Wall clock time and date at job start Mon Mar 30 2020 03:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47209 * 2 1 4 4 H 1.09001 * 109.47286 * 55.30178 * 3 2 1 5 5 C 1.53009 * 109.47115 * 295.30015 * 3 2 1 6 6 N 1.46899 * 109.47409 * 184.99956 * 5 3 2 7 7 C 1.46892 * 110.99840 * 180.02562 * 6 5 3 8 8 H 1.09000 * 109.47527 * 325.00297 * 7 6 5 9 9 C 1.53003 * 109.47224 * 85.00176 * 7 6 5 10 10 C 1.50704 * 109.47432 * 205.00184 * 7 6 5 11 11 H 1.08005 * 119.99180 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00462 * 180.02562 * 10 7 6 13 13 N 1.31516 * 119.99600 * 359.97438 * 12 10 7 14 14 Si 1.86797 * 120.00120 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47570 * 59.99289 * 14 12 10 16 16 H 1.48497 * 109.47325 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46729 * 299.99530 * 14 12 10 18 18 N 1.46895 * 109.47324 * 175.30483 * 3 2 1 19 19 C 1.48532 * 111.00198 * 188.27119 * 18 3 2 20 20 C 1.54942 * 103.22982 * 159.71768 * 19 18 3 21 21 C 1.54597 * 102.92116 * 322.58865 * 20 19 18 22 22 C 1.47907 * 110.99997 * 305.66689 * 18 3 2 23 23 H 1.09004 * 109.47083 * 179.20551 * 1 2 3 24 24 H 1.08996 * 109.46741 * 59.20347 * 1 2 3 25 25 H 1.08997 * 109.46897 * 299.20143 * 1 2 3 26 26 H 1.09002 * 109.46986 * 119.99582 * 2 1 3 27 27 H 1.08996 * 109.47225 * 239.99375 * 2 1 3 28 28 H 1.08996 * 109.46754 * 305.00422 * 5 3 2 29 29 H 1.09006 * 109.46637 * 64.99697 * 5 3 2 30 30 H 1.00902 * 110.99821 * 303.95913 * 6 5 3 31 31 H 1.08995 * 109.47049 * 299.99771 * 9 7 6 32 32 H 1.09000 * 109.46771 * 59.99657 * 9 7 6 33 33 H 1.08999 * 109.47461 * 180.02562 * 9 7 6 34 34 H 0.97001 * 119.99468 * 180.02562 * 13 12 10 35 35 H 1.09002 * 110.66802 * 278.15017 * 19 18 3 36 36 H 1.08999 * 110.66812 * 41.28392 * 19 18 3 37 37 H 1.08999 * 110.72574 * 204.22488 * 20 19 18 38 38 H 1.09004 * 110.87667 * 81.01614 * 20 19 18 39 39 H 1.09003 * 110.30460 * 263.04250 * 21 20 19 40 40 H 1.08991 * 110.31026 * 140.87005 * 21 20 19 41 41 H 1.09000 * 109.91521 * 333.50797 * 22 18 3 42 42 H 1.08999 * 109.91515 * 94.80018 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6096 1.9800 0.8449 5 6 1.6288 2.1288 -1.3042 6 7 2.2189 3.4729 -1.3574 7 6 1.8442 4.1636 -2.5985 8 1 1.7841 3.4412 -3.4125 9 6 0.4839 4.8396 -2.4152 10 6 2.8825 5.2052 -2.9271 11 1 3.7358 5.3402 -2.2788 12 6 2.7433 5.9858 -4.0550 13 7 1.7045 5.8209 -4.8446 14 14 4.0308 7.2764 -4.4626 15 1 5.3507 6.6198 -4.6413 16 1 3.6512 7.9755 -5.7165 17 1 4.1135 8.2603 -3.3534 18 7 3.5046 1.4440 0.1134 19 6 4.0213 2.8217 0.3158 20 6 5.4267 2.5874 0.9248 21 6 5.2054 1.3645 1.8443 22 6 3.9456 0.6703 1.2943 23 1 -0.3633 -1.0276 -0.0143 24 1 -0.3633 0.5261 -0.8827 25 1 -0.3633 0.5014 0.8970 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.9842 1.5420 -2.1512 29 1 0.5423 2.2069 -1.3467 30 1 1.9561 4.0156 -0.5484 31 1 -0.2671 4.0863 -2.1777 32 1 0.5440 5.5620 -1.6012 33 1 0.2055 5.3517 -3.3363 34 1 1.6067 6.3698 -5.6383 35 1 4.0974 3.3478 -0.6358 36 1 3.3876 3.3720 1.0113 37 1 5.7451 3.4536 1.5048 38 1 6.1541 2.3579 0.1461 39 1 5.0406 1.6887 2.8718 40 1 6.0614 0.6918 1.7917 41 1 3.1616 0.6694 2.0515 42 1 4.1832 -0.3521 1.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380311950.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:12 Heat of formation + Delta-G solvation = -16.109885 kcal Electronic energy + Delta-G solvation = -18391.550517 eV Core-core repulsion = 15791.463776 eV Total energy + Delta-G solvation = -2600.086741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32272 -37.66203 -35.89323 -34.12055 -31.69028 -30.51470 -29.28474 -27.32494 -26.97105 -24.38548 -22.47413 -22.18338 -21.47617 -20.61565 -18.32579 -17.25064 -16.80967 -16.66799 -16.07322 -15.33154 -15.05676 -14.73767 -14.67271 -14.20255 -13.95931 -13.54369 -13.42513 -13.30027 -13.08304 -12.84341 -12.74411 -12.56408 -12.24682 -12.16645 -12.11599 -12.01754 -11.92135 -11.63020 -11.51908 -11.36105 -11.29889 -10.91550 -10.45260 -9.17030 -8.67653 -8.06585 -6.17104 1.44384 1.46237 1.53622 2.46050 3.17842 3.22058 3.63386 3.84257 3.92663 4.08686 4.18148 4.28650 4.41135 4.46866 4.53410 4.65399 4.71393 4.73236 4.78586 4.87745 4.90643 4.94182 5.03779 5.05651 5.09129 5.11420 5.16091 5.24434 5.37036 5.39739 5.44444 5.46483 5.67370 5.76374 5.84000 6.26154 6.29922 6.38355 6.67631 6.85435 6.97878 7.52576 8.98992 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.006936 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.883501 B = 4036.051857 C = 5050.796319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.088 3.912 4 H 0.034 0.966 5 C 0.073 3.927 6 N -0.668 5.668 7 C 0.216 3.784 8 H -0.004 1.004 9 C -0.155 4.155 10 C -0.509 4.509 11 H 0.057 0.943 12 C 0.007 3.993 13 N -0.925 5.925 14 Si 0.959 3.041 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.271 1.271 18 N -0.518 5.518 19 C 0.042 3.958 20 C -0.128 4.128 21 C -0.124 4.124 22 C 0.033 3.967 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.025 0.975 30 H 0.325 0.675 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.060 0.940 34 H 0.259 0.741 35 H 0.097 0.903 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -9.877 13.413 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.021 4.021 4 H 0.052 0.948 5 C -0.057 4.057 6 N -0.297 5.297 7 C 0.107 3.893 8 H 0.014 0.986 9 C -0.214 4.214 10 C -0.547 4.547 11 H 0.075 0.925 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.785 3.215 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.196 1.196 18 N -0.242 5.242 19 C -0.086 4.086 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.095 4.095 23 H 0.089 0.911 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.142 0.858 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.360 -10.268 12.507 16.353 hybrid contribution -0.957 1.402 0.160 1.705 sum 1.403 -8.867 12.667 15.526 Atomic orbital electron populations 1.21784 0.94868 1.02411 1.01648 1.21549 0.96234 0.94392 1.02702 1.21807 0.88268 0.96564 0.95472 0.94840 1.21948 0.95354 0.90900 0.97462 1.61083 1.61321 1.02902 1.04402 1.18930 0.91493 0.91654 0.87228 0.98594 1.22233 0.98671 0.99206 1.01324 1.21423 1.07590 1.17611 1.08119 0.92474 1.25714 0.97602 0.99515 0.96236 1.70014 1.30180 1.41528 1.14843 0.85599 0.79447 0.79155 0.77313 1.19981 1.21222 1.19570 1.64685 1.09543 1.11483 1.38510 1.23451 0.93905 0.89863 1.01382 1.22553 0.97086 0.98275 0.98721 1.22380 0.97823 0.97064 0.98954 1.22932 0.96604 0.98633 0.91290 0.91078 0.93579 0.92483 0.90497 0.92004 0.93240 0.95699 0.85779 0.95928 0.94989 0.92118 0.93157 0.88494 0.95409 0.90755 0.92039 0.90770 0.90363 0.93720 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.68 71.98 0.70 -2.49 16 2 C -0.11 -2.64 5.28 30.59 0.16 -2.48 16 3 C 0.09 2.59 1.71 44.92 0.08 2.67 16 4 H 0.03 0.98 7.94 -2.39 -0.02 0.97 16 5 C 0.07 2.68 4.80 86.31 0.41 3.09 16 6 N -0.67 -28.07 2.86 -495.44 -1.41 -29.48 16 7 C 0.22 11.03 2.57 44.17 0.11 11.15 16 8 H 0.00 -0.23 7.80 -2.39 -0.02 -0.25 16 9 C -0.15 -7.55 8.94 71.98 0.64 -6.91 16 10 C -0.51 -28.40 8.84 25.60 0.23 -28.17 16 11 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 12 C 0.01 0.39 5.30 84.65 0.45 0.84 16 13 N -0.93 -54.21 11.32 21.45 0.24 -53.97 16 14 Si 0.96 44.51 29.54 68.60 2.03 46.54 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 18 N -0.52 -15.72 5.11 -857.85 -4.38 -20.10 16 19 C 0.04 1.34 4.85 86.65 0.42 1.76 16 20 C -0.13 -3.36 7.06 31.80 0.22 -3.14 16 21 C -0.12 -2.64 6.93 31.47 0.22 -2.42 16 22 C 0.03 0.78 5.25 86.45 0.45 1.23 16 23 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.05 1.11 6.63 -2.39 -0.02 1.10 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.59 6.56 -2.39 -0.02 1.57 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 2.01 8.06 -2.39 -0.02 1.99 16 29 H 0.03 0.90 6.08 -2.38 -0.01 0.89 16 30 H 0.33 13.03 7.72 -89.69 -0.69 12.33 16 31 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 32 H 0.03 1.47 8.13 -2.39 -0.02 1.45 16 33 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.10 3.89 6.15 -2.39 -0.01 3.88 16 36 H 0.03 0.88 7.56 -2.39 -0.02 0.86 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 0.97 7.28 -2.39 -0.02 0.95 16 42 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 Total: -1.00 -59.58 316.02 0.85 -58.73 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.28 Total: 23.14 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.10 Total: -24.86 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -5.55 Total: -103.55 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -59.58 0.85 -58.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380311950.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.618 kcal (2) G-P(sol) polarization free energy of solvation -59.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds