -9.29 -36.83 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.68 Total: 4.66 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.53 Total: -14.42 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.82 Total: -48.37 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.54 -9.29 -36.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380311950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.295 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds