Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47348 * 2 1 4 4 H 1.09003 * 109.47269 * 59.70418 * 3 2 1 5 5 C 1.53002 * 109.47165 * 179.70200 * 3 2 1 6 6 N 1.46907 * 109.46818 * 175.00142 * 5 3 2 7 7 C 1.46900 * 110.99736 * 180.02562 * 6 5 3 8 8 H 1.09005 * 109.47295 * 325.00072 * 7 6 5 9 9 C 1.53005 * 109.47060 * 84.99648 * 7 6 5 10 10 C 1.50694 * 109.47285 * 204.99894 * 7 6 5 11 11 H 1.08003 * 119.99978 * 359.97438 * 10 7 6 12 12 C 1.37874 * 120.00215 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00377 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99958 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47124 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47001 * 120.00140 * 14 12 10 17 17 H 1.48497 * 109.47575 * 239.99948 * 14 12 10 18 18 N 1.46895 * 109.47157 * 299.70463 * 3 2 1 19 19 C 1.48534 * 110.99800 * 324.20511 * 18 3 2 20 20 C 1.54937 * 103.22793 * 159.72346 * 19 18 3 21 21 C 1.54604 * 102.91923 * 322.58490 * 20 19 18 22 22 C 1.47903 * 111.00272 * 81.59945 * 18 3 2 23 23 H 1.09000 * 109.47114 * 307.42656 * 1 2 3 24 24 H 1.08999 * 109.46400 * 67.42610 * 1 2 3 25 25 H 1.08993 * 109.47092 * 187.42164 * 1 2 3 26 26 H 1.08995 * 109.47326 * 239.99468 * 2 1 3 27 27 H 1.09000 * 109.46987 * 120.00064 * 2 1 3 28 28 H 1.08996 * 109.47171 * 55.00048 * 5 3 2 29 29 H 1.08998 * 109.47431 * 294.99761 * 5 3 2 30 30 H 1.00894 * 111.00164 * 56.05049 * 6 5 3 31 31 H 1.08994 * 109.47158 * 60.00235 * 9 7 6 32 32 H 1.09005 * 109.46407 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47193 * 299.99978 * 9 7 6 34 34 H 0.96994 * 120.00317 * 179.97438 * 13 12 10 35 35 H 1.09002 * 110.66524 * 278.15124 * 19 18 3 36 36 H 1.08996 * 110.67209 * 41.28519 * 19 18 3 37 37 H 1.08998 * 110.72437 * 204.22693 * 20 19 18 38 38 H 1.08995 * 110.72723 * 80.94171 * 20 19 18 39 39 H 1.09003 * 110.30471 * 263.03951 * 21 20 19 40 40 H 1.08998 * 110.30822 * 140.87429 * 21 20 19 41 41 H 1.09001 * 109.91396 * 333.51167 * 22 18 3 42 42 H 1.09003 * 109.91303 * 94.80291 * 22 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6724 1.9579 0.8873 5 6 3.5701 1.4424 0.0075 6 7 4.0603 2.8220 -0.1132 7 6 5.5288 2.8609 -0.1101 8 1 5.9115 2.0846 0.5526 9 6 6.0483 2.6217 -1.5292 10 6 5.9945 4.2096 0.3747 11 1 5.2719 4.9628 0.6523 12 6 7.3431 4.4822 0.4638 13 7 8.2232 3.5654 0.1253 14 14 7.9204 6.1543 1.0641 15 1 6.7418 7.0011 1.3789 16 1 8.7470 5.9833 2.2858 17 1 8.7312 6.8076 0.0053 18 7 1.5563 2.1329 -1.2029 19 6 1.5165 1.2103 -2.3664 20 6 0.5316 1.9076 -3.3382 21 6 -0.5320 2.5008 -2.3857 22 6 0.1683 2.6094 -1.0186 23 1 -0.3633 0.6246 0.8161 24 1 -0.3632 0.3945 -0.9490 25 1 -0.3633 -1.0190 0.1327 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.9375 0.8515 -0.8315 29 1 3.9289 1.0098 0.9414 30 1 3.6813 3.4056 0.6174 31 1 5.6657 3.3979 -2.1918 32 1 7.1380 2.6511 -1.5268 33 1 5.7115 1.6462 -1.8798 34 1 9.1719 3.7573 0.1877 35 1 2.5039 1.1194 -2.8191 36 1 1.1367 0.2328 -2.0695 37 1 0.0808 1.1829 -4.0162 38 1 1.0341 2.6981 -3.8954 39 1 -1.3926 1.8353 -2.3183 40 1 -0.8415 3.4870 -2.7316 41 1 -0.3449 1.9843 -0.2878 42 1 0.1732 3.6472 -0.6852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380311951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = -6.394764 kcal Electronic energy + Delta-G solvation = -18342.877838 eV Core-core repulsion = 15743.212377 eV Total energy + Delta-G solvation = -2599.665461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.82724 -37.63337 -35.47230 -34.05117 -31.57159 -30.42431 -29.80071 -27.79876 -27.12288 -23.84677 -23.01533 -21.62319 -21.54998 -20.56845 -18.50473 -17.38660 -16.88935 -16.78080 -15.83785 -15.60496 -15.09868 -14.92383 -14.86872 -14.33841 -13.73240 -13.46142 -13.18896 -13.09236 -12.96736 -12.89597 -12.65812 -12.50408 -12.36092 -12.19516 -12.11328 -11.99227 -11.95589 -11.74207 -11.60265 -11.32913 -11.20652 -10.84084 -10.56086 -8.86678 -8.81383 -8.11621 -6.25506 1.41238 1.42830 1.55267 2.42687 3.15980 3.18700 3.60804 3.84434 3.93925 4.06777 4.13178 4.23649 4.26582 4.47851 4.50131 4.67674 4.69956 4.75855 4.81424 4.83745 4.90201 4.97694 5.04877 5.06944 5.07965 5.10699 5.19815 5.22684 5.26846 5.30470 5.38346 5.46858 5.50396 5.69932 5.89373 6.24681 6.27042 6.37355 6.57081 6.88285 7.09631 7.45209 8.94427 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034233 B = 0.005379 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.727714 B = 5203.879685 C = 5356.300400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.152 4.152 3 C 0.087 3.913 4 H 0.072 0.928 5 C 0.078 3.922 6 N -0.664 5.664 7 C 0.215 3.785 8 H -0.038 1.038 9 C -0.105 4.105 10 C -0.533 4.533 11 H 0.057 0.943 12 C 0.011 3.989 13 N -0.920 5.920 14 Si 0.964 3.036 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.280 1.280 18 N -0.506 5.506 19 C 0.022 3.978 20 C -0.120 4.120 21 C -0.122 4.122 22 C 0.014 3.986 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.010 0.990 30 H 0.326 0.674 31 H 0.024 0.976 32 H 0.054 0.946 33 H 0.016 0.984 34 H 0.262 0.738 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 -6.496 -2.599 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C -0.022 4.022 4 H 0.090 0.910 5 C -0.052 4.052 6 N -0.293 5.293 7 C 0.107 3.893 8 H -0.021 1.021 9 C -0.163 4.163 10 C -0.571 4.571 11 H 0.075 0.925 12 C -0.188 4.188 13 N -0.560 5.560 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.206 1.206 18 N -0.229 5.229 19 C -0.106 4.106 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.113 4.113 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.143 0.857 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.390 -6.068 -3.381 18.726 hybrid contribution 0.710 -0.064 1.413 1.583 sum -16.679 -6.132 -1.969 17.880 Atomic orbital electron populations 1.22100 0.94254 1.02412 1.02415 1.22138 0.97456 0.96796 1.02788 1.21758 0.93395 0.93480 0.93584 0.91026 1.21873 0.94725 0.90979 0.97663 1.60461 1.08103 1.08618 1.52167 1.18912 0.83958 0.94107 0.92365 1.02062 1.21459 1.01009 0.96393 0.97484 1.21620 0.92203 0.99752 1.43559 0.92476 1.25760 0.96851 1.00727 0.95456 1.70041 1.01619 1.35254 1.49084 0.85416 0.78192 0.79615 0.77825 1.19133 1.20511 1.20568 1.64813 1.20715 1.34116 1.03298 1.23485 0.99298 0.95962 0.91835 1.22445 0.96128 0.99874 0.97364 1.22346 0.97906 1.01788 0.93990 1.23310 0.88758 1.00695 0.98549 0.92165 0.91338 0.91546 0.91073 0.91358 0.93321 0.97217 0.85696 0.95708 0.92722 0.96536 0.92901 0.92830 0.91061 0.89541 0.92465 0.89889 0.91108 0.90951 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 7.88 71.98 0.57 -2.12 16 2 C -0.15 -3.44 4.87 30.59 0.15 -3.29 16 3 C 0.09 2.53 2.22 44.92 0.10 2.63 16 4 H 0.07 2.07 7.91 -2.39 -0.02 2.05 16 5 C 0.08 2.94 5.05 86.30 0.44 3.38 16 6 N -0.66 -30.06 6.03 -495.43 -2.99 -33.05 16 7 C 0.22 11.62 2.60 44.17 0.11 11.74 16 8 H -0.04 -2.27 7.80 -2.38 -0.02 -2.29 16 9 C -0.10 -5.60 9.19 71.98 0.66 -4.94 16 10 C -0.53 -30.61 8.59 25.60 0.22 -30.39 16 11 H 0.06 3.23 7.62 -2.91 -0.02 3.21 16 12 C 0.01 0.61 5.30 84.65 0.45 1.06 16 13 N -0.92 -54.78 11.32 21.45 0.24 -54.54 16 14 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 N -0.51 -14.70 4.88 -857.87 -4.19 -18.89 16 19 C 0.02 0.55 5.42 86.65 0.47 1.02 16 20 C -0.12 -2.55 7.06 31.80 0.22 -2.33 16 21 C -0.12 -2.31 6.38 31.47 0.20 -2.11 16 22 C 0.01 0.33 5.69 86.44 0.49 0.82 16 23 H 0.06 1.02 7.19 -2.39 -0.02 1.00 16 24 H 0.07 1.16 4.14 -2.39 -0.01 1.15 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.63 6.08 -2.39 -0.01 1.62 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.93 7.42 -2.39 -0.02 1.91 16 29 H 0.01 0.38 8.06 -2.39 -0.02 0.36 16 30 H 0.33 14.67 8.22 -89.70 -0.74 13.93 16 31 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 3.15 6.07 -2.38 -0.01 3.14 16 33 H 0.02 0.78 7.45 -2.39 -0.02 0.76 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.57 4.10 -2.39 -0.01 1.56 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.20 7.87 -2.39 -0.02 1.18 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.44 4.15 -2.39 -0.01 1.43 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -63.04 310.88 -0.57 -63.61 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.25 Total: 20.54 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.08 Total: -24.52 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -6.93 Total: -106.48 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.04 -0.57 -63.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380311951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.219 kcal (2) G-P(sol) polarization free energy of solvation -63.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds