Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47348 * 2 1 4 4 H 1.09003 * 109.47269 * 59.70418 * 3 2 1 5 5 C 1.53002 * 109.47165 * 179.70200 * 3 2 1 6 6 N 1.46907 * 109.46818 * 175.00142 * 5 3 2 7 7 C 1.46900 * 110.99736 * 180.02562 * 6 5 3 8 8 H 1.09005 * 109.47295 * 325.00072 * 7 6 5 9 9 C 1.53005 * 109.47060 * 84.99648 * 7 6 5 10 10 C 1.50694 * 109.47285 * 204.99894 * 7 6 5 11 11 H 1.08003 * 119.99978 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00215 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00377 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99958 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47124 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47001 * 120.00140 * 14 12 10 17 17 H 1.48497 * 109.47575 * 239.99948 * 14 12 10 18 18 N 1.46895 * 109.47157 * 299.70463 * 3 2 1 19 19 C 1.48534 * 110.99800 * 324.20511 * 18 3 2 20 20 C 1.54937 * 103.22793 * 159.72346 * 19 18 3 21 21 C 1.54604 * 102.91923 * 322.58490 * 20 19 18 22 22 C 1.47903 * 111.00272 * 81.59945 * 18 3 2 23 23 H 1.09000 * 109.47114 * 307.42656 * 1 2 3 24 24 H 1.08999 * 109.46400 * 67.42610 * 1 2 3 25 25 H 1.08993 * 109.47092 * 187.42164 * 1 2 3 26 26 H 1.08995 * 109.47326 * 239.99468 * 2 1 3 27 27 H 1.09000 * 109.46987 * 120.00064 * 2 1 3 28 28 H 1.08996 * 109.47171 * 55.00048 * 5 3 2 29 29 H 1.08998 * 109.47431 * 294.99761 * 5 3 2 30 30 H 1.00894 * 111.00164 * 56.05049 * 6 5 3 31 31 H 1.08994 * 109.47158 * 60.00235 * 9 7 6 32 32 H 1.09005 * 109.46407 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47193 * 299.99978 * 9 7 6 34 34 H 0.96994 * 120.00317 * 179.97438 * 13 12 10 35 35 H 1.09002 * 110.66524 * 278.15124 * 19 18 3 36 36 H 1.08996 * 110.67209 * 41.28519 * 19 18 3 37 37 H 1.08998 * 110.72437 * 204.22693 * 20 19 18 38 38 H 1.08995 * 110.72723 * 80.94171 * 20 19 18 39 39 H 1.09003 * 110.30471 * 263.03951 * 21 20 19 40 40 H 1.08998 * 110.30822 * 140.87429 * 21 20 19 41 41 H 1.09001 * 109.91396 * 333.51167 * 22 18 3 42 42 H 1.09003 * 109.91303 * 94.80291 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6724 1.9579 0.8873 5 6 3.5701 1.4424 0.0075 6 7 4.0603 2.8220 -0.1132 7 6 5.5288 2.8609 -0.1101 8 1 5.9115 2.0846 0.5526 9 6 6.0483 2.6217 -1.5292 10 6 5.9945 4.2096 0.3747 11 1 5.2719 4.9628 0.6523 12 6 7.3431 4.4822 0.4638 13 7 8.2232 3.5654 0.1253 14 14 7.9204 6.1543 1.0641 15 1 6.7418 7.0011 1.3789 16 1 8.7470 5.9833 2.2858 17 1 8.7312 6.8076 0.0053 18 7 1.5563 2.1329 -1.2029 19 6 1.5165 1.2103 -2.3664 20 6 0.5316 1.9076 -3.3382 21 6 -0.5320 2.5008 -2.3857 22 6 0.1683 2.6094 -1.0186 23 1 -0.3633 0.6246 0.8161 24 1 -0.3632 0.3945 -0.9490 25 1 -0.3633 -1.0190 0.1327 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9375 0.8515 -0.8315 29 1 3.9289 1.0098 0.9414 30 1 3.6813 3.4056 0.6174 31 1 5.6657 3.3979 -2.1918 32 1 7.1380 2.6511 -1.5268 33 1 5.7115 1.6462 -1.8798 34 1 9.1719 3.7573 0.1877 35 1 2.5039 1.1194 -2.8191 36 1 1.1367 0.2328 -2.0695 37 1 0.0808 1.1829 -4.0162 38 1 1.0341 2.6981 -3.8954 39 1 -1.3926 1.8353 -2.3183 40 1 -0.8415 3.4870 -2.7316 41 1 -0.3449 1.9843 -0.2878 42 1 0.1732 3.6472 -0.6852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380311951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = 13.156421 kcal Electronic energy + Delta-G solvation = -18342.030035 eV Core-core repulsion = 15743.212377 eV Total energy + Delta-G solvation = -2598.817658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75199 -35.85957 -34.12433 -32.21609 -30.35781 -28.98273 -28.61937 -26.25087 -25.03908 -22.46704 -21.97078 -20.67262 -19.54685 -19.41288 -16.60824 -16.07074 -15.83136 -14.87969 -14.44439 -14.18470 -13.83590 -13.60993 -13.31632 -12.65066 -12.46562 -12.13938 -11.96854 -11.90029 -11.56440 -11.26609 -11.10791 -11.06497 -10.95100 -10.85330 -10.73907 -10.60210 -10.30208 -10.24425 -10.11366 -10.00194 -9.69601 -8.69816 -8.38490 -7.76854 -6.95656 -5.94095 -3.99405 3.33729 3.41332 3.46224 4.27463 4.47386 4.77098 4.82792 4.95689 5.04903 5.10406 5.17450 5.37082 5.44515 5.56295 5.58802 5.65000 5.73356 5.83558 5.93022 5.93828 5.96422 5.99313 6.12881 6.19776 6.22610 6.27341 6.35018 6.42354 6.54257 7.01506 7.27716 7.31285 7.38390 7.46798 7.67161 7.89331 8.03973 8.40440 8.59010 8.86813 9.14854 9.66295 11.12365 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034233 B = 0.005379 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.727714 B = 5203.879685 C = 5356.300400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.158 4.158 3 C 0.079 3.921 4 H 0.072 0.928 5 C 0.076 3.924 6 N -0.667 5.667 7 C 0.210 3.790 8 H -0.005 1.005 9 C -0.119 4.119 10 C -0.511 4.511 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.892 5.892 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.284 1.284 18 N -0.476 5.476 19 C 0.022 3.978 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.015 3.985 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.326 0.674 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.001 0.999 34 H 0.259 0.741 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.013 -6.512 -2.672 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.198 4.198 3 C -0.031 4.031 4 H 0.090 0.910 5 C -0.055 4.055 6 N -0.297 5.297 7 C 0.103 3.897 8 H 0.012 0.988 9 C -0.178 4.178 10 C -0.550 4.550 11 H 0.078 0.922 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.723 3.277 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.210 1.210 18 N -0.199 5.199 19 C -0.106 4.106 20 C -0.161 4.161 21 C -0.167 4.167 22 C -0.113 4.113 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.143 0.857 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.486 -6.076 -3.451 16.989 hybrid contribution 0.113 -0.019 1.444 1.448 sum -15.373 -6.095 -2.007 16.659 Atomic orbital electron populations 1.22162 0.96304 1.01198 1.02119 1.22212 0.95771 0.99075 1.02693 1.21941 0.96468 0.91367 0.93306 0.90995 1.21820 0.91703 0.93397 0.98544 1.60532 1.10628 1.06357 1.52196 1.19096 0.81623 0.95763 0.93245 0.98769 1.21658 1.02636 0.95885 0.97604 1.21335 0.91715 0.99025 1.42949 0.92239 1.24924 0.96795 0.96938 0.95495 1.69917 1.01271 1.33354 1.48604 0.86494 0.78655 0.84291 0.78259 1.19786 1.21233 1.21049 1.64946 1.18710 1.33238 1.03020 1.23497 1.00032 0.95071 0.91954 1.22459 0.96359 0.99925 0.97369 1.22359 0.97744 1.01009 0.95592 1.23282 0.89823 1.01282 0.96907 0.92546 0.91625 0.93187 0.90921 0.91633 0.92218 0.96651 0.85700 0.94993 0.90492 0.98008 0.93147 0.90179 0.92777 0.91872 0.90804 0.92266 0.91451 0.92561 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 7.88 37.16 0.29 -1.36 16 2 C -0.16 -1.92 4.87 -26.73 -0.13 -2.05 16 3 C 0.08 1.17 2.22 -67.72 -0.15 1.02 16 4 H 0.07 1.08 7.91 -51.93 -0.41 0.66 16 5 C 0.08 1.41 5.05 -3.82 -0.02 1.40 16 6 N -0.67 -14.81 6.03 -107.95 -0.65 -15.46 16 7 C 0.21 5.53 2.60 -68.86 -0.18 5.35 16 8 H -0.01 -0.15 7.80 -51.93 -0.41 -0.56 16 9 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 10 C -0.51 -14.47 8.59 -34.44 -0.30 -14.77 16 11 H 0.06 1.67 7.62 -52.48 -0.40 1.27 16 12 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 13 N -0.89 -26.17 11.32 55.43 0.63 -25.55 16 14 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 N -0.48 -7.12 4.88 -222.50 -1.09 -8.21 16 19 C 0.02 0.29 5.42 -1.90 -0.01 0.28 16 20 C -0.12 -1.42 7.06 -24.87 -0.18 -1.60 16 21 C -0.13 -1.39 6.38 -25.37 -0.16 -1.55 16 22 C 0.01 0.19 5.69 -2.76 -0.02 0.17 16 23 H 0.06 0.57 7.19 -51.93 -0.37 0.19 16 24 H 0.06 0.68 4.14 -51.93 -0.21 0.46 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.89 6.08 -51.93 -0.32 0.58 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.16 7.42 -51.93 -0.39 0.77 16 29 H 0.02 0.29 8.06 -51.93 -0.42 -0.12 16 30 H 0.33 7.21 8.22 -39.30 -0.32 6.89 16 31 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 33 H 0.00 0.02 7.45 -51.93 -0.39 -0.37 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.65 4.10 -51.93 -0.21 0.44 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.64 4.15 -51.93 -0.22 0.42 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 310.88 15.07 4.68 4.68 Total: -1.00 -29.25 310.88 -9.35 -38.60 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.30 Total: 3.44 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.60 Total: -14.28 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.11 Total: -49.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.25 -9.35 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380311951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.755 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds